RNA–Protein interactions for RNA: ENST00000266679.8

CPSF6-201, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 1 (best) BASIC

Gene CPSF6, Length 2,229 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-201ENST00000266679 RANGAP1P46060 587 aaPredicted RBP19.71■□□□□ 0.75
CPSF6-201ENST00000266679 ARHGEF11O15085 1522 aa19.71■□□□□ 0.75
CPSF6-201ENST00000266679 PRXQ9BXM0 1461 aa19.69■□□□□ 0.74
CPSF6-201ENST00000266679 KIF27Q86VH2 1401 aa19.66■□□□□ 0.74
CPSF6-201ENST00000266679 ABCA5Q8WWZ7 1642 aa19.66■□□□□ 0.74
CPSF6-201ENST00000266679 GRIN2BQ13224 1484 aa19.65■□□□□ 0.74
CPSF6-201ENST00000266679 ABCA10Q8WWZ4 1543 aa19.64■□□□□ 0.73
CPSF6-201ENST00000266679 GAPVD1Q14C86 1478 aa19.64■□□□□ 0.73
CPSF6-201ENST00000266679 MAGI1Q96QZ7 1491 aaPredicted RBP19.63■□□□□ 0.73
CPSF6-201ENST00000266679 CHMP7Q8WUX9 453 aaPredicted RBP19.59■□□□□ 0.73
CPSF6-201ENST00000266679 APLP2Q06481 763 aa19.58■□□□□ 0.73
CPSF6-201ENST00000266679 SYNJ2O15056 1496 aa19.58■□□□□ 0.72
CPSF6-201ENST00000266679 ARAP1Q96P48 1450 aa19.58■□□□□ 0.72
CPSF6-201ENST00000266679 CLASP1Q7Z460 1538 aa19.57■□□□□ 0.72
CPSF6-201ENST00000266679 CYB5RLQ6IPT4 315 aa19.52■□□□□ 0.72
CPSF6-201ENST00000266679 HNRNPUL2Q1KMD3 747 aaKnown RBP19.5■□□□□ 0.71
CPSF6-201ENST00000266679 ADAMTS12P58397 1594 aa19.5■□□□□ 0.71
CPSF6-201ENST00000266679 GRIN2AQ12879 1464 aa19.44■□□□□ 0.7
CPSF6-201ENST00000266679 CEP170Q5SW79 1584 aa19.42■□□□□ 0.7
CPSF6-201ENST00000266679 ARHGAP35Q9NRY4 1499 aa19.42■□□□□ 0.7
CPSF6-201ENST00000266679 IGF1RP08069 1367 aa19.42■□□□□ 0.7
CPSF6-201ENST00000266679 ERCC6L2Q5T890 1561 aa19.37■□□□□ 0.69
CPSF6-201ENST00000266679 FHAD1B1AJZ9 1412 aa19.36■□□□□ 0.69
CPSF6-201ENST00000266679 CARMIL1Q5VZK9 1371 aa19.35■□□□□ 0.69
CPSF6-201ENST00000266679 KANK4Q5T7N3 995 aaPredicted RBP19.35■□□□□ 0.69
CPSF6-201ENST00000266679 NUP160Q12769 1436 aa19.33■□□□□ 0.68
CPSF6-201ENST00000266679 SHROOM2Q13796 1616 aa19.27■□□□□ 0.68
CPSF6-201ENST00000266679 TRHP20396 242 aaPredicted RBP19.25■□□□□ 0.67
CPSF6-201ENST00000266679 DIEXFQ68CQ4 756 aaKnown RBP19.25■□□□□ 0.67
CPSF6-201ENST00000266679 RRBP1Q9P2E9 1410 aaKnown RBP19.23■□□□□ 0.67
CPSF6-201ENST00000266679 TIAM1Q13009 1591 aa19.21■□□□□ 0.67
CPSF6-201ENST00000266679 CUL7Q14999 1698 aa19.2■□□□□ 0.66
CPSF6-201ENST00000266679 ZNF316A6NFI3 1004 aaPredicted RBP19.18■□□□□ 0.66
CPSF6-201ENST00000266679 CTTNBP2Q8WZ74 1663 aa19.17■□□□□ 0.66
CPSF6-201ENST00000266679 PCF11O94913 1555 aaKnown RBP19.16■□□□□ 0.66
CPSF6-201ENST00000266679 PRG4Q92954 1404 aaPredicted RBP19.16■□□□□ 0.66
CPSF6-201ENST00000266679 CCNB3Q8WWL7 1395 aa19.15■□□□□ 0.66
CPSF6-201ENST00000266679 MAP3K1Q13233 1512 aa19.15■□□□□ 0.66
CPSF6-201ENST00000266679 CFAP43Q8NDM7 1665 aa19.15■□□□□ 0.66
CPSF6-201ENST00000266679 DHX57Q6P158 1386 aaKnown RBP19.12■□□□□ 0.65
CPSF6-201ENST00000266679 P3H3Q8IVL6 736 aa19.12■□□□□ 0.65
CPSF6-201ENST00000266679 JPH4Q96JJ6 628 aa19.11■□□□□ 0.65
CPSF6-201ENST00000266679 FHOD3Q2V2M9 1422 aa19.1■□□□□ 0.65
CPSF6-201ENST00000266679 LRRC9Q6ZRR7 1453 aa19.1■□□□□ 0.65
CPSF6-201ENST00000266679 EFCAB5A4FU69 1503 aa19.09■□□□□ 0.65
CPSF6-201ENST00000266679 ITGAEP38570 1179 aa19.06■□□□□ 0.64
CPSF6-201ENST00000266679 SCAF1Q9H7N4 1312 aaKnown RBP19.05■□□□□ 0.64
CPSF6-201ENST00000266679 KIAA0586Q9BVV6 1533 aa19.04■□□□□ 0.64
CPSF6-201ENST00000266679 CLSPNQ9HAW4 1339 aa19.03■□□□□ 0.64
CPSF6-201ENST00000266679 ATP1B4Q9UN42 357 aaPredicted RBP19.03■□□□□ 0.64
CPSF6-201ENST00000266679 FYCO1Q9BQS8 1478 aa19.03■□□□□ 0.64
CPSF6-201ENST00000266679 PHLDB1Q86UU1 1377 aa19.01■□□□□ 0.63
CPSF6-201ENST00000266679 CASKIN1Q8WXD9 1431 aa18.98■□□□□ 0.63
CPSF6-201ENST00000266679 ADCY10Q96PN6 1610 aa18.98■□□□□ 0.63
CPSF6-201ENST00000266679 KIF13AQ9H1H9 1805 aa18.97■□□□□ 0.63
CPSF6-201ENST00000266679 IQGAP2Q13576 1575 aa18.96■□□□□ 0.63
CPSF6-201ENST00000266679 ACIN1Q9UKV3 1341 aaKnown RBP18.96■□□□□ 0.63
CPSF6-201ENST00000266679 SAMD9Q5K651 1589 aa18.95■□□□□ 0.62
CPSF6-201ENST00000266679 RAB3GAP2Q9H2M9 1393 aa18.94■□□□□ 0.62
CPSF6-201ENST00000266679 NEUROD1Q13562 356 aa18.94■□□□□ 0.62
CPSF6-201ENST00000266679 FAM50AQ14320 339 aaKnown RBP18.92■□□□□ 0.62
CPSF6-201ENST00000266679 FMN1Q68DA7 1419 aa18.92■□□□□ 0.62
CPSF6-201ENST00000266679 LRRIQ1Q96JM4 1722 aa18.91■□□□□ 0.62
CPSF6-201ENST00000266679 CENPBP07199 599 aaPredicted RBP18.9■□□□□ 0.62
CPSF6-201ENST00000266679 SETD5Q9C0A6 1442 aa18.88■□□□□ 0.61
CPSF6-201ENST00000266679 MAPKBP1O60336 1514 aa18.87■□□□□ 0.61
CPSF6-201ENST00000266679 MIER1Q8N108 512 aa18.86■□□□□ 0.61
CPSF6-201ENST00000266679 DISP1Q96F81 1524 aa18.85■□□□□ 0.61
CPSF6-201ENST00000266679 PTPRGP23470 1445 aa18.84■□□□□ 0.61
CPSF6-201ENST00000266679 CARMIL2Q6F5E8 1435 aa18.83■□□□□ 0.61
CPSF6-201ENST00000266679 DIP2BQ9P265 1576 aa18.82■□□□□ 0.6
CPSF6-201ENST00000266679 KIAA0556O60303 1618 aa18.81■□□□□ 0.6
CPSF6-201ENST00000266679 NPM1P06748 294 aaKnown RBP eCLIP18.81■□□□□ 0.6
CPSF6-201ENST00000266679 MTUS2Q5JR59 1369 aa18.8■□□□□ 0.6
CPSF6-201ENST00000266679 UGGT2Q9NYU1 1516 aa18.8■□□□□ 0.6
CPSF6-201ENST00000266679 YTHDC1Q96MU7 727 aaKnown RBP18.8■□□□□ 0.6
CPSF6-201ENST00000266679 FGD6Q6ZV73 1430 aa18.79■□□□□ 0.6
CPSF6-201ENST00000266679 TSPOAP1O95153 1857 aa18.79■□□□□ 0.6
CPSF6-201ENST00000266679 ABCC10Q5T3U5 1492 aa18.78■□□□□ 0.6
CPSF6-201ENST00000266679 FAM69CQ0P6D2 419 aa18.77■□□□□ 0.6
CPSF6-201ENST00000266679 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.76■□□□□ 0.595e-6■□□□□ 8.7
CPSF6-201ENST00000266679 SUPT6HQ7KZ85 1726 aaKnown RBP18.76■□□□□ 0.59
CPSF6-201ENST00000266679 EHBP1L1Q8N3D4 1523 aa18.75■□□□□ 0.59
CPSF6-201ENST00000266679 ABCC2Q92887 1545 aa18.74■□□□□ 0.59
CPSF6-201ENST00000266679 NCOA2Q15596 1464 aa18.73■□□□□ 0.59
CPSF6-201ENST00000266679 GTF3C3Q9Y5Q9 886 aa18.72■□□□□ 0.59
CPSF6-201ENST00000266679 HECW1Q76N89 1606 aa18.71■□□□□ 0.59
CPSF6-201ENST00000266679 UACAQ9BZF9 1416 aa18.71■□□□□ 0.59
CPSF6-201ENST00000266679 MAGI3Q5TCQ9 1506 aa18.69■□□□□ 0.58
CPSF6-201ENST00000266679 ZCCHC11Q5TAX3 1644 aaKnown RBP18.69■□□□□ 0.58
CPSF6-201ENST00000266679 MYOM3Q5VTT5 1437 aa18.69■□□□□ 0.58
CPSF6-201ENST00000266679 CCDC18Q5T9S5 1454 aa18.68■□□□□ 0.58
CPSF6-201ENST00000266679 UHRF1BP1LA0JNW5 1464 aa18.68■□□□□ 0.58
CPSF6-201ENST00000266679 ASXL2Q76L83 1435 aa18.68■□□□□ 0.58
CPSF6-201ENST00000266679 SIN3AQ96ST3 1273 aa18.66■□□□□ 0.58
CPSF6-201ENST00000266679 PTPN23Q9H3S7 1636 aa18.66■□□□□ 0.58
CPSF6-201ENST00000266679 PLB1Q6P1J6 1458 aa18.66■□□□□ 0.58
CPSF6-201ENST00000266679 PTPRKQ15262 1439 aa18.66■□□□□ 0.58
CPSF6-201ENST00000266679 KDM5BQ9UGL1 1544 aa18.63■□□□□ 0.57
CPSF6-201ENST00000266679 CDK13Q14004 1512 aaKnown RBP18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms