RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 IFT140Q96RY7 1462 aa16.88■□□□□ 0.29
VPS4A-201ENST00000254950 FMN1Q68DA7 1419 aa16.86■□□□□ 0.29
VPS4A-201ENST00000254950 CARMIL2Q6F5E8 1435 aa16.86■□□□□ 0.29
VPS4A-201ENST00000254950 PLEKHD1A6NEE1 506 aa16.86■□□□□ 0.29
VPS4A-201ENST00000254950 PRXQ9BXM0 1461 aa16.86■□□□□ 0.29
VPS4A-201ENST00000254950 ERICH3Q5RHP9 1530 aa16.86■□□□□ 0.29
VPS4A-201ENST00000254950 GRIN2BQ13224 1484 aa16.85■□□□□ 0.29
VPS4A-201ENST00000254950 ABCA10Q8WWZ4 1543 aa16.84■□□□□ 0.29
VPS4A-201ENST00000254950 BIVM-ERCC5R4GMW8 1640 aa16.84■□□□□ 0.29
VPS4A-201ENST00000254950 URB2Q14146 1524 aaKnown RBP16.83■□□□□ 0.29
VPS4A-201ENST00000254950 FHOD3Q2V2M9 1422 aa16.82■□□□□ 0.28
VPS4A-201ENST00000254950 JPH4Q96JJ6 628 aa16.8■□□□□ 0.28
VPS4A-201ENST00000254950 KANK4Q5T7N3 995 aaPredicted RBP16.76■□□□□ 0.27
VPS4A-201ENST00000254950 NEUROD1Q13562 356 aa16.74■□□□□ 0.27
VPS4A-201ENST00000254950 CHIC2Q9UKJ5 165 aa16.73■□□□□ 0.27
VPS4A-201ENST00000254950 KCNH8Q96L42 1107 aa16.72■□□□□ 0.27
VPS4A-201ENST00000254950 TSPY4P0CV99 314 aa16.71■□□□□ 0.26
VPS4A-201ENST00000254950 TSPY10P0CW01 314 aa16.71■□□□□ 0.26
VPS4A-201ENST00000254950 CCNB3Q8WWL7 1395 aa16.7■□□□□ 0.26
VPS4A-201ENST00000254950 CFDP1Q9UEE9 299 aaPredicted RBP16.7■□□□□ 0.26
VPS4A-201ENST00000254950 SNAPC4Q5SXM2 1469 aa16.66■□□□□ 0.26
VPS4A-201ENST00000254950 ARHGAP35Q9NRY4 1499 aa16.64■□□□□ 0.25
VPS4A-201ENST00000254950 PRDM2Q13029 1718 aa16.61■□□□□ 0.25
VPS4A-201ENST00000254950 ARAP1Q96P48 1450 aa16.61■□□□□ 0.25
VPS4A-201ENST00000254950 CUL7Q14999 1698 aa16.61■□□□□ 0.25
VPS4A-201ENST00000254950 RRP7BPQ9NSQ0 103 aa16.61■□□□□ 0.25
VPS4A-201ENST00000254950 PTPRGP23470 1445 aa16.6■□□□□ 0.25
VPS4A-201ENST00000254950 ZNF608Q9ULD9 1512 aaPredicted RBP16.59■□□□□ 0.25
VPS4A-201ENST00000254950 OSCARQ8IYS5 282 aa16.58■□□□□ 0.24
VPS4A-201ENST00000254950 KIF21AQ7Z4S6 1674 aa16.57■□□□□ 0.24
VPS4A-201ENST00000254950 EFCAB5A4FU69 1503 aa16.57■□□□□ 0.24
VPS4A-201ENST00000254950 MAGI1Q96QZ7 1491 aaPredicted RBP16.54■□□□□ 0.24
VPS4A-201ENST00000254950 ACIN1Q9UKV3 1341 aaKnown RBP16.53■□□□□ 0.24
VPS4A-201ENST00000254950 CCDC18Q5T9S5 1454 aa16.53■□□□□ 0.24
VPS4A-201ENST00000254950 CASKIN1Q8WXD9 1431 aa16.53■□□□□ 0.24
VPS4A-201ENST00000254950 KIAA0586Q9BVV6 1533 aa16.53■□□□□ 0.24
VPS4A-201ENST00000254950 SYNJ2O15056 1496 aa16.52■□□□□ 0.24
VPS4A-201ENST00000254950 TONSLQ96HA7 1378 aa16.49■□□□□ 0.23
VPS4A-201ENST00000254950 GRIN2AQ12879 1464 aa16.49■□□□□ 0.23
VPS4A-201ENST00000254950 POLR3GLQ9BT43 218 aa16.48■□□□□ 0.23
VPS4A-201ENST00000254950 ZNF326Q5BKZ1 582 aaKnown RBP16.48■□□□□ 0.23
VPS4A-201ENST00000254950 WDR62O43379 1518 aa16.48■□□□□ 0.23
VPS4A-201ENST00000254950 FYCO1Q9BQS8 1478 aa16.47■□□□□ 0.23
VPS4A-201ENST00000254950 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.47■□□□□ 0.239e-7■■■□□ 14.9
VPS4A-201ENST00000254950 CENPBP07199 599 aaPredicted RBP16.46■□□□□ 0.23
VPS4A-201ENST00000254950 PRG4Q92954 1404 aaPredicted RBP16.46■□□□□ 0.23
VPS4A-201ENST00000254950 DIEXFQ68CQ4 756 aaKnown RBP16.46■□□□□ 0.23
VPS4A-201ENST00000254950 IQGAP2Q13576 1575 aa16.46■□□□□ 0.23
VPS4A-201ENST00000254950 ZNF316A6NFI3 1004 aaPredicted RBP16.46■□□□□ 0.22
VPS4A-201ENST00000254950 SLC4A1APQ9BWU0 796 aaKnown RBP16.45■□□□□ 0.22
VPS4A-201ENST00000254950 LRRC9Q6ZRR7 1453 aa16.43■□□□□ 0.22
VPS4A-201ENST00000254950 SETD5Q9C0A6 1442 aa16.42■□□□□ 0.22
VPS4A-201ENST00000254950 EFCAB2Q5VUJ9 269 aa16.41■□□□□ 0.22
VPS4A-201ENST00000254950 CLSPNQ9HAW4 1339 aa16.41■□□□□ 0.22
VPS4A-201ENST00000254950 ESF1Q9H501 851 aaKnown RBP16.36■□□□□ 0.21
VPS4A-201ENST00000254950 PHLDB1Q86UU1 1377 aa16.35■□□□□ 0.21
VPS4A-201ENST00000254950 YTHDC1Q96MU7 727 aaKnown RBP16.34■□□□□ 0.21
VPS4A-201ENST00000254950 RAB3GAP2Q9H2M9 1393 aa16.34■□□□□ 0.21
VPS4A-201ENST00000254950 MYOM3Q5VTT5 1437 aa16.33■□□□□ 0.2
VPS4A-201ENST00000254950 ADAMTS12P58397 1594 aa16.33■□□□□ 0.2
VPS4A-201ENST00000254950 TIAM1Q13009 1591 aa16.32■□□□□ 0.2
VPS4A-201ENST00000254950 ABCA5Q8WWZ7 1642 aa16.32■□□□□ 0.2
VPS4A-201ENST00000254950 RSPH4AQ5TD94 716 aa16.32■□□□□ 0.2
VPS4A-201ENST00000254950 FGD6Q6ZV73 1430 aa16.32■□□□□ 0.2
VPS4A-201ENST00000254950 EIF4G3O43432 1585 aaKnown RBP16.31■□□□□ 0.2
VPS4A-201ENST00000254950 CYB5RLQ6IPT4 315 aa16.31■□□□□ 0.2
VPS4A-201ENST00000254950 NCOA2Q15596 1464 aa16.31■□□□□ 0.2
VPS4A-201ENST00000254950 ANKRD30AQ9BXX3 1397 aa16.3■□□□□ 0.2
VPS4A-201ENST00000254950 HECW1Q76N89 1606 aa16.3■□□□□ 0.2
VPS4A-201ENST00000254950 TARBP1Q13395 1621 aaKnown RBP16.29■□□□□ 0.2
VPS4A-201ENST00000254950 HNRNPMP52272 730 aaKnown RBP eCLIP16.29■□□□□ 0.2
VPS4A-201ENST00000254950 PCF11O94913 1555 aaKnown RBP16.28■□□□□ 0.2
VPS4A-201ENST00000254950 CHGAP10645 457 aaKnown RBP16.28■□□□□ 0.2
VPS4A-201ENST00000254950 EHBP1L1Q8N3D4 1523 aa16.26■□□□□ 0.19
VPS4A-201ENST00000254950 SIN3AQ96ST3 1273 aa16.26■□□□□ 0.19
VPS4A-201ENST00000254950 WDR97A6NE52 1622 aa16.26■□□□□ 0.19
VPS4A-201ENST00000254950 EPRSP07814 1512 aaKnown RBP16.26■□□□□ 0.19
VPS4A-201ENST00000254950 RRBP1Q9P2E9 1410 aaKnown RBP16.25■□□□□ 0.19
VPS4A-201ENST00000254950 MAP3K1Q13233 1512 aa16.25■□□□□ 0.19
VPS4A-201ENST00000254950 TROQ12816 1431 aaPredicted RBP16.25■□□□□ 0.19
VPS4A-201ENST00000254950 CNGB1Q14028 1251 aaPredicted RBP16.24■□□□□ 0.19
VPS4A-201ENST00000254950 UACAQ9BZF9 1416 aa16.23■□□□□ 0.19
VPS4A-201ENST00000254950 CTTNBP2Q8WZ74 1663 aa16.22■□□□□ 0.19
VPS4A-201ENST00000254950 PBRM1Q86U86 1689 aa16.22■□□□□ 0.19
VPS4A-201ENST00000254950 PLB1Q6P1J6 1458 aa16.21■□□□□ 0.19
VPS4A-201ENST00000254950 KDM2AQ9Y2K7 1162 aa16.21■□□□□ 0.19
VPS4A-201ENST00000254950 CDK13Q14004 1512 aaKnown RBP16.21■□□□□ 0.19
VPS4A-201ENST00000254950 STAG3Q9UJ98 1225 aa16.21■□□□□ 0.18
VPS4A-201ENST00000254950 SPAG9O60271 1321 aaKnown RBP16.2■□□□□ 0.18
VPS4A-201ENST00000254950 TIMELESSQ9UNS1 1208 aa16.2■□□□□ 0.18
VPS4A-201ENST00000254950 ZNF644Q9H582 1327 aaPredicted RBP16.2■□□□□ 0.18
VPS4A-201ENST00000254950 UGGT2Q9NYU1 1516 aa16.19■□□□□ 0.18
VPS4A-201ENST00000254950 MPHOSPH9Q99550 1183 aa16.18■□□□□ 0.18
VPS4A-201ENST00000254950 ANP32CO43423 234 aa16.18■□□□□ 0.18
VPS4A-201ENST00000254950 NUP160Q12769 1436 aa16.17■□□□□ 0.18
VPS4A-201ENST00000254950 MIA2Q96PC5 1412 aa16.17■□□□□ 0.18
VPS4A-201ENST00000254950 THOC2Q8NI27 1593 aaKnown RBP16.17■□□□□ 0.18
VPS4A-201ENST00000254950 NUP155O75694 1391 aa16.16■□□□□ 0.18
VPS4A-201ENST00000254950 KANK1Q14678 1352 aa16.16■□□□□ 0.18
VPS4A-201ENST00000254950 PKD2Q13563 968 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 894.2 ms