RNA–Protein interactions for RNA: ENST00000314191.6

PRKDC-201, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PRKDC, Length 13,509 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-201ENST00000314191 DDX3XO00571 662 aaKnown RBP eCLIP6.58□□□□□ -1.369e-17■■■■■ 34.1
PRKDC-201ENST00000314191 SRSF7Q16629 238 aaKnown RBP eCLIP5.14□□□□□ -1.592e-12■□□□□ 11
PRKDC-201ENST00000314191 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.49□□□□□ -1.377e-12■■□□□ 11.6
PRKDC-201ENST00000314191 GRSF1Q12849 480 aaKnown RBP eCLIP5.98□□□□□ -1.457e-12■■■■■ 62.7
PRKDC-201ENST00000314191 FXR2P51116 673 aaKnown RBP eCLIP6.74□□□□□ -1.332e-10■■■■■ 45.8
PRKDC-201ENST00000314191 CDC40O60508 579 aaKnown RBP eCLIP5.81□□□□□ -1.483e-10■■■■□ 19.8
PRKDC-201ENST00000314191 TROVE2P10155 538 aaKnown RBP eCLIP6.58□□□□□ -1.365e-10■□□□□ 9.2
PRKDC-201ENST00000314191 U2AF2P26368 475 aaKnown RBP eCLIP6.95□□□□□ -1.31e-9■■■■□ 21.5
PRKDC-201ENST00000314191 QKIQ96PU8 341 aaKnown RBP eCLIP6.28□□□□□ -1.44e-9■■■■■ 31.9
PRKDC-201ENST00000314191 TARDBPQ13148 414 aaKnown RBP eCLIP5.96□□□□□ -1.457e-9■■■■■ 71.4
PRKDC-201ENST00000314191 SF3A3Q12874 501 aaKnown RBP eCLIP6.75□□□□□ -1.332e-8■■□□□ 14.4
PRKDC-201ENST00000314191 YBX3P16989 372 aaKnown RBP eCLIP6.39□□□□□ -1.392e-8■■□□□ 13.4
PRKDC-201ENST00000314191 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.21□□□□□ -1.253e-8■■■□□ 15
PRKDC-201ENST00000314191 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.11□□□□□ -1.113e-8■■■□□ 17.8
PRKDC-201ENST00000314191 XRCC6P12956 609 aaKnown RBP eCLIP7.3□□□□□ -1.245e-8■■■■□ 23.6
PRKDC-201ENST00000314191 TIA1P31483 386 aaKnown RBP eCLIP5.96□□□□□ -1.455e-8■■■■□ 23.4
PRKDC-201ENST00000314191 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.9□□□□□ -1.465e-8■■■□□ 18.5
PRKDC-201ENST00000314191 FMR1Q06787 632 aaKnown RBP eCLIP6.86□□□□□ -1.315e-8■■■■■ 29.5
PRKDC-201ENST00000314191 SMNDC1O75940 238 aaKnown RBP eCLIP6.2□□□□□ -1.426e-8■■■□□ 19.1
PRKDC-201ENST00000314191 EIF3DO15371 548 aaKnown RBP eCLIP6.65□□□□□ -1.357e-8■□□□□ 10.8
PRKDC-201ENST00000314191 PABPC4Q13310 644 aaKnown RBP eCLIP6.89□□□□□ -1.318e-8■■□□□ 13.1
PRKDC-201ENST00000314191 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.64□□□□□ -1.351e-7■■□□□ 12.5
PRKDC-201ENST00000314191 U2AF1Q01081 240 aaKnown RBP eCLIP8.06□□□□□ -1.121e-7■■■■□ 20.2
PRKDC-201ENST00000314191 RBFOX2O43251 390 aaKnown RBP eCLIP5.12□□□□□ -1.592e-7■■■■□ 25.6
PRKDC-201ENST00000314191 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.61□□□□□ -1.032e-7■■□□□ 12.9
PRKDC-201ENST00000314191 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.16□□□□□ -1.422e-7■■■■■ 36.1
PRKDC-201ENST00000314191 ZNF622Q969S3 477 aaKnown RBP eCLIP7.17□□□□□ -1.262e-7■□□□□ 9.2
PRKDC-201ENST00000314191 PTBP1P26599 531 aaKnown RBP eCLIP5.59□□□□□ -1.523e-7■■■■■ 31.8
PRKDC-201ENST00000314191 G3BP1Q13283 466 aaKnown RBP eCLIP7.6□□□□□ -1.193e-7■■■□□ 17.6
PRKDC-201ENST00000314191 DDX6P26196 483 aaKnown RBP eCLIP6.04□□□□□ -1.443e-7■■■■□ 22.2
PRKDC-201ENST00000314191 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7□□□□□ -1.293e-7■■■□□ 14.7
PRKDC-201ENST00000314191 PUM1Q14671 1186 aaKnown RBP eCLIP5.83□□□□□ -1.483e-7■■□□□ 13.4
PRKDC-201ENST00000314191 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.93□□□□□ -1.33e-7■■■■■ 34.2
PRKDC-201ENST00000314191 UPF1Q92900 1129 aaKnown RBP eCLIP6.36□□□□□ -1.394e-7■■■■□ 26.3
PRKDC-201ENST00000314191 SUB1P53999 127 aaKnown RBP eCLIP5.27□□□□□ -1.574e-7■■■■□ 20.8
PRKDC-201ENST00000314191 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.54□□□□□ -1.364e-7■■■□□ 15.8
PRKDC-201ENST00000314191 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.89□□□□□ -1.315e-7■■■■■ 66.1
PRKDC-201ENST00000314191 FXR1P51114 621 aaKnown RBP eCLIP6.8□□□□□ -1.325e-7■■■■□ 19.5
PRKDC-201ENST00000314191 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.09□□□□□ -1.436e-7■□□□□ 9.3
PRKDC-201ENST00000314191 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.38□□□□□ -1.396e-7■■■■■ 48.8
PRKDC-201ENST00000314191 RPS3P23396 243 aaKnown RBP eCLIP6□□□□□ -1.456e-7■■■■□ 19.9
PRKDC-201ENST00000314191 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.34□□□□□ -1.566e-7■■■■■ 34.8
PRKDC-201ENST00000314191 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.36□□□□□ -1.237e-7■■■□□ 19.1
PRKDC-201ENST00000314191 SND1Q7KZF4 910 aaKnown RBP eCLIP6.82□□□□□ -1.327e-7■■□□□ 11.8
PRKDC-201ENST00000314191 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.59□□□□□ -1.197e-7■■■□□ 16
PRKDC-201ENST00000314191 DKC1O60832 514 aaKnown RBP eCLIP6.81□□□□□ -1.328e-7■■■□□ 14.9
PRKDC-201ENST00000314191 AQRO60306 1485 aaKnown RBP eCLIP8.38□□□□□ -1.078e-7■■■■□ 20.7
PRKDC-201ENST00000314191 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.75□□□□□ -1.499e-7■■■□□ 15.3
PRKDC-201ENST00000314191 RBM15Q96T37 977 aaKnown RBP eCLIP6.54□□□□□ -1.361e-6■□□□□ 9.2
PRKDC-201ENST00000314191 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.49□□□□□ -1.531e-6■■■■■ 31.8
PRKDC-201ENST00000314191 EIF3HO15372 352 aaKnown RBP eCLIP6.52□□□□□ -1.371e-6■■□□□ 13.5
PRKDC-201ENST00000314191 PPIGQ13427 754 aaKnown RBP eCLIP6.13□□□□□ -1.431e-6■■□□□ 12.7
PRKDC-201ENST00000314191 NIPBLQ6KC79 2804 aaeCLIP3.58□□□□□ -1.841e-6■■□□□ 14.3
PRKDC-201ENST00000314191 PCBP2Q15366 365 aaKnown RBP eCLIP6.01□□□□□ -1.451e-6■■■■■ 30.8
PRKDC-201ENST00000314191 SF3B1O75533 1304 aaKnown RBP eCLIP6.27□□□□□ -1.411e-6■■■■■ 63.9
PRKDC-201ENST00000314191 HLTFQ14527 1009 aaKnown RBP eCLIP6.92□□□□□ -1.31e-6■□□□□ 10.8
PRKDC-201ENST00000314191 MATR3P43243 847 aaKnown RBP eCLIP6.98□□□□□ -1.291e-6■■■■■ 30.6
PRKDC-201ENST00000314191 AGGF1Q8N302 714 aaeCLIP6.38□□□□□ -1.391e-6■■■■□ 21.7
PRKDC-201ENST00000314191 KHSRPQ92945 711 aaKnown RBP eCLIP6.18□□□□□ -1.421e-6■■■□□ 18.8
PRKDC-201ENST00000314191 ILF3Q12906 894 aaKnown RBP eCLIP6.02□□□□□ -1.452e-6■■□□□ 13.8
PRKDC-201ENST00000314191 EIF4G2P78344 907 aaKnown RBP eCLIP8.55□□□□□ -1.042e-6■■■■■ 49
PRKDC-201ENST00000314191 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.47□□□□□ -1.372e-6■□□□□ 9.7
PRKDC-201ENST00000314191 RBM22Q9NW64 420 aaKnown RBP eCLIP6.4□□□□□ -1.392e-6■■■■■ 26.9
PRKDC-201ENST00000314191 PRPF4O43172 522 aaKnown RBP eCLIP6.28□□□□□ -1.42e-6■■□□□ 14.1
PRKDC-201ENST00000314191 HNRNPMP52272 730 aaKnown RBP eCLIP8.4□□□□□ -1.062e-6■■■■□ 24.1
PRKDC-201ENST00000314191 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.57□□□□□ -1.362e-6■■■■□ 19.8
PRKDC-201ENST00000314191 SF3B4Q15427 424 aaKnown RBP eCLIP5.62□□□□□ -1.512e-6■■■■□ 24.3
PRKDC-201ENST00000314191 METAP2P50579 478 aaKnown RBP eCLIP7.24□□□□□ -1.253e-6■■■□□ 17.3
PRKDC-201ENST00000314191 SRSF1Q07955 248 aaKnown RBP eCLIP4.85□□□□□ -1.633e-6■■■□□ 17.8
PRKDC-201ENST00000314191 FTOQ9C0B1 505 aaKnown RBP eCLIP7.1□□□□□ -1.273e-6■■□□□ 13.1
PRKDC-201ENST00000314191 EFTUD2Q15029 972 aaKnown RBP eCLIP6.36□□□□□ -1.393e-6■■□□□ 13.9
PRKDC-201ENST00000314191 TIAL1Q01085 375 aaKnown RBP eCLIP5.86□□□□□ -1.473e-6■■□□□ 12
PRKDC-201ENST00000314191 WDR43Q15061 677 aaKnown RBP eCLIP8.33□□□□□ -1.084e-6■■■■□ 26.5
PRKDC-201ENST00000314191 GPKOWQ92917 476 aaPredicted RBP eCLIP7.02□□□□□ -1.295e-6■■■□□ 15.9
PRKDC-201ENST00000314191 NOLC1Q14978 699 aaKnown RBP eCLIP7.13□□□□□ -1.275e-6■■■■□ 19.4
PRKDC-201ENST00000314191 NCBP2P52298 156 aaKnown RBP eCLIP5.98□□□□□ -1.456e-6■□□□□ 9.6
PRKDC-201ENST00000314191 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.6□□□□□ -1.356e-6■■■■□ 24.9
PRKDC-201ENST00000314191 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.28□□□□□ -1.47e-6■□□□□ 9.9
PRKDC-201ENST00000314191 AATFQ9NY61 560 aaKnown RBP eCLIP7.12□□□□□ -1.277e-6■■■□□ 14.6
PRKDC-201ENST00000314191 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.48□□□□□ -1.378e-6■■□□□ 11.7
PRKDC-201ENST00000314191 CPSF6Q16630 551 aaKnown RBP eCLIP6.2□□□□□ -1.428e-6■□□□□ 9.2
Retrieved 81 of 81 RNA–protein pairs in 15.5 ms