RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 PRG4Q92954 1404 aaPredicted RBP33.76■■■□□ 2.99
LIME1-201ENST00000309546 JPH4Q96JJ6 628 aa33.72■■■□□ 2.99
LIME1-201ENST00000309546 CARMIL1Q5VZK9 1371 aa33.61■■■□□ 2.97
LIME1-201ENST00000309546 KIAA0586Q9BVV6 1533 aa33.61■■■□□ 2.97
LIME1-201ENST00000309546 IQGAP2Q13576 1575 aa33.39■■■□□ 2.94
LIME1-201ENST00000309546 ADCY10Q96PN6 1610 aa33.37■■■□□ 2.93
LIME1-201ENST00000309546 RAPGEF2Q9Y4G8 1499 aa33.36■■■□□ 2.93
LIME1-201ENST00000309546 KIF13AQ9H1H9 1805 aa33.32■■■□□ 2.92
LIME1-201ENST00000309546 NPM1P06748 294 aaKnown RBP eCLIP33.31■■■□□ 2.92
LIME1-201ENST00000309546 TTBK1Q5TCY1 1321 aaPredicted RBP33.29■■■□□ 2.92
LIME1-201ENST00000309546 CARMIL2Q6F5E8 1435 aa33.29■■■□□ 2.92
LIME1-201ENST00000309546 PTPRGP23470 1445 aa33.26■■■□□ 2.91
LIME1-201ENST00000309546 MAPKBP1O60336 1514 aa33.23■■■□□ 2.91
LIME1-201ENST00000309546 TNIKQ9UKE5 1360 aa33.22■■■□□ 2.91
LIME1-201ENST00000309546 CTTNBP2Q8WZ74 1663 aa33.17■■■□□ 2.9
LIME1-201ENST00000309546 DISP1Q96F81 1524 aa33.17■■■□□ 2.9
LIME1-201ENST00000309546 ABCC10Q5T3U5 1492 aa33.15■■■□□ 2.9
LIME1-201ENST00000309546 UGGT2Q9NYU1 1516 aa33.15■■■□□ 2.9
LIME1-201ENST00000309546 DIP2BQ9P265 1576 aa33.13■■■□□ 2.89
LIME1-201ENST00000309546 FAM69CQ0P6D2 419 aa33.12■■■□□ 2.89
LIME1-201ENST00000309546 KIAA0556O60303 1618 aa33.1■■■□□ 2.89
LIME1-201ENST00000309546 PRXQ9BXM0 1461 aa33.06■■■□□ 2.88
LIME1-201ENST00000309546 ABCC2Q92887 1545 aa33.05■■■□□ 2.88
LIME1-201ENST00000309546 UACAQ9BZF9 1416 aa33.02■■■□□ 2.88
LIME1-201ENST00000309546 UHRF1BP1LA0JNW5 1464 aa32.99■■■□□ 2.87
LIME1-201ENST00000309546 TSPOAP1O95153 1857 aa32.97■■■□□ 2.87
LIME1-201ENST00000309546 GOLGA3Q08378 1498 aa32.93■■■□□ 2.86
LIME1-201ENST00000309546 ASXL2Q76L83 1435 aa32.92■■■□□ 2.86
LIME1-201ENST00000309546 PLB1Q6P1J6 1458 aa32.88■■■□□ 2.85
LIME1-201ENST00000309546 CSRNP3Q8WYN3 585 aa32.88■■■□□ 2.85
LIME1-201ENST00000309546 ZCCHC11Q5TAX3 1644 aaKnown RBP32.87■■■□□ 2.85
LIME1-201ENST00000309546 KDM5BQ9UGL1 1544 aa32.85■■■□□ 2.85
LIME1-201ENST00000309546 EEA1Q15075 1411 aa32.81■■■□□ 2.84
LIME1-201ENST00000309546 KDM6BO15054 1643 aa32.8■■■□□ 2.84
LIME1-201ENST00000309546 GLI2P10070 1586 aa32.78■■■□□ 2.84
LIME1-201ENST00000309546 ABCA8O94911 1581 aa32.75■■■□□ 2.83
LIME1-201ENST00000309546 FAM9AQ8IZU1 332 aaPredicted RBP32.74■■■□□ 2.83
LIME1-201ENST00000309546 AEBP2Q6ZN18 517 aaPredicted RBP32.72■■■□□ 2.83
LIME1-201ENST00000309546 EPRSP07814 1512 aaKnown RBP32.72■■■□□ 2.83
LIME1-201ENST00000309546 PPRC1Q5VV67 1664 aaKnown RBP32.71■■■□□ 2.83
LIME1-201ENST00000309546 P3H3Q8IVL6 736 aa32.69■■■□□ 2.82
LIME1-201ENST00000309546 WDR7Q9Y4E6 1490 aa32.65■■■□□ 2.82
LIME1-201ENST00000309546 SAMD9Q5K651 1589 aa32.65■■■□□ 2.82
LIME1-201ENST00000309546 MAP3K4Q9Y6R4 1608 aa32.65■■■□□ 2.82
LIME1-201ENST00000309546 KIF21BO75037 1637 aa32.59■■■□□ 2.81
LIME1-201ENST00000309546 RANGAP1P46060 587 aaPredicted RBP32.58■■■□□ 2.81
LIME1-201ENST00000309546 ARID3CA6NKF2 412 aa32.54■■■□□ 2.8
LIME1-201ENST00000309546 CHIC1Q5VXU3 224 aa32.54■■■□□ 2.8
LIME1-201ENST00000309546 TEX14Q8IWB6 1497 aa32.52■■■□□ 2.8
LIME1-201ENST00000309546 RAPGEF6Q8TEU7 1601 aa32.49■■■□□ 2.79
LIME1-201ENST00000309546 KCNH8Q96L42 1107 aa32.49■■■□□ 2.79
LIME1-201ENST00000309546 CFAP43Q8NDM7 1665 aa32.47■■■□□ 2.79
LIME1-201ENST00000309546 FHOD3Q2V2M9 1422 aa32.45■■■□□ 2.79
LIME1-201ENST00000309546 ATP10BO94823 1461 aa32.44■■■□□ 2.78
LIME1-201ENST00000309546 EHMT2Q96KQ7 1210 aa32.43■■■□□ 2.78
LIME1-201ENST00000309546 CD109Q6YHK3 1445 aa32.4■■■□□ 2.78
LIME1-201ENST00000309546 COL17A1Q9UMD9 1497 aaPredicted RBP32.4■■■□□ 2.78
LIME1-201ENST00000309546 EFCAB5A4FU69 1503 aa32.38■■■□□ 2.77
LIME1-201ENST00000309546 MAGI3Q5TCQ9 1506 aa32.36■■■□□ 2.77
LIME1-201ENST00000309546 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.34■■■□□ 2.77
LIME1-201ENST00000309546 HNRNPUL2Q1KMD3 747 aaKnown RBP32.34■■■□□ 2.77
LIME1-201ENST00000309546 NUP153P49790 1475 aaKnown RBP32.32■■■□□ 2.76
LIME1-201ENST00000309546 UBTFP17480 764 aaKnown RBP32.32■■■□□ 2.76
LIME1-201ENST00000309546 ABCA9Q8IUA7 1624 aa32.26■■■□□ 2.75
LIME1-201ENST00000309546 KDM4FA0A1W2PPD8 638 aa32.23■■■□□ 2.75
LIME1-201ENST00000309546 ADGRL1O94910 1474 aa32.13■■■□□ 2.73
LIME1-201ENST00000309546 ARHGAP35Q9NRY4 1499 aa32.12■■■□□ 2.73
LIME1-201ENST00000309546 PLEKHD1A6NEE1 506 aa32.1■■■□□ 2.73
LIME1-201ENST00000309546 CDK13Q14004 1512 aaKnown RBP32.09■■■□□ 2.73
LIME1-201ENST00000309546 ARAP3Q8WWN8 1544 aa32.08■■■□□ 2.73
LIME1-201ENST00000309546 FMN1Q68DA7 1419 aa32.07■■■□□ 2.72
LIME1-201ENST00000309546 HECW1Q76N89 1606 aa32.06■■■□□ 2.72
LIME1-201ENST00000309546 ATP1B4Q9UN42 357 aaPredicted RBP32.04■■■□□ 2.72
LIME1-201ENST00000309546 NEO1Q92859 1461 aa32.03■■■□□ 2.72
LIME1-201ENST00000309546 PHLDB1Q86UU1 1377 aa32.02■■■□□ 2.72
LIME1-201ENST00000309546 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32■■■□□ 2.71
LIME1-201ENST00000309546 TTC37Q6PGP7 1564 aa31.98■■■□□ 2.71
LIME1-201ENST00000309546 RAPGEF3O95398 923 aa31.92■■■□□ 2.7
LIME1-201ENST00000309546 CFAP74Q9C0B2 1584 aa31.92■■■□□ 2.7
LIME1-201ENST00000309546 FRMPD1Q5SYB0 1578 aa31.9■■■□□ 2.7
LIME1-201ENST00000309546 FANCAO15360 1455 aa31.89■■■□□ 2.7
LIME1-201ENST00000309546 LRRIQ1Q96JM4 1722 aa31.88■■■□□ 2.69
LIME1-201ENST00000309546 AKNAQ7Z591 1439 aa31.84■■■□□ 2.69
LIME1-201ENST00000309546 PCF11O94913 1555 aaKnown RBP31.83■■■□□ 2.69
LIME1-201ENST00000309546 CDK11AQ9UQ88 783 aaPredicted RBP31.82■■■□□ 2.68
LIME1-201ENST00000309546 RICTORQ6R327 1708 aa31.82■■■□□ 2.68
LIME1-201ENST00000309546 DENND4BO75064 1496 aaPredicted RBP31.82■■■□□ 2.68
LIME1-201ENST00000309546 MYO5CQ9NQX4 1742 aa31.8■■■□□ 2.68
LIME1-201ENST00000309546 KIF14Q15058 1648 aa31.8■■■□□ 2.68
LIME1-201ENST00000309546 PLCH2O75038 1416 aa31.75■■■□□ 2.67
LIME1-201ENST00000309546 TROQ12816 1431 aaPredicted RBP31.75■■■□□ 2.67
LIME1-201ENST00000309546 CLIP1P30622 1438 aa31.75■■■□□ 2.67
LIME1-201ENST00000309546 CASKIN1Q8WXD9 1431 aa31.74■■■□□ 2.67
LIME1-201ENST00000309546 ARHGEF40Q8TER5 1519 aa31.73■■■□□ 2.67
LIME1-201ENST00000309546 CCDC18Q5T9S5 1454 aa31.71■■■□□ 2.67
LIME1-201ENST00000309546 ZMYM4Q5VZL5 1548 aa31.67■■■□□ 2.66
LIME1-201ENST00000309546 ARID4BQ4LE39 1312 aaPredicted RBP31.67■■■□□ 2.66
LIME1-201ENST00000309546 FYCO1Q9BQS8 1478 aa31.66■■■□□ 2.66
LIME1-201ENST00000309546 SCAPERQ9BY12 1400 aa31.66■■■□□ 2.66
LIME1-201ENST00000309546 ARHGAP5Q13017 1502 aa31.65■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms