RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 NISCHQ9Y2I1 1504 aa23.69■■□□□ 1.38
VPS4A-201ENST00000254950 DCAF8L2P0C7V8 631 aa21.4■■□□□ 1.02
VPS4A-201ENST00000254950 SHROOM4Q9ULL8 1493 aa20.51■□□□□ 0.87
VPS4A-201ENST00000254950 CCDC180Q9P1Z9 1646 aa20.19■□□□□ 0.82
VPS4A-201ENST00000254950 SUPT5HO00267 1087 aaKnown RBP20.16■□□□□ 0.82
VPS4A-201ENST00000254950 ABCC9O60706 1549 aa19.99■□□□□ 0.79
VPS4A-201ENST00000254950 ZCCHC6Q5VYS8 1495 aaKnown RBP19.76■□□□□ 0.75
VPS4A-201ENST00000254950 DCAF1Q9Y4B6 1507 aa19.25■□□□□ 0.67
VPS4A-201ENST00000254950 PABPN1Q86U42 306 aaKnown RBP eCLIP19.23■□□□□ 0.67
VPS4A-201ENST00000254950 NACADO15069 1562 aa19.2■□□□□ 0.66
VPS4A-201ENST00000254950 SCRIBQ14160 1630 aa19.19■□□□□ 0.66
VPS4A-201ENST00000254950 RB1CC1Q8TDY2 1594 aa19.17■□□□□ 0.66
VPS4A-201ENST00000254950 MYO15BQ96JP2 1530 aa18.94■□□□□ 0.62
VPS4A-201ENST00000254950 TRIM41Q8WV44 630 aa18.88■□□□□ 0.61
VPS4A-201ENST00000254950 FAM9AQ8IZU1 332 aaPredicted RBP18.77■□□□□ 0.6
VPS4A-201ENST00000254950 EHMT2Q96KQ7 1210 aa18.75■□□□□ 0.59
VPS4A-201ENST00000254950 CHIC1Q5VXU3 224 aa18.69■□□□□ 0.58
VPS4A-201ENST00000254950 RSF1Q96T23 1441 aaPredicted RBP18.58■□□□□ 0.56
VPS4A-201ENST00000254950 CECR2Q9BXF3 1484 aa18.48■□□□□ 0.55
VPS4A-201ENST00000254950 BAZ1AQ9NRL2 1556 aaPredicted RBP18.45■□□□□ 0.54
VPS4A-201ENST00000254950 UBTFP17480 764 aaKnown RBP18.33■□□□□ 0.52
VPS4A-201ENST00000254950 MROH2BQ7Z745 1585 aa18.3■□□□□ 0.52
VPS4A-201ENST00000254950 APLP2Q06481 763 aa18.26■□□□□ 0.51
VPS4A-201ENST00000254950 BAZ1BQ9UIG0 1483 aaKnown RBP18.24■□□□□ 0.51
VPS4A-201ENST00000254950 LOC105371045A0A1W2PR82 267 aa18.2■□□□□ 0.5
VPS4A-201ENST00000254950 RANGAP1P46060 587 aaPredicted RBP18.2■□□□□ 0.5
VPS4A-201ENST00000254950 SMARCA2P51531 1590 aa18.08■□□□□ 0.49
VPS4A-201ENST00000254950 SMARCA4P51532 1647 aa18.07■□□□□ 0.48
VPS4A-201ENST00000254950 WIZO95785 1651 aa18.05■□□□□ 0.48
VPS4A-201ENST00000254950 TTBK1Q5TCY1 1321 aaPredicted RBP17.99■□□□□ 0.47
VPS4A-201ENST00000254950 ATAD2BQ9ULI0 1458 aa17.99■□□□□ 0.47
VPS4A-201ENST00000254950 TOP2AP11388 1531 aaKnown RBP17.98■□□□□ 0.47
VPS4A-201ENST00000254950 CCDC88BA6NC98 1476 aa17.95■□□□□ 0.46
VPS4A-201ENST00000254950 PCGF6Q9BYE7 350 aa17.94■□□□□ 0.46
VPS4A-201ENST00000254950 CSRNP3Q8WYN3 585 aa17.94■□□□□ 0.46
VPS4A-201ENST00000254950 ATP1B4Q9UN42 357 aaPredicted RBP17.91■□□□□ 0.46
VPS4A-201ENST00000254950 BICRAQ9NZM4 1560 aa17.91■□□□□ 0.46
VPS4A-201ENST00000254950 WRNQ14191 1432 aaPredicted RBP eCLIP17.86■□□□□ 0.45
VPS4A-201ENST00000254950 EIF4G1Q04637 1599 aaKnown RBP17.82■□□□□ 0.44
VPS4A-201ENST00000254950 PPARGC1BQ86YN6 1023 aaKnown RBP17.77■□□□□ 0.44
VPS4A-201ENST00000254950 UNC13AQ9UPW8 1703 aa17.77■□□□□ 0.43
VPS4A-201ENST00000254950 NCAPD3P42695 1498 aa17.75■□□□□ 0.43
VPS4A-201ENST00000254950 EEA1Q15075 1411 aa17.71■□□□□ 0.42
VPS4A-201ENST00000254950 TRIM26Q12899 539 aaPredicted RBP17.7■□□□□ 0.42
VPS4A-201ENST00000254950 CADPSQ9ULU8 1353 aa17.67■□□□□ 0.42
VPS4A-201ENST00000254950 ABCC8Q09428 1581 aa17.62■□□□□ 0.41
VPS4A-201ENST00000254950 FBLN2P98095 1184 aa17.6■□□□□ 0.41
VPS4A-201ENST00000254950 PDS5BQ9NTI5 1447 aa17.58■□□□□ 0.4
VPS4A-201ENST00000254950 KIF27Q86VH2 1401 aa17.57■□□□□ 0.4
VPS4A-201ENST00000254950 HMGXB3Q12766 1538 aa17.55■□□□□ 0.4
VPS4A-201ENST00000254950 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.53■□□□□ 0.4
VPS4A-201ENST00000254950 HNRNPUL2Q1KMD3 747 aaKnown RBP17.53■□□□□ 0.4
VPS4A-201ENST00000254950 ERCC6Q03468 1493 aa17.53■□□□□ 0.4
VPS4A-201ENST00000254950 CC2D2AQ9P2K1 1620 aa17.53■□□□□ 0.4
VPS4A-201ENST00000254950 SOGA1O94964 1423 aa17.49■□□□□ 0.39
VPS4A-201ENST00000254950 GOLGA3Q08378 1498 aa17.49■□□□□ 0.39
VPS4A-201ENST00000254950 CCER1Q8TC90 406 aaPredicted RBP17.48■□□□□ 0.39
VPS4A-201ENST00000254950 PEG3Q9GZU2 1588 aa17.47■□□□□ 0.39
VPS4A-201ENST00000254950 P3H3Q8IVL6 736 aa17.45■□□□□ 0.38
VPS4A-201ENST00000254950 CEP164Q9UPV0 1460 aa17.45■□□□□ 0.38
VPS4A-201ENST00000254950 ZEB1P37275 1124 aaPredicted RBP17.43■□□□□ 0.38
VPS4A-201ENST00000254950 CUX2O14529 1486 aa17.43■□□□□ 0.38
VPS4A-201ENST00000254950 FANCD2Q9BXW9 1451 aa17.42■□□□□ 0.38
VPS4A-201ENST00000254950 TNIKQ9UKE5 1360 aa17.39■□□□□ 0.37
VPS4A-201ENST00000254950 CFTRP13569 1480 aa17.38■□□□□ 0.37
VPS4A-201ENST00000254950 CLIP1P30622 1438 aa17.38■□□□□ 0.37
VPS4A-201ENST00000254950 ITGAEP38570 1179 aa17.36■□□□□ 0.37
VPS4A-201ENST00000254950 CEP162Q5TB80 1403 aa17.35■□□□□ 0.37
VPS4A-201ENST00000254950 CHMP7Q8WUX9 453 aaPredicted RBP17.35■□□□□ 0.37
VPS4A-201ENST00000254950 CARMIL1Q5VZK9 1371 aa17.31■□□□□ 0.36
VPS4A-201ENST00000254950 TDRD9Q8NDG6 1382 aaKnown RBP17.26■□□□□ 0.35
VPS4A-201ENST00000254950 NESP48681 1621 aa17.23■□□□□ 0.35
VPS4A-201ENST00000254950 FAM50AQ14320 339 aaKnown RBP17.23■□□□□ 0.35
VPS4A-201ENST00000254950 DNAJC5BQ9UF47 199 aa17.21■□□□□ 0.35
VPS4A-201ENST00000254950 RUSC2Q8N2Y8 1516 aa17.2■□□□□ 0.34
VPS4A-201ENST00000254950 FGD5Q6ZNL6 1462 aa17.19■□□□□ 0.34
VPS4A-201ENST00000254950 ARID3CA6NKF2 412 aa17.18■□□□□ 0.34
VPS4A-201ENST00000254950 CDK11AQ9UQ88 783 aaPredicted RBP17.16■□□□□ 0.34
VPS4A-201ENST00000254950 HRCP23327 699 aa17.16■□□□□ 0.34
VPS4A-201ENST00000254950 SYNJ1O43426 1573 aa17.15■□□□□ 0.34
VPS4A-201ENST00000254950 RAPGEF2Q9Y4G8 1499 aa17.1■□□□□ 0.33
VPS4A-201ENST00000254950 LAMC3Q9Y6N6 1575 aa17.09■□□□□ 0.33
VPS4A-201ENST00000254950 TOP2BQ02880 1626 aa17.09■□□□□ 0.33
VPS4A-201ENST00000254950 RAD54L2Q9Y4B4 1467 aa17.08■□□□□ 0.33
VPS4A-201ENST00000254950 CUX1P39880 1505 aa17.08■□□□□ 0.33
VPS4A-201ENST00000254950 MYT1LQ9UL68 1186 aa17.06■□□□□ 0.32
VPS4A-201ENST00000254950 IGF1RP08069 1367 aa17.05■□□□□ 0.32
VPS4A-201ENST00000254950 TOPBP1Q92547 1522 aa17.05■□□□□ 0.32
VPS4A-201ENST00000254950 MTUS2Q5JR59 1369 aa17.03■□□□□ 0.32
VPS4A-201ENST00000254950 MRC2Q9UBG0 1479 aa17.02■□□□□ 0.32
VPS4A-201ENST00000254950 GAPVD1Q14C86 1478 aa17.01■□□□□ 0.31
VPS4A-201ENST00000254950 FHAD1B1AJZ9 1412 aa17.01■□□□□ 0.31
VPS4A-201ENST00000254950 VPS8Q8N3P4 1428 aa17■□□□□ 0.31
VPS4A-201ENST00000254950 DNMBPQ6XZF7 1577 aa16.99■□□□□ 0.31
VPS4A-201ENST00000254950 POLA1P09884 1462 aaPredicted RBP16.98■□□□□ 0.31
VPS4A-201ENST00000254950 NPM1P06748 294 aaKnown RBP eCLIP16.92■□□□□ 0.3
VPS4A-201ENST00000254950 ZNF777Q9ULD5 760 aaPredicted RBP16.92■□□□□ 0.3
VPS4A-201ENST00000254950 TRIM52Q96A61 297 aa16.9■□□□□ 0.3
VPS4A-201ENST00000254950 AQRO60306 1485 aaKnown RBP eCLIP16.9■□□□□ 0.33e-7■■■■■ 52.1
VPS4A-201ENST00000254950 KIF21BO75037 1637 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms