RNA–Protein interactions for RNA: ENST00000314191.6

PRKDC-201, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PRKDC, Length 13,509 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-201ENST00000314191 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.61□□□□□ -1.032e-7■■□□□ 12.9
PRKDC-201ENST00000314191 PLEKHD1A6NEE1 506 aa8.61□□□□□ -1.03
PRKDC-201ENST00000314191 KCNH8Q96L42 1107 aa8.61□□□□□ -1.03
PRKDC-201ENST00000314191 CFDP1Q9UEE9 299 aaPredicted RBP8.6□□□□□ -1.03
PRKDC-201ENST00000314191 KDM2AQ9Y2K7 1162 aa8.59□□□□□ -1.03
PRKDC-201ENST00000314191 IGF1RP08069 1367 aa8.58□□□□□ -1.04
PRKDC-201ENST00000314191 NCAPD3P42695 1498 aa8.57□□□□□ -1.04
PRKDC-201ENST00000314191 PDS5BQ9NTI5 1447 aa8.57□□□□□ -1.04
PRKDC-201ENST00000314191 FAM9BQ8IZU0 186 aa8.57□□□□□ -1.04
PRKDC-201ENST00000314191 FHAD1B1AJZ9 1412 aa8.56□□□□□ -1.04
PRKDC-201ENST00000314191 HNRNPUQ00839 825 aaKnown RBP eCLIP8.56□□□□□ -1.04
PRKDC-201ENST00000314191 FKBP8Q14318 412 aa8.56□□□□□ -1.04
PRKDC-201ENST00000314191 NPM1P06748 294 aaKnown RBP eCLIP8.56□□□□□ -1.04
PRKDC-201ENST00000314191 CLSPNQ9HAW4 1339 aa8.55□□□□□ -1.04
PRKDC-201ENST00000314191 EIF4G2P78344 907 aaKnown RBP eCLIP8.55□□□□□ -1.042e-6■■■■■ 49
PRKDC-201ENST00000314191 FHOD3Q2V2M9 1422 aa8.55□□□□□ -1.04
PRKDC-201ENST00000314191 CHGAP10645 457 aaKnown RBP8.55□□□□□ -1.04
PRKDC-201ENST00000314191 ERCC6Q03468 1493 aa8.54□□□□□ -1.04
PRKDC-201ENST00000314191 EIF4G1Q04637 1599 aaKnown RBP8.53□□□□□ -1.04
PRKDC-201ENST00000314191 FANCD2Q9BXW9 1451 aa8.52□□□□□ -1.04
PRKDC-201ENST00000314191 RGL3Q3MIN7 710 aa8.52□□□□□ -1.05
PRKDC-201ENST00000314191 SALL2Q9Y467 1007 aaPredicted RBP8.51□□□□□ -1.05
PRKDC-201ENST00000314191 SETD5Q9C0A6 1442 aa8.51□□□□□ -1.05
PRKDC-201ENST00000314191 RAB3GAP2Q9H2M9 1393 aa8.51□□□□□ -1.05
PRKDC-201ENST00000314191 RAD54L2Q9Y4B4 1467 aa8.49□□□□□ -1.05
PRKDC-201ENST00000314191 MRS2Q9HD23 443 aa8.49□□□□□ -1.05
PRKDC-201ENST00000314191 FOXD1Q16676 465 aa8.48□□□□□ -1.05
PRKDC-201ENST00000314191 DHX57Q6P158 1386 aaKnown RBP8.48□□□□□ -1.05
PRKDC-201ENST00000314191 SENP3-EIF4A1A0A087X0R7 540 aa8.47□□□□□ -1.05
PRKDC-201ENST00000314191 FGD5Q6ZNL6 1462 aa8.47□□□□□ -1.05
PRKDC-201ENST00000314191 DNAJC5BQ9UF47 199 aa8.47□□□□□ -1.05
PRKDC-201ENST00000314191 ARHGAP35Q9NRY4 1499 aa8.47□□□□□ -1.05
PRKDC-201ENST00000314191 TMC1Q8TDI8 760 aa8.46□□□□□ -1.06
PRKDC-201ENST00000314191 FMN1Q68DA7 1419 aa8.46□□□□□ -1.06
PRKDC-201ENST00000314191 TIMELESSQ9UNS1 1208 aa8.46□□□□□ -1.06
PRKDC-201ENST00000314191 CFTRP13569 1480 aa8.45□□□□□ -1.06
PRKDC-201ENST00000314191 PPP1R15AO75807 674 aaPredicted RBP8.45□□□□□ -1.06
PRKDC-201ENST00000314191 IRX6P78412 446 aaPredicted RBP8.45□□□□□ -1.06
PRKDC-201ENST00000314191 CARD11Q9BXL7 1154 aa8.44□□□□□ -1.06
PRKDC-201ENST00000314191 SENP3Q9H4L4 574 aaPredicted RBP8.44□□□□□ -1.06
PRKDC-201ENST00000314191 KIF21BO75037 1637 aa8.43□□□□□ -1.06
PRKDC-201ENST00000314191 MPHOSPH9Q99550 1183 aa8.43□□□□□ -1.06
PRKDC-201ENST00000314191 HSPA5P11021 654 aaKnown RBP8.43□□□□□ -1.06
PRKDC-201ENST00000314191 JPH4Q96JJ6 628 aa8.43□□□□□ -1.06
PRKDC-201ENST00000314191 PKD2Q13563 968 aa8.42□□□□□ -1.06
PRKDC-201ENST00000314191 NESP48681 1621 aa8.41□□□□□ -1.06
PRKDC-201ENST00000314191 BICRAQ9NZM4 1560 aa8.41□□□□□ -1.06
PRKDC-201ENST00000314191 PRXQ9BXM0 1461 aa8.41□□□□□ -1.06
PRKDC-201ENST00000314191 SYNJ1O43426 1573 aa8.41□□□□□ -1.06
PRKDC-201ENST00000314191 HNRNPMP52272 730 aaKnown RBP eCLIP8.4□□□□□ -1.062e-6■■■■□ 24.1
PRKDC-201ENST00000314191 ARAP1Q96P48 1450 aa8.4□□□□□ -1.06
PRKDC-201ENST00000314191 DCAF11Q8TEB1 546 aa8.4□□□□□ -1.06
PRKDC-201ENST00000314191 L3MBTL2Q969R5 705 aa8.4□□□□□ -1.06
PRKDC-201ENST00000314191 PHLDB1Q86UU1 1377 aa8.4□□□□□ -1.06
PRKDC-201ENST00000314191 STAG3Q9UJ98 1225 aa8.39□□□□□ -1.07
PRKDC-201ENST00000314191 DAXXQ9UER7 740 aaPredicted RBP8.39□□□□□ -1.07
PRKDC-201ENST00000314191 CARMIL2Q6F5E8 1435 aa8.39□□□□□ -1.07
PRKDC-201ENST00000314191 PLPPR3Q6T4P5 718 aa8.39□□□□□ -1.07
PRKDC-201ENST00000314191 AQRO60306 1485 aaKnown RBP eCLIP8.38□□□□□ -1.078e-7■■■■□ 20.7
PRKDC-201ENST00000314191 ESF1Q9H501 851 aaKnown RBP8.37□□□□□ -1.07
PRKDC-201ENST00000314191 CUX1P39880 1505 aa8.36□□□□□ -1.07
PRKDC-201ENST00000314191 SUPT16HQ9Y5B9 1047 aaKnown RBP8.36□□□□□ -1.07
PRKDC-201ENST00000314191 GAPVD1Q14C86 1478 aa8.36□□□□□ -1.07
PRKDC-201ENST00000314191 ZNF644Q9H582 1327 aaPredicted RBP8.36□□□□□ -1.07
PRKDC-201ENST00000314191 NUP155O75694 1391 aa8.35□□□□□ -1.07
PRKDC-201ENST00000314191 CANXP27824 592 aaKnown RBP8.34□□□□□ -1.07
PRKDC-201ENST00000314191 EFCAB2Q5VUJ9 269 aa8.34□□□□□ -1.07
PRKDC-201ENST00000314191 WDR43Q15061 677 aaKnown RBP eCLIP8.33□□□□□ -1.084e-6■■■■□ 26.5
PRKDC-201ENST00000314191 HMGXB3Q12766 1538 aa8.32□□□□□ -1.08
PRKDC-201ENST00000314191 POLA1P09884 1462 aaPredicted RBP8.32□□□□□ -1.08
PRKDC-201ENST00000314191 LRRC9Q6ZRR7 1453 aa8.32□□□□□ -1.08
PRKDC-201ENST00000314191 ANKRD30AQ9BXX3 1397 aa8.31□□□□□ -1.08
PRKDC-201ENST00000314191 BCL11AQ9H165 835 aa8.31□□□□□ -1.08
PRKDC-201ENST00000314191 CCER2I3L3R5 266 aa8.31□□□□□ -1.08
PRKDC-201ENST00000314191 CC2D1BQ5T0F9 858 aaKnown RBP8.31□□□□□ -1.08
PRKDC-201ENST00000314191 CCDC136Q96JN2 1154 aa8.3□□□□□ -1.08
PRKDC-201ENST00000314191 NPM2Q86SE8 214 aaKnown RBP8.3□□□□□ -1.08
PRKDC-201ENST00000314191 FGD6Q6ZV73 1430 aa8.3□□□□□ -1.08
PRKDC-201ENST00000314191 GGT6Q6P531 493 aa8.29□□□□□ -1.08
PRKDC-201ENST00000314191 CCDC18Q5T9S5 1454 aa8.29□□□□□ -1.08
PRKDC-201ENST00000314191 KNSTRNQ9Y448 316 aa8.29□□□□□ -1.08
PRKDC-201ENST00000314191 PTPRGP23470 1445 aa8.29□□□□□ -1.08
PRKDC-201ENST00000314191 RRBP1Q9P2E9 1410 aaKnown RBP8.29□□□□□ -1.08
PRKDC-201ENST00000314191 NEFMP07197 916 aa8.29□□□□□ -1.08
PRKDC-201ENST00000314191 TOPBP1Q92547 1522 aa8.28□□□□□ -1.08
PRKDC-201ENST00000314191 ERICH3Q5RHP9 1530 aa8.28□□□□□ -1.08
PRKDC-201ENST00000314191 KIF3BO15066 747 aa8.28□□□□□ -1.08
PRKDC-201ENST00000314191 CASKIN1Q8WXD9 1431 aa8.27□□□□□ -1.09
PRKDC-201ENST00000314191 SLC24A1O60721 1099 aa8.27□□□□□ -1.09
PRKDC-201ENST00000314191 TOP2BQ02880 1626 aa8.26□□□□□ -1.09
PRKDC-201ENST00000314191 MYOM3Q5VTT5 1437 aa8.26□□□□□ -1.09
PRKDC-201ENST00000314191 NCOA2Q15596 1464 aa8.25□□□□□ -1.09
PRKDC-201ENST00000314191 TMF1P82094 1093 aa8.25□□□□□ -1.09
PRKDC-201ENST00000314191 RTL5Q5HYW3 569 aaPredicted RBP8.25□□□□□ -1.09
PRKDC-201ENST00000314191 CC2D2AQ9P2K1 1620 aa8.24□□□□□ -1.09
PRKDC-201ENST00000314191 GRIN2BQ13224 1484 aa8.24□□□□□ -1.09
PRKDC-201ENST00000314191 NEUROD2Q15784 382 aa8.24□□□□□ -1.09
PRKDC-201ENST00000314191 MLECQ14165 292 aa8.24□□□□□ -1.09
PRKDC-201ENST00000314191 TNNT2P45379 298 aaPredicted RBP8.24□□□□□ -1.09
PRKDC-201ENST00000314191 CDCA8Q53HL2 280 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms