RNA–Protein interactions for RNA: ENST00000225441.11

RUNDC3A-201, Transcript of RUN domain containing 3A, humanhuman

TSL 1 (best) BASIC

Gene RUNDC3A, Length 1,821 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3A-201ENST00000225441 CLIP1P30622 1438 aa38.04■■■■□ 3.68
RUNDC3A-201ENST00000225441 SYNJ2O15056 1496 aa38.01■■■■□ 3.68
RUNDC3A-201ENST00000225441 CTTNBP2Q8WZ74 1663 aa38■■■■□ 3.67
RUNDC3A-201ENST00000225441 GRIN2AQ12879 1464 aa37.96■■■■□ 3.67
RUNDC3A-201ENST00000225441 RANGAP1P46060 587 aaPredicted RBP37.93■■■■□ 3.66
RUNDC3A-201ENST00000225441 CHMP7Q8WUX9 453 aaPredicted RBP37.89■■■■□ 3.66
RUNDC3A-201ENST00000225441 CCER1Q8TC90 406 aaPredicted RBP37.88■■■■□ 3.65
RUNDC3A-201ENST00000225441 FBLN2P98095 1184 aa37.81■■■■□ 3.64
RUNDC3A-201ENST00000225441 ARHGAP35Q9NRY4 1499 aa37.79■■■■□ 3.64
RUNDC3A-201ENST00000225441 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP37.78■■■■□ 3.64
RUNDC3A-201ENST00000225441 IQGAP2Q13576 1575 aa37.74■■■■□ 3.63
RUNDC3A-201ENST00000225441 CEP170Q5SW79 1584 aa37.73■■■■□ 3.63
RUNDC3A-201ENST00000225441 ARAP1Q96P48 1450 aa37.73■■■■□ 3.63
RUNDC3A-201ENST00000225441 KIAA0586Q9BVV6 1533 aa37.72■■■■□ 3.63
RUNDC3A-201ENST00000225441 NUP160Q12769 1436 aa37.71■■■■□ 3.63
RUNDC3A-201ENST00000225441 EFCAB5A4FU69 1503 aa37.69■■■■□ 3.62
RUNDC3A-201ENST00000225441 CHD1O14646 1710 aa37.69■■■■□ 3.62
RUNDC3A-201ENST00000225441 VPS8Q8N3P4 1428 aa37.68■■■■□ 3.62
RUNDC3A-201ENST00000225441 SAMD9Q5K651 1589 aa37.6■■■■□ 3.61
RUNDC3A-201ENST00000225441 UGGT2Q9NYU1 1516 aa37.56■■■■□ 3.6
RUNDC3A-201ENST00000225441 P3H3Q8IVL6 736 aa37.51■■■■□ 3.6
RUNDC3A-201ENST00000225441 FHOD3Q2V2M9 1422 aa37.51■■■■□ 3.59
RUNDC3A-201ENST00000225441 APLP2Q06481 763 aa37.38■■■■□ 3.58
RUNDC3A-201ENST00000225441 DISP1Q96F81 1524 aa37.38■■■■□ 3.57
RUNDC3A-201ENST00000225441 TTBK1Q5TCY1 1321 aaPredicted RBP37.37■■■■□ 3.57
RUNDC3A-201ENST00000225441 KIAA0556O60303 1618 aa37.37■■■■□ 3.57
RUNDC3A-201ENST00000225441 JPH4Q96JJ6 628 aa37.36■■■■□ 3.57
RUNDC3A-201ENST00000225441 FMN1Q68DA7 1419 aa37.33■■■■□ 3.57
RUNDC3A-201ENST00000225441 CLASP1Q7Z460 1538 aa37.29■■■■□ 3.56
RUNDC3A-201ENST00000225441 PCF11O94913 1555 aaKnown RBP37.26■■■■□ 3.56
RUNDC3A-201ENST00000225441 CARMIL2Q6F5E8 1435 aa37.25■■■■□ 3.55
RUNDC3A-201ENST00000225441 SHROOM2Q13796 1616 aa37.25■■■■□ 3.55
RUNDC3A-201ENST00000225441 CASKIN1Q8WXD9 1431 aa37.21■■■■□ 3.55
RUNDC3A-201ENST00000225441 FYCO1Q9BQS8 1478 aa37.21■■■■□ 3.55
RUNDC3A-201ENST00000225441 PRG4Q92954 1404 aaPredicted RBP37.18■■■■□ 3.54
RUNDC3A-201ENST00000225441 DIEXFQ68CQ4 756 aaKnown RBP37.15■■■■□ 3.54
RUNDC3A-201ENST00000225441 MAP3K1Q13233 1512 aa37.08■■■■□ 3.53
RUNDC3A-201ENST00000225441 OSCARQ8IYS5 282 aa37.06■■■■□ 3.52
RUNDC3A-201ENST00000225441 TIAM1Q13009 1591 aa37.05■■■■□ 3.52
RUNDC3A-201ENST00000225441 ATP1B4Q9UN42 357 aaPredicted RBP37.05■■■■□ 3.52
RUNDC3A-201ENST00000225441 ZNF316A6NFI3 1004 aaPredicted RBP37.04■■■■□ 3.52
RUNDC3A-201ENST00000225441 CFAP43Q8NDM7 1665 aa37.01■■■■□ 3.51
RUNDC3A-201ENST00000225441 CLSPNQ9HAW4 1339 aa37■■■■□ 3.51
RUNDC3A-201ENST00000225441 HECW1Q76N89 1606 aa37■■■■□ 3.51
RUNDC3A-201ENST00000225441 HNRNPUL2Q1KMD3 747 aaKnown RBP36.99■■■■□ 3.51
RUNDC3A-201ENST00000225441 ERCC6L2Q5T890 1561 aa36.98■■■■□ 3.51
RUNDC3A-201ENST00000225441 RAPGEF6Q8TEU7 1601 aa36.95■■■■□ 3.51
RUNDC3A-201ENST00000225441 KANK4Q5T7N3 995 aaPredicted RBP36.94■■■■□ 3.5
RUNDC3A-201ENST00000225441 LRRIQ1Q96JM4 1722 aa36.94■■■■□ 3.5
RUNDC3A-201ENST00000225441 SCAF1Q9H7N4 1312 aaKnown RBP36.92■■■■□ 3.5
RUNDC3A-201ENST00000225441 PTPRGP23470 1445 aa36.91■■■■□ 3.5
RUNDC3A-201ENST00000225441 PLB1Q6P1J6 1458 aa36.89■■■■□ 3.5
RUNDC3A-201ENST00000225441 CCDC18Q5T9S5 1454 aa36.89■■■■□ 3.5
RUNDC3A-201ENST00000225441 LRRC9Q6ZRR7 1453 aa36.87■■■■□ 3.49
RUNDC3A-201ENST00000225441 RRBP1Q9P2E9 1410 aaKnown RBP36.86■■■■□ 3.49
RUNDC3A-201ENST00000225441 ACIN1Q9UKV3 1341 aaKnown RBP36.86■■■■□ 3.49
RUNDC3A-201ENST00000225441 ABCA8O94911 1581 aa36.85■■■■□ 3.49
RUNDC3A-201ENST00000225441 EPRSP07814 1512 aaKnown RBP36.85■■■■□ 3.49
RUNDC3A-201ENST00000225441 NUP153P49790 1475 aaKnown RBP36.84■■■■□ 3.49
RUNDC3A-201ENST00000225441 CENPBP07199 599 aaPredicted RBP36.84■■■■□ 3.49
RUNDC3A-201ENST00000225441 CDK13Q14004 1512 aaKnown RBP36.78■■■■□ 3.48
RUNDC3A-201ENST00000225441 PELP1Q8IZL8 1130 aaKnown RBP36.73■■■■□ 3.47
RUNDC3A-201ENST00000225441 UACAQ9BZF9 1416 aa36.71■■■■□ 3.47
RUNDC3A-201ENST00000225441 ARID3CA6NKF2 412 aa36.7■■■■□ 3.47
RUNDC3A-201ENST00000225441 MTUS2Q5JR59 1369 aa36.69■■■■□ 3.46
RUNDC3A-201ENST00000225441 EHBP1L1Q8N3D4 1523 aa36.66■■■■□ 3.46
RUNDC3A-201ENST00000225441 MAGI3Q5TCQ9 1506 aa36.65■■■■□ 3.46
RUNDC3A-201ENST00000225441 ABCC2Q92887 1545 aa36.62■■■■□ 3.45
RUNDC3A-201ENST00000225441 DHX57Q6P158 1386 aaKnown RBP36.61■■■■□ 3.45
RUNDC3A-201ENST00000225441 NEUROD1Q13562 356 aa36.59■■■■□ 3.45
RUNDC3A-201ENST00000225441 CCNB3Q8WWL7 1395 aa36.58■■■■□ 3.45
RUNDC3A-201ENST00000225441 ATP10BO94823 1461 aa36.58■■■■□ 3.45
RUNDC3A-201ENST00000225441 UHRF1BP1LA0JNW5 1464 aa36.56■■■■□ 3.44
RUNDC3A-201ENST00000225441 CDK11AQ9UQ88 783 aaPredicted RBP36.54■■■■□ 3.44
RUNDC3A-201ENST00000225441 SUPT6HQ7KZ85 1726 aaKnown RBP36.53■■■■□ 3.44
RUNDC3A-201ENST00000225441 PHLDB1Q86UU1 1377 aa36.5■■■■□ 3.43
RUNDC3A-201ENST00000225441 ARHGEF11O15085 1522 aa36.48■■■■□ 3.43
RUNDC3A-201ENST00000225441 NCOA2Q15596 1464 aa36.48■■■■□ 3.43
RUNDC3A-201ENST00000225441 TROQ12816 1431 aaPredicted RBP36.46■■■■□ 3.43
RUNDC3A-201ENST00000225441 ADCY10Q96PN6 1610 aa36.41■■■■□ 3.42
RUNDC3A-201ENST00000225441 KDM5BQ9UGL1 1544 aa36.4■■■■□ 3.42
RUNDC3A-201ENST00000225441 DNAJC5Q9H3Z4 198 aa36.39■■■■□ 3.42
RUNDC3A-201ENST00000225441 PLEKHD1A6NEE1 506 aa36.38■■■■□ 3.41
RUNDC3A-201ENST00000225441 ZCCHC11Q5TAX3 1644 aaKnown RBP36.36■■■■□ 3.41
RUNDC3A-201ENST00000225441 RIMBP3CA6NJZ7 1639 aa36.32■■■■□ 3.4
RUNDC3A-201ENST00000225441 RIMBP3BA6NNM3 1639 aa36.32■■■■□ 3.4
RUNDC3A-201ENST00000225441 RIMBP3Q9UFD9 1639 aa36.32■■■■□ 3.4
RUNDC3A-201ENST00000225441 MYOM3Q5VTT5 1437 aa36.32■■■■□ 3.4
RUNDC3A-201ENST00000225441 KIF14Q15058 1648 aa36.29■■■■□ 3.4
RUNDC3A-201ENST00000225441 FGD6Q6ZV73 1430 aa36.28■■■■□ 3.4
RUNDC3A-201ENST00000225441 MIER1Q8N108 512 aa36.24■■■■□ 3.39
RUNDC3A-201ENST00000225441 GTF3C3Q9Y5Q9 886 aa36.23■■■■□ 3.39
RUNDC3A-201ENST00000225441 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP36.17■■■■□ 3.38
RUNDC3A-201ENST00000225441 ABCC10Q5T3U5 1492 aa36.17■■■■□ 3.38
RUNDC3A-201ENST00000225441 MIA2Q96PC5 1412 aa36.16■■■■□ 3.38
RUNDC3A-201ENST00000225441 SETD5Q9C0A6 1442 aa36.14■■■■□ 3.38
RUNDC3A-201ENST00000225441 FAM50AQ14320 339 aaKnown RBP36.13■■■■□ 3.37
RUNDC3A-201ENST00000225441 PTPN23Q9H3S7 1636 aa36.12■■■■□ 3.37
RUNDC3A-201ENST00000225441 RAB3GAP2Q9H2M9 1393 aa36.12■■■■□ 3.37
RUNDC3A-201ENST00000225441 ITSN2Q9NZM3 1697 aa36.11■■■■□ 3.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms