RNA–Protein interactions for RNA: ENST00000302190.8

SDC2-201, Transcript of syndecan 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC2, Length 3,759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-201ENST00000302190 GOLGA3Q08378 1498 aa20.17■□□□□ 0.82
SDC2-201ENST00000302190 HIRIP3Q9BW71 556 aaPredicted RBP20.16■□□□□ 0.82
SDC2-201ENST00000302190 TNIKQ9UKE5 1360 aa20.16■□□□□ 0.82
SDC2-201ENST00000302190 EEA1Q15075 1411 aa20.16■□□□□ 0.82
SDC2-201ENST00000302190 POLR3GLQ9BT43 218 aa20.15■□□□□ 0.82
SDC2-201ENST00000302190 ZNF608Q9ULD9 1512 aaPredicted RBP20.15■□□□□ 0.82
SDC2-201ENST00000302190 CARMIL1Q5VZK9 1371 aa20.15■□□□□ 0.82
SDC2-201ENST00000302190 BCL11AQ9H165 835 aa20.15■□□□□ 0.82
SDC2-201ENST00000302190 MRC2Q9UBG0 1479 aa20.14■□□□□ 0.82
SDC2-201ENST00000302190 CLIP1P30622 1438 aa20.13■□□□□ 0.81
SDC2-201ENST00000302190 ARID3CA6NKF2 412 aa20.09■□□□□ 0.81
SDC2-201ENST00000302190 DDX10Q13206 875 aaKnown RBP20.05■□□□□ 0.8
SDC2-201ENST00000302190 GAPVD1Q14C86 1478 aa20.05■□□□□ 0.8
SDC2-201ENST00000302190 PRXQ9BXM0 1461 aa20.02■□□□□ 0.8
SDC2-201ENST00000302190 ERICH6Q7L0X2 663 aa20.02■□□□□ 0.8
SDC2-201ENST00000302190 ABCA10Q8WWZ4 1543 aa20.02■□□□□ 0.79
SDC2-201ENST00000302190 CHMP7Q8WUX9 453 aaPredicted RBP19.95■□□□□ 0.78
SDC2-201ENST00000302190 KIF21BO75037 1637 aa19.95■□□□□ 0.78
SDC2-201ENST00000302190 TRIM52Q96A61 297 aa19.94■□□□□ 0.78
SDC2-201ENST00000302190 TARBP1Q13395 1621 aaKnown RBP19.92■□□□□ 0.78
SDC2-201ENST00000302190 KANK4Q5T7N3 995 aaPredicted RBP19.91■□□□□ 0.78
SDC2-201ENST00000302190 THOC2Q8NI27 1593 aaKnown RBP19.9■□□□□ 0.78
SDC2-201ENST00000302190 WDR62O43379 1518 aa19.9■□□□□ 0.78
SDC2-201ENST00000302190 FKBP8Q14318 412 aa19.89■□□□□ 0.78
SDC2-201ENST00000302190 ANP32CO43423 234 aa19.86■□□□□ 0.77
SDC2-201ENST00000302190 SNAPC4Q5SXM2 1469 aa19.84■□□□□ 0.77
SDC2-201ENST00000302190 IFT140Q96RY7 1462 aa19.84■□□□□ 0.77
SDC2-201ENST00000302190 SIN3AQ96ST3 1273 aa19.83■□□□□ 0.76
SDC2-201ENST00000302190 ARAP1Q96P48 1450 aa19.82■□□□□ 0.76
SDC2-201ENST00000302190 FHOD3Q2V2M9 1422 aa19.82■□□□□ 0.76
SDC2-201ENST00000302190 ZNF326Q5BKZ1 582 aaKnown RBP19.8■□□□□ 0.76
SDC2-201ENST00000302190 ABCA5Q8WWZ7 1642 aa19.8■□□□□ 0.76
SDC2-201ENST00000302190 WDR97A6NE52 1622 aa19.79■□□□□ 0.76
SDC2-201ENST00000302190 EIF4G3O43432 1585 aaKnown RBP19.78■□□□□ 0.76
SDC2-201ENST00000302190 ERICH3Q5RHP9 1530 aa19.78■□□□□ 0.76
SDC2-201ENST00000302190 ANP32EQ9BTT0 268 aa19.78■□□□□ 0.76
SDC2-201ENST00000302190 CHIC2Q9UKJ5 165 aa19.78■□□□□ 0.76
SDC2-201ENST00000302190 GRIN2BQ13224 1484 aa19.77■□□□□ 0.76
SDC2-201ENST00000302190 VPS8Q8N3P4 1428 aa19.77■□□□□ 0.76
SDC2-201ENST00000302190 ARHGAP35Q9NRY4 1499 aa19.77■□□□□ 0.75
SDC2-201ENST00000302190 IRX6P78412 446 aaPredicted RBP19.75■□□□□ 0.75
SDC2-201ENST00000302190 PBRM1Q86U86 1689 aa19.73■□□□□ 0.75
SDC2-201ENST00000302190 SENP3-EIF4A1A0A087X0R7 540 aa19.72■□□□□ 0.75
SDC2-201ENST00000302190 KCNH8Q96L42 1107 aa19.7■□□□□ 0.74
SDC2-201ENST00000302190 FHAD1B1AJZ9 1412 aa19.69■□□□□ 0.74
SDC2-201ENST00000302190 HNRNPUQ00839 825 aaKnown RBP eCLIP19.66■□□□□ 0.74
SDC2-201ENST00000302190 SUPT16HQ9Y5B9 1047 aaKnown RBP19.65■□□□□ 0.74
SDC2-201ENST00000302190 PRKCSHP14314 528 aaPredicted RBP19.65■□□□□ 0.74
SDC2-201ENST00000302190 CUL7Q14999 1698 aa19.64■□□□□ 0.73
SDC2-201ENST00000302190 TONSLQ96HA7 1378 aa19.62■□□□□ 0.73
SDC2-201ENST00000302190 ADAMTS12P58397 1594 aa19.61■□□□□ 0.73
SDC2-201ENST00000302190 JPH4Q96JJ6 628 aa19.6■□□□□ 0.73
SDC2-201ENST00000302190 FAM9BQ8IZU0 186 aa19.59■□□□□ 0.73
SDC2-201ENST00000302190 RRP7BPQ9NSQ0 103 aa19.59■□□□□ 0.73
SDC2-201ENST00000302190 GRIN2AQ12879 1464 aa19.58■□□□□ 0.73
SDC2-201ENST00000302190 ZNF777Q9ULD5 760 aaPredicted RBP19.54■□□□□ 0.72
SDC2-201ENST00000302190 CCNB3Q8WWL7 1395 aa19.54■□□□□ 0.72
SDC2-201ENST00000302190 SYNJ2O15056 1496 aa19.52■□□□□ 0.72
SDC2-201ENST00000302190 CTTNBP2Q8WZ74 1663 aa19.52■□□□□ 0.71
SDC2-201ENST00000302190 CDK11AQ9UQ88 783 aaPredicted RBP19.48■□□□□ 0.71
SDC2-201ENST00000302190 CEP170Q5SW79 1584 aa19.48■□□□□ 0.71
SDC2-201ENST00000302190 MAGI1Q96QZ7 1491 aaPredicted RBP19.48■□□□□ 0.71
SDC2-201ENST00000302190 IQGAP2Q13576 1575 aa19.47■□□□□ 0.71
SDC2-201ENST00000302190 MTUS2Q5JR59 1369 aa19.47■□□□□ 0.71
SDC2-201ENST00000302190 SALL2Q9Y467 1007 aaPredicted RBP19.45■□□□□ 0.7
SDC2-201ENST00000302190 DHX57Q6P158 1386 aaKnown RBP19.45■□□□□ 0.7
SDC2-201ENST00000302190 PCF11O94913 1555 aaKnown RBP19.45■□□□□ 0.7
SDC2-201ENST00000302190 RAB3GAP2Q9H2M9 1393 aa19.43■□□□□ 0.7
SDC2-201ENST00000302190 KIAA0586Q9BVV6 1533 aa19.41■□□□□ 0.7
SDC2-201ENST00000302190 CHD1O14646 1710 aa19.4■□□□□ 0.7
SDC2-201ENST00000302190 MYT1LQ9UL68 1186 aa19.38■□□□□ 0.69
SDC2-201ENST00000302190 PRG4Q92954 1404 aaPredicted RBP19.38■□□□□ 0.69
SDC2-201ENST00000302190 TSHZ2Q9NRE2 1034 aa19.38■□□□□ 0.69
SDC2-201ENST00000302190 PLB1Q6P1J6 1458 aa19.37■□□□□ 0.69
SDC2-201ENST00000302190 PHLDB1Q86UU1 1377 aa19.37■□□□□ 0.69
SDC2-201ENST00000302190 CLSPNQ9HAW4 1339 aa19.37■□□□□ 0.69
SDC2-201ENST00000302190 CDK13Q14004 1512 aaKnown RBP19.36■□□□□ 0.69
SDC2-201ENST00000302190 MRS2Q9HD23 443 aa19.35■□□□□ 0.69
SDC2-201ENST00000302190 DISP1Q96F81 1524 aa19.35■□□□□ 0.69
SDC2-201ENST00000302190 FOXD1Q16676 465 aa19.35■□□□□ 0.69
SDC2-201ENST00000302190 FMN1Q68DA7 1419 aa19.34■□□□□ 0.69
SDC2-201ENST00000302190 ERCC6L2Q5T890 1561 aa19.33■□□□□ 0.68
SDC2-201ENST00000302190 NUP160Q12769 1436 aa19.3■□□□□ 0.68
SDC2-201ENST00000302190 EFCAB5A4FU69 1503 aa19.29■□□□□ 0.68
SDC2-201ENST00000302190 KDM2AQ9Y2K7 1162 aa19.29■□□□□ 0.68
SDC2-201ENST00000302190 CASKIN1Q8WXD9 1431 aa19.28■□□□□ 0.68
SDC2-201ENST00000302190 SAMD9Q5K651 1589 aa19.28■□□□□ 0.68
SDC2-201ENST00000302190 LRRC9Q6ZRR7 1453 aa19.27■□□□□ 0.68
SDC2-201ENST00000302190 OSCARQ8IYS5 282 aa19.27■□□□□ 0.68
SDC2-201ENST00000302190 TIAM1Q13009 1591 aa19.26■□□□□ 0.67
SDC2-201ENST00000302190 CARMIL2Q6F5E8 1435 aa19.26■□□□□ 0.67
SDC2-201ENST00000302190 SETD5Q9C0A6 1442 aa19.26■□□□□ 0.67
SDC2-201ENST00000302190 NPM2Q86SE8 214 aaKnown RBP19.25■□□□□ 0.67
SDC2-201ENST00000302190 EIF4G2P78344 907 aaKnown RBP eCLIP19.25■□□□□ 0.67
SDC2-201ENST00000302190 KIAA0556O60303 1618 aa19.25■□□□□ 0.67
SDC2-201ENST00000302190 PTPRGP23470 1445 aa19.24■□□□□ 0.67
SDC2-201ENST00000302190 SLC4A1APQ9BWU0 796 aaKnown RBP19.22■□□□□ 0.67
SDC2-201ENST00000302190 UGGT2Q9NYU1 1516 aa19.22■□□□□ 0.67
SDC2-201ENST00000302190 ZNF644Q9H582 1327 aaPredicted RBP19.22■□□□□ 0.67
SDC2-201ENST00000302190 LRRIQ1Q96JM4 1722 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms