RNA–Protein interactions for RNA: ENSMUST00000115537.1

Col28a1-201, Transcript of Collagen alpha-1(XXVIII) chain, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Col28a1, Length 4,230 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1-201ENSMUST00000115537 Gm13697A2AK42 830 aa12.33□□□□□ -0.44
Col28a1-201ENSMUST00000115537 NclP09405 707 aaKnown RBP12.32□□□□□ -0.44
Col28a1-201ENSMUST00000115537 Calr4Q3TQS0 420 aa12.32□□□□□ -0.44
Col28a1-201ENSMUST00000115537 Setd5Q5XJV7 1441 aa12.3□□□□□ -0.44
Col28a1-201ENSMUST00000115537 4933416C03RikQ3V063 378 aa12.3□□□□□ -0.44
Col28a1-201ENSMUST00000115537 Fmn1Q05860 1466 aa12.29□□□□□ -0.44
Col28a1-201ENSMUST00000115537 LrpprcQ6PB66 1392 aaKnown RBP12.29□□□□□ -0.44
Col28a1-201ENSMUST00000115537 Dhx29Q6PGC1 1365 aaKnown RBP12.29□□□□□ -0.44
Col28a1-201ENSMUST00000115537 Frmpd1A2AKB4 1549 aa12.28□□□□□ -0.44
Col28a1-201ENSMUST00000115537 AknaQ80VW7 1404 aa12.27□□□□□ -0.44
Col28a1-201ENSMUST00000115537 Eif5bQ05D44 1216 aaKnown RBP12.26□□□□□ -0.45
Col28a1-201ENSMUST00000115537 Cttnbp2B9EJA2 1648 aa12.26□□□□□ -0.45
Col28a1-201ENSMUST00000115537 Os9Q8K2C7 672 aa12.25□□□□□ -0.45
Col28a1-201ENSMUST00000115537 BlmO88700 1416 aa12.24□□□□□ -0.45
Col28a1-201ENSMUST00000115537 Arid3cA6PWV5 409 aa12.24□□□□□ -0.45
Col28a1-201ENSMUST00000115537 Ppp4r2Q0VGB7 417 aa12.23□□□□□ -0.45
Col28a1-201ENSMUST00000115537 Chic2Q9D9G3 165 aa12.22□□□□□ -0.45
Col28a1-201ENSMUST00000115537 Erich6D3Z6S9 713 aa12.2□□□□□ -0.46
Col28a1-201ENSMUST00000115537 Eid3Q3V124 375 aa12.2□□□□□ -0.46
Col28a1-201ENSMUST00000115537 Ppp1r18Q8BQ30 594 aa12.19□□□□□ -0.46
Col28a1-201ENSMUST00000115537 Pabpn1Q8CCS6 302 aaKnown RBP12.19□□□□□ -0.46
Col28a1-201ENSMUST00000115537 Hdac5Q9Z2V6 1113 aa12.18□□□□□ -0.46
Col28a1-201ENSMUST00000115537 Cc2d2aQ8CFW7 1633 aa12.18□□□□□ -0.46
Col28a1-201ENSMUST00000115537 Wdr43Q6ZQL4 677 aaKnown RBP12.17□□□□□ -0.46
Col28a1-201ENSMUST00000115537 Mrc2Q64449 1479 aa12.17□□□□□ -0.46
Col28a1-201ENSMUST00000115537 Ccdc9Q8VC31 543 aaKnown RBP12.16□□□□□ -0.46
Col28a1-201ENSMUST00000115537 Baz1bQ9Z277 1479 aa12.15□□□□□ -0.46
Col28a1-201ENSMUST00000115537 Nolc1E9Q5C9 702 aaKnown RBP12.15□□□□□ -0.46
Col28a1-201ENSMUST00000115537 Supt16hQ920B9 1047 aa12.15□□□□□ -0.46
Col28a1-201ENSMUST00000115537 Safb2Q80YR5 991 aaKnown RBP12.14□□□□□ -0.47
Col28a1-201ENSMUST00000115537 Ccdc27Q3V036 639 aa12.14□□□□□ -0.47
Col28a1-201ENSMUST00000115537 Rpap1Q80TE0 1409 aa12.12□□□□□ -0.47
Col28a1-201ENSMUST00000115537 DaxxO35613 739 aa12.12□□□□□ -0.47
Col28a1-201ENSMUST00000115537 Eea1Q8BL66 1411 aa12.12□□□□□ -0.47
Col28a1-201ENSMUST00000115537 Wdr62Q3U3T8 1523 aa12.1□□□□□ -0.47
Col28a1-201ENSMUST00000115537 Atp1b4Q99ME6 356 aa12.1□□□□□ -0.47
Col28a1-201ENSMUST00000115537 Urb2E9Q7L1 1524 aaKnown RBP12.1□□□□□ -0.47
Col28a1-201ENSMUST00000115537 Upf2A2AT37 1269 aaKnown RBP12.1□□□□□ -0.47
Col28a1-201ENSMUST00000115537 Hsp90aa1P07901 733 aaKnown RBP12.09□□□□□ -0.47
Col28a1-201ENSMUST00000115537 Irx3P81067 507 aa12.09□□□□□ -0.47
Col28a1-201ENSMUST00000115537 Gm13695A2AK44 830 aa12.08□□□□□ -0.48
Col28a1-201ENSMUST00000115537 Aebp1Q640N1 1128 aa12.07□□□□□ -0.48
Col28a1-201ENSMUST00000115537 Zbtb4Q5F293 982 aa12.07□□□□□ -0.48
Col28a1-201ENSMUST00000115537 Cep162Q6ZQ06 1403 aa12.06□□□□□ -0.48
Col28a1-201ENSMUST00000115537 Gtf3c3Q3TMP1 882 aa12.06□□□□□ -0.48
Col28a1-201ENSMUST00000115537 NrdcQ8BHG1 1161 aa12.05□□□□□ -0.48
Col28a1-201ENSMUST00000115537 Kif27Q7M6Z4 1394 aa12.04□□□□□ -0.48
Col28a1-201ENSMUST00000115537 Pknox2Q8BG99 474 aa12.02□□□□□ -0.49
Col28a1-201ENSMUST00000115537 Rad54l2Q99NG0 1466 aa12.01□□□□□ -0.49
Col28a1-201ENSMUST00000115537 MyclP10166 368 aa12□□□□□ -0.49
Col28a1-201ENSMUST00000115537 Rapgef2Q8CHG7 1496 aa12□□□□□ -0.49
Col28a1-201ENSMUST00000115537 Duox2A2AQ99 1517 aa11.98□□□□□ -0.49
Col28a1-201ENSMUST00000115537 Rrp7aQ9D1C9 280 aaKnown RBP11.98□□□□□ -0.49
Col28a1-201ENSMUST00000115537 Carmil1Q6EDY6 1374 aa11.98□□□□□ -0.49
Col28a1-201ENSMUST00000115537 Efcab5A0JP43 1406 aa11.97□□□□□ -0.49
Col28a1-201ENSMUST00000115537 Plb1Q3TTY0 1478 aa11.97□□□□□ -0.49
Col28a1-201ENSMUST00000115537 Znf710Q3U288 666 aa11.97□□□□□ -0.49
Col28a1-201ENSMUST00000115537 Soga1E1U8D0 1418 aa11.95□□□□□ -0.5
Col28a1-201ENSMUST00000115537 Plcd4Q8K3R3 807 aa11.95□□□□□ -0.5
Col28a1-201ENSMUST00000115537 PogzQ8BZH4 1409 aaKnown RBP11.94□□□□□ -0.5
Col28a1-201ENSMUST00000115537 Jph4Q80WT0 628 aa11.93□□□□□ -0.5
Col28a1-201ENSMUST00000115537 WrnO09053 1401 aa11.93□□□□□ -0.5
Col28a1-201ENSMUST00000115537 P3h3Q8CG70 732 aa11.92□□□□□ -0.5
Col28a1-201ENSMUST00000115537 MlecQ6ZQI3 291 aaKnown RBP11.91□□□□□ -0.5
Col28a1-201ENSMUST00000115537 4930567H17RikQ3V0K5 233 aa11.9□□□□□ -0.5
Col28a1-201ENSMUST00000115537 Clstn2Q9ER65 966 aa11.9□□□□□ -0.5
Col28a1-201ENSMUST00000115537 NeflP08551 543 aa11.89□□□□□ -0.51
Col28a1-201ENSMUST00000115537 Prdm10Q3UTQ7 1184 aa11.89□□□□□ -0.51
Col28a1-201ENSMUST00000115537 Lemd3Q9WU40 921 aa11.89□□□□□ -0.51
Col28a1-201ENSMUST00000115537 Fgd1P52734 960 aa11.87□□□□□ -0.51
Col28a1-201ENSMUST00000115537 Mtus2Q3UHD3 1353 aa11.86□□□□□ -0.51
Col28a1-201ENSMUST00000115537 Grin2bQ01097 1482 aa11.85□□□□□ -0.51
Col28a1-201ENSMUST00000115537 Fgd6Q69ZL1 1399 aa11.85□□□□□ -0.51
Col28a1-201ENSMUST00000115537 Mrs2Q5NCE8 434 aa11.85□□□□□ -0.51
Col28a1-201ENSMUST00000115537 Slc4a3P16283 1227 aa11.84□□□□□ -0.51
Col28a1-201ENSMUST00000115537 Shroom4Q1W617 1475 aa11.84□□□□□ -0.51
Col28a1-201ENSMUST00000115537 Ipo9Q91YE6 1041 aa11.84□□□□□ -0.51
Col28a1-201ENSMUST00000115537 PtprkP35822 1457 aa11.83□□□□□ -0.52
Col28a1-201ENSMUST00000115537 Ccer2J3QPU5 274 aa11.83□□□□□ -0.52
Col28a1-201ENSMUST00000115537 Pak3Q61036 559 aa11.82□□□□□ -0.52
Col28a1-201ENSMUST00000115537 Cabp1Q9JLK7 227 aa11.8□□□□□ -0.52
Col28a1-201ENSMUST00000115537 Ift140E9PY46 1464 aa11.8□□□□□ -0.52
Col28a1-201ENSMUST00000115537 Fam135aQ6NS59 1506 aa11.79□□□□□ -0.52
Col28a1-201ENSMUST00000115537 Rgl3Q3UYI5 709 aa11.79□□□□□ -0.52
Col28a1-201ENSMUST00000115537 CntlnA2AM05 1397 aa11.79□□□□□ -0.52
Col28a1-201ENSMUST00000115537 Sart1Q9Z315 806 aaKnown RBP11.78□□□□□ -0.52
Col28a1-201ENSMUST00000115537 Cc2d2bA0A286YDU8 1405 aa11.78□□□□□ -0.52
Col28a1-201ENSMUST00000115537 Fyco1Q8VDC1 1437 aa11.78□□□□□ -0.52
Col28a1-201ENSMUST00000115537 NrkQ9R0G8 1455 aa11.78□□□□□ -0.52
Col28a1-201ENSMUST00000115537 Thoc2B1AZI6 1594 aaKnown RBP11.78□□□□□ -0.52
Col28a1-201ENSMUST00000115537 Camsap1A2AHC3 1581 aa11.77□□□□□ -0.52
Col28a1-201ENSMUST00000115537 Anp32bQ9EST5 272 aaKnown RBP11.77□□□□□ -0.53
Col28a1-201ENSMUST00000115537 Lamc3Q9R0B6 1581 aa11.77□□□□□ -0.53
Col28a1-201ENSMUST00000115537 Stk24Q99KH8 431 aa11.76□□□□□ -0.53
Col28a1-201ENSMUST00000115537 Top2aQ01320 1528 aaKnown RBP11.76□□□□□ -0.53
Col28a1-201ENSMUST00000115537 Kdm2aP59997 1161 aa11.75□□□□□ -0.53
Col28a1-201ENSMUST00000115537 Tcerg1Q8CGF7 1100 aaKnown RBP11.75□□□□□ -0.53
Col28a1-201ENSMUST00000115537 Kif3bQ61771 747 aa11.74□□□□□ -0.53
Col28a1-201ENSMUST00000115537 Crocc2F6XLV1 1638 aa11.74□□□□□ -0.53
Col28a1-201ENSMUST00000115537 Ipo4Q8VI75 1082 aa11.74□□□□□ -0.53
Retrieved 100 of 22,080 RNA–protein pairs in 62.8 ms