RNA–Protein interactions for RNA: ENST00000223084.7

LSM5-201, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM5, Length 1,295 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-201ENST00000223084 NISCHQ9Y2I1 1504 aa30.76■■■□□ 2.51
LSM5-201ENST00000223084 CCDC180Q9P1Z9 1646 aa27.29■■□□□ 1.96
LSM5-201ENST00000223084 ABCC9O60706 1549 aa26.81■■□□□ 1.88
LSM5-201ENST00000223084 DCAF8L2P0C7V8 631 aa25.81■■□□□ 1.72
LSM5-201ENST00000223084 RB1CC1Q8TDY2 1594 aa25.71■■□□□ 1.71
LSM5-201ENST00000223084 NACADO15069 1562 aa25.68■■□□□ 1.7
LSM5-201ENST00000223084 ZCCHC6Q5VYS8 1495 aaKnown RBP25.62■■□□□ 1.69
LSM5-201ENST00000223084 MYO15BQ96JP2 1530 aa25.48■■□□□ 1.67
LSM5-201ENST00000223084 DCAF1Q9Y4B6 1507 aa25.39■■□□□ 1.66
LSM5-201ENST00000223084 UNC13AQ9UPW8 1703 aa25.17■■□□□ 1.62
LSM5-201ENST00000223084 PABPN1Q86U42 306 aaKnown RBP eCLIP25.11■■□□□ 1.61
LSM5-201ENST00000223084 SCRIBQ14160 1630 aa25■■□□□ 1.59
LSM5-201ENST00000223084 BICRAQ9NZM4 1560 aa24.97■■□□□ 1.59
LSM5-201ENST00000223084 DNAJC5BQ9UF47 199 aa24.78■■□□□ 1.56
LSM5-201ENST00000223084 SHROOM4Q9ULL8 1493 aa24.6■■□□□ 1.53
LSM5-201ENST00000223084 EIF4G1Q04637 1599 aaKnown RBP24.3■■□□□ 1.48
LSM5-201ENST00000223084 CC2D2AQ9P2K1 1620 aa24.22■■□□□ 1.47
LSM5-201ENST00000223084 CECR2Q9BXF3 1484 aa24.06■■□□□ 1.44
LSM5-201ENST00000223084 SMARCA4P51532 1647 aa23.87■■□□□ 1.41
LSM5-201ENST00000223084 BAZ1AQ9NRL2 1556 aaPredicted RBP23.82■■□□□ 1.4
LSM5-201ENST00000223084 ATAD2BQ9ULI0 1458 aa23.75■■□□□ 1.39
LSM5-201ENST00000223084 MROH2BQ7Z745 1585 aa23.74■■□□□ 1.39
LSM5-201ENST00000223084 NCAPD3P42695 1498 aa23.71■■□□□ 1.39
LSM5-201ENST00000223084 SMARCA2P51531 1590 aa23.68■■□□□ 1.38
LSM5-201ENST00000223084 PEG3Q9GZU2 1588 aa23.59■■□□□ 1.37
LSM5-201ENST00000223084 HMGXB3Q12766 1538 aa23.57■■□□□ 1.36
LSM5-201ENST00000223084 BAZ1BQ9UIG0 1483 aaKnown RBP23.55■■□□□ 1.36
LSM5-201ENST00000223084 DNAJC5Q9H3Z4 198 aa23.52■■□□□ 1.36
LSM5-201ENST00000223084 WIZO95785 1651 aa23.5■■□□□ 1.35
LSM5-201ENST00000223084 RSF1Q96T23 1441 aaPredicted RBP23.47■■□□□ 1.35
LSM5-201ENST00000223084 NESP48681 1621 aa23.22■■□□□ 1.31
LSM5-201ENST00000223084 TOP2AP11388 1531 aaKnown RBP23.2■■□□□ 1.3
LSM5-201ENST00000223084 AEBP2Q6ZN18 517 aaPredicted RBP23.15■■□□□ 1.3
LSM5-201ENST00000223084 ERCC6Q03468 1493 aa23.08■■□□□ 1.29
LSM5-201ENST00000223084 LAMC3Q9Y6N6 1575 aa23.06■■□□□ 1.28
LSM5-201ENST00000223084 CADPSQ9ULU8 1353 aa23.04■■□□□ 1.28
LSM5-201ENST00000223084 CCDC88BA6NC98 1476 aa22.97■■□□□ 1.27
LSM5-201ENST00000223084 SUPT5HO00267 1087 aaKnown RBP22.96■■□□□ 1.27
LSM5-201ENST00000223084 PDS5BQ9NTI5 1447 aa22.93■■□□□ 1.26
LSM5-201ENST00000223084 KIF21AQ7Z4S6 1674 aa22.9■■□□□ 1.26
LSM5-201ENST00000223084 CFTRP13569 1480 aa22.89■■□□□ 1.25
LSM5-201ENST00000223084 THOC2Q8NI27 1593 aaKnown RBP22.8■■□□□ 1.24
LSM5-201ENST00000223084 CUX2O14529 1486 aa22.79■■□□□ 1.24
LSM5-201ENST00000223084 FANCD2Q9BXW9 1451 aa22.79■■□□□ 1.24
LSM5-201ENST00000223084 CEP164Q9UPV0 1460 aa22.74■■□□□ 1.23
LSM5-201ENST00000223084 MRC2Q9UBG0 1479 aa22.71■■□□□ 1.23
LSM5-201ENST00000223084 PRDM2Q13029 1718 aa22.69■■□□□ 1.22
LSM5-201ENST00000223084 WDR62O43379 1518 aa22.62■■□□□ 1.21
LSM5-201ENST00000223084 URB2Q14146 1524 aaKnown RBP22.57■■□□□ 1.2
LSM5-201ENST00000223084 CHIC1Q5VXU3 224 aa22.54■■□□□ 1.2
LSM5-201ENST00000223084 TOPBP1Q92547 1522 aa22.42■■□□□ 1.18
LSM5-201ENST00000223084 DNMBPQ6XZF7 1577 aa22.37■■□□□ 1.17
LSM5-201ENST00000223084 ABCC8Q09428 1581 aa22.36■■□□□ 1.17
LSM5-201ENST00000223084 CUX1P39880 1505 aa22.27■■□□□ 1.16
LSM5-201ENST00000223084 IFT140Q96RY7 1462 aa22.26■■□□□ 1.15
LSM5-201ENST00000223084 POLA1P09884 1462 aaPredicted RBP22.23■■□□□ 1.15
LSM5-201ENST00000223084 ZNF608Q9ULD9 1512 aaPredicted RBP22.21■■□□□ 1.15
LSM5-201ENST00000223084 FGD5Q6ZNL6 1462 aa22.19■■□□□ 1.14
LSM5-201ENST00000223084 RAD54L2Q9Y4B4 1467 aa22.18■■□□□ 1.14
LSM5-201ENST00000223084 TRIM41Q8WV44 630 aa22.16■■□□□ 1.14
LSM5-201ENST00000223084 TARBP1Q13395 1621 aaKnown RBP22.16■■□□□ 1.14
LSM5-201ENST00000223084 SOGA1O94964 1423 aa22.15■■□□□ 1.14
LSM5-201ENST00000223084 WRNQ14191 1432 aaPredicted RBP eCLIP22.12■■□□□ 1.13
LSM5-201ENST00000223084 AQRO60306 1485 aaKnown RBP eCLIP22.09■■□□□ 1.138e-7■■■□□ 16.1
LSM5-201ENST00000223084 SYNJ1O43426 1573 aa22.08■■□□□ 1.12
LSM5-201ENST00000223084 EIF4G3O43432 1585 aaKnown RBP22.08■■□□□ 1.12
LSM5-201ENST00000223084 TDRD9Q8NDG6 1382 aaKnown RBP22.06■■□□□ 1.12
LSM5-201ENST00000223084 TOP2BQ02880 1626 aa22.04■■□□□ 1.12
LSM5-201ENST00000223084 BIVM-ERCC5R4GMW8 1640 aa22.03■■□□□ 1.12
LSM5-201ENST00000223084 WDR97A6NE52 1622 aa21.97■■□□□ 1.11
LSM5-201ENST00000223084 ABCA10Q8WWZ4 1543 aa21.95■■□□□ 1.1
LSM5-201ENST00000223084 OSCARQ8IYS5 282 aa21.9■■□□□ 1.1
LSM5-201ENST00000223084 GAPVD1Q14C86 1478 aa21.89■■□□□ 1.09
LSM5-201ENST00000223084 GRIN2BQ13224 1484 aa21.87■■□□□ 1.09
LSM5-201ENST00000223084 SNAPC4Q5SXM2 1469 aa21.86■■□□□ 1.09
LSM5-201ENST00000223084 ABCA5Q8WWZ7 1642 aa21.85■■□□□ 1.09
LSM5-201ENST00000223084 FBLN2P98095 1184 aa21.85■■□□□ 1.09
LSM5-201ENST00000223084 PBRM1Q86U86 1689 aa21.83■■□□□ 1.09
LSM5-201ENST00000223084 CHD1O14646 1710 aa21.82■■□□□ 1.08
LSM5-201ENST00000223084 MAGI1Q96QZ7 1491 aaPredicted RBP21.79■■□□□ 1.08
LSM5-201ENST00000223084 CHMP7Q8WUX9 453 aaPredicted RBP21.75■■□□□ 1.07
LSM5-201ENST00000223084 SYNJ2O15056 1496 aa21.71■■□□□ 1.07
LSM5-201ENST00000223084 ERICH3Q5RHP9 1530 aa21.67■■□□□ 1.06
LSM5-201ENST00000223084 ADAMTS12P58397 1594 aa21.65■■□□□ 1.06
LSM5-201ENST00000223084 KIF27Q86VH2 1401 aa21.63■■□□□ 1.05
LSM5-201ENST00000223084 FHAD1B1AJZ9 1412 aa21.63■■□□□ 1.05
LSM5-201ENST00000223084 GRIN2AQ12879 1464 aa21.59■■□□□ 1.05
LSM5-201ENST00000223084 IGF1RP08069 1367 aa21.59■■□□□ 1.05
LSM5-201ENST00000223084 CLASP1Q7Z460 1538 aa21.56■■□□□ 1.04
LSM5-201ENST00000223084 RIMBP3CA6NJZ7 1639 aa21.55■■□□□ 1.04
LSM5-201ENST00000223084 RIMBP3BA6NNM3 1639 aa21.55■■□□□ 1.04
LSM5-201ENST00000223084 RIMBP3Q9UFD9 1639 aa21.55■■□□□ 1.04
LSM5-201ENST00000223084 ARHGEF11O15085 1522 aa21.53■■□□□ 1.04
LSM5-201ENST00000223084 RUSC2Q8N2Y8 1516 aa21.52■■□□□ 1.04
LSM5-201ENST00000223084 CEP170Q5SW79 1584 aa21.5■■□□□ 1.03
LSM5-201ENST00000223084 NUP160Q12769 1436 aa21.49■■□□□ 1.03
LSM5-201ENST00000223084 CUL7Q14999 1698 aa21.47■■□□□ 1.03
LSM5-201ENST00000223084 CARMIL1Q5VZK9 1371 aa21.46■■□□□ 1.03
LSM5-201ENST00000223084 CYB5RLQ6IPT4 315 aa21.38■■□□□ 1.01
LSM5-201ENST00000223084 ARAP1Q96P48 1450 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 161.3 ms