RNA–Protein interactions for RNA: ENST00000223084.7

LSM5-201, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM5, Length 1,295 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-201ENST00000223084 ERCC6L2Q5T890 1561 aa21.33■■□□□ 1.01
LSM5-201ENST00000223084 SHROOM2Q13796 1616 aa21.31■■□□□ 1
LSM5-201ENST00000223084 JPH4Q96JJ6 628 aa21.31■■□□□ 1
LSM5-201ENST00000223084 RAPGEF2Q9Y4G8 1499 aa21.31■■□□□ 1
LSM5-201ENST00000223084 KIAA0586Q9BVV6 1533 aa21.29■■□□□ 1
LSM5-201ENST00000223084 PRG4Q92954 1404 aaPredicted RBP21.27■■□□□ 1
LSM5-201ENST00000223084 FAM9AQ8IZU1 332 aaPredicted RBP21.25■□□□□ 0.99
LSM5-201ENST00000223084 CSRNP3Q8WYN3 585 aa21.24■□□□□ 0.99
LSM5-201ENST00000223084 PRXQ9BXM0 1461 aa21.23■□□□□ 0.99
LSM5-201ENST00000223084 EEA1Q15075 1411 aa21.2■□□□□ 0.98
LSM5-201ENST00000223084 IQGAP2Q13576 1575 aa21.16■□□□□ 0.98
LSM5-201ENST00000223084 CTTNBP2Q8WZ74 1663 aa21.09■□□□□ 0.97
LSM5-201ENST00000223084 TTBK1Q5TCY1 1321 aaPredicted RBP21.06■□□□□ 0.96
LSM5-201ENST00000223084 CARMIL2Q6F5E8 1435 aa21.05■□□□□ 0.96
LSM5-201ENST00000223084 UGGT2Q9NYU1 1516 aa21.04■□□□□ 0.96
LSM5-201ENST00000223084 DISP1Q96F81 1524 aa21.04■□□□□ 0.96
LSM5-201ENST00000223084 EHMT2Q96KQ7 1210 aa21.03■□□□□ 0.96
LSM5-201ENST00000223084 TNIKQ9UKE5 1360 aa21■□□□□ 0.95
LSM5-201ENST00000223084 PTPRGP23470 1445 aa21■□□□□ 0.95
LSM5-201ENST00000223084 KIF21BO75037 1637 aa21■□□□□ 0.95
LSM5-201ENST00000223084 KIAA0556O60303 1618 aa20.96■□□□□ 0.95
LSM5-201ENST00000223084 TRHP20396 242 aaPredicted RBP20.96■□□□□ 0.95
LSM5-201ENST00000223084 ADCY10Q96PN6 1610 aa20.93■□□□□ 0.94
LSM5-201ENST00000223084 RANGAP1P46060 587 aaPredicted RBP20.93■□□□□ 0.94
LSM5-201ENST00000223084 GOLGA3Q08378 1498 aa20.91■□□□□ 0.94
LSM5-201ENST00000223084 P3H3Q8IVL6 736 aa20.9■□□□□ 0.94
LSM5-201ENST00000223084 UBTFP17480 764 aaKnown RBP20.89■□□□□ 0.93
LSM5-201ENST00000223084 NPM1P06748 294 aaKnown RBP eCLIP20.86■□□□□ 0.93
LSM5-201ENST00000223084 UACAQ9BZF9 1416 aa20.85■□□□□ 0.93
LSM5-201ENST00000223084 SAMD9Q5K651 1589 aa20.81■□□□□ 0.92
LSM5-201ENST00000223084 UHRF1BP1LA0JNW5 1464 aa20.81■□□□□ 0.92
LSM5-201ENST00000223084 PLB1Q6P1J6 1458 aa20.8■□□□□ 0.92
LSM5-201ENST00000223084 ABCC2Q92887 1545 aa20.79■□□□□ 0.92
LSM5-201ENST00000223084 MAPKBP1O60336 1514 aa20.75■□□□□ 0.91
LSM5-201ENST00000223084 FHOD3Q2V2M9 1422 aa20.75■□□□□ 0.91
LSM5-201ENST00000223084 ABCA8O94911 1581 aa20.74■□□□□ 0.91
LSM5-201ENST00000223084 KDM5BQ9UGL1 1544 aa20.71■□□□□ 0.91
LSM5-201ENST00000223084 EFCAB5A4FU69 1503 aa20.7■□□□□ 0.9
LSM5-201ENST00000223084 KIF13AQ9H1H9 1805 aa20.7■□□□□ 0.9
LSM5-201ENST00000223084 FAM69CQ0P6D2 419 aa20.7■□□□□ 0.9
LSM5-201ENST00000223084 ZCCHC11Q5TAX3 1644 aaKnown RBP20.69■□□□□ 0.9
LSM5-201ENST00000223084 ARID3CA6NKF2 412 aa20.69■□□□□ 0.9
LSM5-201ENST00000223084 ASXL2Q76L83 1435 aa20.69■□□□□ 0.9
LSM5-201ENST00000223084 ABCC10Q5T3U5 1492 aa20.69■□□□□ 0.9
LSM5-201ENST00000223084 ARHGAP35Q9NRY4 1499 aa20.66■□□□□ 0.9
LSM5-201ENST00000223084 DIP2BQ9P265 1576 aa20.65■□□□□ 0.9
LSM5-201ENST00000223084 RAPGEF6Q8TEU7 1601 aa20.64■□□□□ 0.89
LSM5-201ENST00000223084 ATP10BO94823 1461 aa20.6■□□□□ 0.89
LSM5-201ENST00000223084 LOC105371045A0A1W2PR82 267 aa20.58■□□□□ 0.89
LSM5-201ENST00000223084 NUP153P49790 1475 aaKnown RBP20.57■□□□□ 0.88
LSM5-201ENST00000223084 EPRSP07814 1512 aaKnown RBP20.56■□□□□ 0.88
LSM5-201ENST00000223084 WDR7Q9Y4E6 1490 aa20.56■□□□□ 0.88
LSM5-201ENST00000223084 TSPOAP1O95153 1857 aa20.54■□□□□ 0.88
LSM5-201ENST00000223084 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.54■□□□□ 0.88
LSM5-201ENST00000223084 HNRNPUL2Q1KMD3 747 aaKnown RBP20.54■□□□□ 0.88
LSM5-201ENST00000223084 KCNH8Q96L42 1107 aa20.54■□□□□ 0.88
LSM5-201ENST00000223084 CLIP1P30622 1438 aa20.53■□□□□ 0.88
LSM5-201ENST00000223084 FMN1Q68DA7 1419 aa20.53■□□□□ 0.88
LSM5-201ENST00000223084 ATP1B4Q9UN42 357 aaPredicted RBP20.52■□□□□ 0.88
LSM5-201ENST00000223084 GLI2P10070 1586 aa20.51■□□□□ 0.87
LSM5-201ENST00000223084 CDK13Q14004 1512 aaKnown RBP20.45■□□□□ 0.86
LSM5-201ENST00000223084 CEP162Q5TB80 1403 aa20.44■□□□□ 0.86
LSM5-201ENST00000223084 MAP3K4Q9Y6R4 1608 aa20.44■□□□□ 0.86
LSM5-201ENST00000223084 PPRC1Q5VV67 1664 aaKnown RBP20.44■□□□□ 0.86
LSM5-201ENST00000223084 HECW1Q76N89 1606 aa20.43■□□□□ 0.86
LSM5-201ENST00000223084 PLEKHD1A6NEE1 506 aa20.42■□□□□ 0.86
LSM5-201ENST00000223084 PCF11O94913 1555 aaKnown RBP20.4■□□□□ 0.86
LSM5-201ENST00000223084 CD109Q6YHK3 1445 aa20.39■□□□□ 0.85
LSM5-201ENST00000223084 CASKIN1Q8WXD9 1431 aa20.38■□□□□ 0.85
LSM5-201ENST00000223084 LRRIQ1Q96JM4 1722 aa20.37■□□□□ 0.85
LSM5-201ENST00000223084 CFAP43Q8NDM7 1665 aa20.36■□□□□ 0.85
LSM5-201ENST00000223084 ABCA9Q8IUA7 1624 aa20.33■□□□□ 0.84
LSM5-201ENST00000223084 TEX14Q8IWB6 1497 aa20.32■□□□□ 0.84
LSM5-201ENST00000223084 KDM6BO15054 1643 aa20.32■□□□□ 0.84
LSM5-201ENST00000223084 MAGI3Q5TCQ9 1506 aa20.32■□□□□ 0.84
LSM5-201ENST00000223084 FYCO1Q9BQS8 1478 aa20.31■□□□□ 0.84
LSM5-201ENST00000223084 ILDR1Q86SU0 546 aaPredicted RBP20.31■□□□□ 0.84
LSM5-201ENST00000223084 CDK11AQ9UQ88 783 aaPredicted RBP20.3■□□□□ 0.84
LSM5-201ENST00000223084 COL17A1Q9UMD9 1497 aaPredicted RBP20.28■□□□□ 0.84
LSM5-201ENST00000223084 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.27■□□□□ 0.84
LSM5-201ENST00000223084 CCDC18Q5T9S5 1454 aa20.27■□□□□ 0.84
LSM5-201ENST00000223084 TROQ12816 1431 aaPredicted RBP20.26■□□□□ 0.83
LSM5-201ENST00000223084 TTC37Q6PGP7 1564 aa20.25■□□□□ 0.83
LSM5-201ENST00000223084 KIF14Q15058 1648 aa20.23■□□□□ 0.83
LSM5-201ENST00000223084 VPS8Q8N3P4 1428 aa20.18■□□□□ 0.82
LSM5-201ENST00000223084 NEO1Q92859 1461 aa20.16■□□□□ 0.82
LSM5-201ENST00000223084 ARAP3Q8WWN8 1544 aa20.14■□□□□ 0.81
LSM5-201ENST00000223084 FANCAO15360 1455 aa20.14■□□□□ 0.81
LSM5-201ENST00000223084 PLCH2O75038 1416 aa20.14■□□□□ 0.81
LSM5-201ENST00000223084 PHLDB1Q86UU1 1377 aa20.13■□□□□ 0.81
LSM5-201ENST00000223084 AKNAQ7Z591 1439 aa20.12■□□□□ 0.81
LSM5-201ENST00000223084 MYO5CQ9NQX4 1742 aa20.12■□□□□ 0.81
LSM5-201ENST00000223084 MTUS2Q5JR59 1369 aa20.11■□□□□ 0.81
LSM5-201ENST00000223084 RAPGEF3O95398 923 aa20.11■□□□□ 0.81
LSM5-201ENST00000223084 EFCAB2Q5VUJ9 269 aa20.08■□□□□ 0.81
LSM5-201ENST00000223084 CFAP74Q9C0B2 1584 aa20.08■□□□□ 0.8
LSM5-201ENST00000223084 ARHGAP5Q13017 1502 aa20.07■□□□□ 0.8
LSM5-201ENST00000223084 CDC42BPBQ9Y5S2 1711 aa20.05■□□□□ 0.8
LSM5-201ENST00000223084 TIAM1Q13009 1591 aa20.05■□□□□ 0.8
LSM5-201ENST00000223084 DENND4BO75064 1496 aaPredicted RBP20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms