RNA–Protein interactions for RNA: ENST00000309279.11

CHD6-201, Transcript of chromodomain helicase DNA binding protein 6, humanhuman

TSL 1 (best) BASIC

Gene CHD6, Length 1,635 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD6-201ENST00000309279 OSCARQ8IYS5 282 aa13.61□□□□□ -0.23
CHD6-201ENST00000309279 FBLN2P98095 1184 aa13.6□□□□□ -0.23
CHD6-201ENST00000309279 EEA1Q15075 1411 aa13.59□□□□□ -0.23
CHD6-201ENST00000309279 CARMIL1Q5VZK9 1371 aa13.58□□□□□ -0.23
CHD6-201ENST00000309279 GRIN2AQ12879 1464 aa13.57□□□□□ -0.24
CHD6-201ENST00000309279 CSRNP3Q8WYN3 585 aa13.55□□□□□ -0.24
CHD6-201ENST00000309279 PRXQ9BXM0 1461 aa13.53□□□□□ -0.24
CHD6-201ENST00000309279 NUP160Q12769 1436 aa13.53□□□□□ -0.24
CHD6-201ENST00000309279 DNAJC5Q9H3Z4 198 aa13.53□□□□□ -0.24
CHD6-201ENST00000309279 RAPGEF2Q9Y4G8 1499 aa13.52□□□□□ -0.25
CHD6-201ENST00000309279 AEBP2Q6ZN18 517 aaPredicted RBP13.51□□□□□ -0.25
CHD6-201ENST00000309279 CEP170Q5SW79 1584 aa13.5□□□□□ -0.25
CHD6-201ENST00000309279 CLASP1Q7Z460 1538 aa13.49□□□□□ -0.25
CHD6-201ENST00000309279 FAM9AQ8IZU1 332 aaPredicted RBP13.48□□□□□ -0.25
CHD6-201ENST00000309279 KIAA0586Q9BVV6 1533 aa13.43□□□□□ -0.26
CHD6-201ENST00000309279 KIF21BO75037 1637 aa13.43□□□□□ -0.26
CHD6-201ENST00000309279 SHROOM2Q13796 1616 aa13.4□□□□□ -0.26
CHD6-201ENST00000309279 JPH4Q96JJ6 628 aa13.39□□□□□ -0.27
CHD6-201ENST00000309279 TIMELESSQ9UNS1 1208 aa13.38□□□□□ -0.27
CHD6-201ENST00000309279 CTTNBP2Q8WZ74 1663 aa13.37□□□□□ -0.27
CHD6-201ENST00000309279 IQGAP2Q13576 1575 aa13.37□□□□□ -0.27
CHD6-201ENST00000309279 ARHGEF11O15085 1522 aa13.37□□□□□ -0.27
CHD6-201ENST00000309279 GOLGA3Q08378 1498 aa13.35□□□□□ -0.27
CHD6-201ENST00000309279 RIMBP3CA6NJZ7 1639 aa13.35□□□□□ -0.27
CHD6-201ENST00000309279 RIMBP3BA6NNM3 1639 aa13.35□□□□□ -0.27
CHD6-201ENST00000309279 RIMBP3Q9UFD9 1639 aa13.35□□□□□ -0.27
CHD6-201ENST00000309279 PRG4Q92954 1404 aaPredicted RBP13.32□□□□□ -0.28
CHD6-201ENST00000309279 UGGT2Q9NYU1 1516 aa13.32□□□□□ -0.28
CHD6-201ENST00000309279 ERCC6L2Q5T890 1561 aa13.31□□□□□ -0.28
CHD6-201ENST00000309279 UBTFP17480 764 aaKnown RBP13.28□□□□□ -0.28
CHD6-201ENST00000309279 DISP1Q96F81 1524 aa13.28□□□□□ -0.28
CHD6-201ENST00000309279 ARAP1Q96P48 1450 aa13.27□□□□□ -0.28
CHD6-201ENST00000309279 PHF23Q9BUL5 403 aaPredicted RBP13.27□□□□□ -0.29
CHD6-201ENST00000309279 CARMIL2Q6F5E8 1435 aa13.26□□□□□ -0.29
CHD6-201ENST00000309279 KIAA0556O60303 1618 aa13.24□□□□□ -0.29
CHD6-201ENST00000309279 TNIKQ9UKE5 1360 aa13.23□□□□□ -0.29
CHD6-201ENST00000309279 CYB5RLQ6IPT4 315 aa13.23□□□□□ -0.29
CHD6-201ENST00000309279 SAMD9Q5K651 1589 aa13.22□□□□□ -0.29
CHD6-201ENST00000309279 RANGAP1P46060 587 aaPredicted RBP13.22□□□□□ -0.29
CHD6-201ENST00000309279 LOC105371045A0A1W2PR82 267 aa13.2□□□□□ -0.3
CHD6-201ENST00000309279 PTPRGP23470 1445 aa13.19□□□□□ -0.3
CHD6-201ENST00000309279 EFCAB5A4FU69 1503 aa13.19□□□□□ -0.3
CHD6-201ENST00000309279 TAOK2Q9UL54 1235 aa13.18□□□□□ -0.3
CHD6-201ENST00000309279 HOMEZQ8IX15 550 aa13.16□□□□□ -0.3
CHD6-201ENST00000309279 ARHGAP35Q9NRY4 1499 aa13.15□□□□□ -0.3
CHD6-201ENST00000309279 TULP1O00294 542 aaPredicted RBP13.14□□□□□ -0.31
CHD6-201ENST00000309279 P3H3Q8IVL6 736 aa13.14□□□□□ -0.31
CHD6-201ENST00000309279 FHOD3Q2V2M9 1422 aa13.12□□□□□ -0.31
CHD6-201ENST00000309279 CLIP1P30622 1438 aa13.11□□□□□ -0.31
CHD6-201ENST00000309279 UACAQ9BZF9 1416 aa13.11□□□□□ -0.31
CHD6-201ENST00000309279 UHRF1BP1LA0JNW5 1464 aa13.11□□□□□ -0.31
CHD6-201ENST00000309279 ADCY10Q96PN6 1610 aa13.11□□□□□ -0.31
CHD6-201ENST00000309279 ABCA8O94911 1581 aa13.1□□□□□ -0.31
CHD6-201ENST00000309279 CEP162Q5TB80 1403 aa13.09□□□□□ -0.31
CHD6-201ENST00000309279 PLB1Q6P1J6 1458 aa13.09□□□□□ -0.31
CHD6-201ENST00000309279 ABCC2Q92887 1545 aa13.09□□□□□ -0.31
CHD6-201ENST00000309279 FMN1Q68DA7 1419 aa13.07□□□□□ -0.32
CHD6-201ENST00000309279 KDM5BQ9UGL1 1544 aa13.05□□□□□ -0.32
CHD6-201ENST00000309279 RAPGEF6Q8TEU7 1601 aa13.05□□□□□ -0.32
CHD6-201ENST00000309279 NPM1P06748 294 aaKnown RBP eCLIP13.03□□□□□ -0.32
CHD6-201ENST00000309279 BCANQ96GW7 911 aa13.02□□□□□ -0.32
CHD6-201ENST00000309279 NUP153P49790 1475 aaKnown RBP13.01□□□□□ -0.33
CHD6-201ENST00000309279 MAPKBP1O60336 1514 aa13.01□□□□□ -0.33
CHD6-201ENST00000309279 ZCCHC11Q5TAX3 1644 aaKnown RBP13□□□□□ -0.33
CHD6-201ENST00000309279 ATP10BO94823 1461 aa12.99□□□□□ -0.33
CHD6-201ENST00000309279 CASKIN1Q8WXD9 1431 aa12.99□□□□□ -0.33
CHD6-201ENST00000309279 HECW1Q76N89 1606 aa12.97□□□□□ -0.33
CHD6-201ENST00000309279 FYCO1Q9BQS8 1478 aa12.96□□□□□ -0.33
CHD6-201ENST00000309279 PCF11O94913 1555 aaKnown RBP12.96□□□□□ -0.34
CHD6-201ENST00000309279 ASXL2Q76L83 1435 aa12.95□□□□□ -0.34
CHD6-201ENST00000309279 EPRSP07814 1512 aaKnown RBP12.94□□□□□ -0.34
CHD6-201ENST00000309279 VPS8Q8N3P4 1428 aa12.94□□□□□ -0.34
CHD6-201ENST00000309279 LRRIQ1Q96JM4 1722 aa12.94□□□□□ -0.34
CHD6-201ENST00000309279 ARID3CA6NKF2 412 aa12.92□□□□□ -0.34
CHD6-201ENST00000309279 ABCC10Q5T3U5 1492 aa12.92□□□□□ -0.34
CHD6-201ENST00000309279 TPRNQ4KMQ1 711 aa12.91□□□□□ -0.34
CHD6-201ENST00000309279 KLHL34Q8N239 644 aa12.91□□□□□ -0.34
CHD6-201ENST00000309279 ATP1B4Q9UN42 357 aaPredicted RBP12.91□□□□□ -0.34
CHD6-201ENST00000309279 WDR7Q9Y4E6 1490 aa12.91□□□□□ -0.34
CHD6-201ENST00000309279 CDK13Q14004 1512 aaKnown RBP12.91□□□□□ -0.34
CHD6-201ENST00000309279 EIF5BO60841 1220 aaKnown RBP12.91□□□□□ -0.34
CHD6-201ENST00000309279 CCDC18Q5T9S5 1454 aa12.91□□□□□ -0.34
CHD6-201ENST00000309279 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.9□□□□□ -0.34
CHD6-201ENST00000309279 HNRNPUL2Q1KMD3 747 aaKnown RBP12.9□□□□□ -0.34
CHD6-201ENST00000309279 KIF13AQ9H1H9 1805 aa12.9□□□□□ -0.34
CHD6-201ENST00000309279 DIP2BQ9P265 1576 aa12.89□□□□□ -0.35
CHD6-201ENST00000309279 PLEKHD1A6NEE1 506 aa12.88□□□□□ -0.35
CHD6-201ENST00000309279 TRHP20396 242 aaPredicted RBP12.88□□□□□ -0.35
CHD6-201ENST00000309279 CDK11AQ9UQ88 783 aaPredicted RBP12.88□□□□□ -0.35
CHD6-201ENST00000309279 GLI2P10070 1586 aa12.87□□□□□ -0.35
CHD6-201ENST00000309279 FAM69CQ0P6D2 419 aa12.87□□□□□ -0.35
CHD6-201ENST00000309279 KCNH8Q96L42 1107 aa12.84□□□□□ -0.35
CHD6-201ENST00000309279 MAP3K1Q13233 1512 aa12.84□□□□□ -0.35
CHD6-201ENST00000309279 PODXL2Q9NZ53 605 aa12.84□□□□□ -0.35
CHD6-201ENST00000309279 TROQ12816 1431 aaPredicted RBP12.83□□□□□ -0.36
CHD6-201ENST00000309279 MAGI3Q5TCQ9 1506 aa12.82□□□□□ -0.36
CHD6-201ENST00000309279 MAP3K4Q9Y6R4 1608 aa12.82□□□□□ -0.36
CHD6-201ENST00000309279 CFAP43Q8NDM7 1665 aa12.82□□□□□ -0.36
CHD6-201ENST00000309279 TIAM1Q13009 1591 aa12.81□□□□□ -0.36
CHD6-201ENST00000309279 ABCA9Q8IUA7 1624 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms