RNA–Protein interactions for RNA: ENSMUST00000115537.1

Col28a1-201, Transcript of Collagen alpha-1(XXVIII) chain, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Col28a1, Length 4,230 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1-201ENSMUST00000115537 Rhox8Q6VSS7 320 aa15.83■□□□□ 0.12
Col28a1-201ENSMUST00000115537 NischQ80TM9 1593 aa15.34■□□□□ 0.05
Col28a1-201ENSMUST00000115537 Rpgrip1Q9EPQ2 1331 aa15.02■□□□□ -0
Col28a1-201ENSMUST00000115537 Abcc9P70170 1546 aa14.71□□□□□ -0.06
Col28a1-201ENSMUST00000115537 Ccdc136Q3TVA9 1136 aa14.42□□□□□ -0.1
Col28a1-201ENSMUST00000115537 Gm35339A0A140LHH9 1649 aa14.37□□□□□ -0.11
Col28a1-201ENSMUST00000115537 Abcc8B2RUS7 1588 aa14.35□□□□□ -0.11
Col28a1-201ENSMUST00000115537 Acin1Q9JIX8 1338 aaKnown RBP14.28□□□□□ -0.12
Col28a1-201ENSMUST00000115537 Ehmt2Q9Z148 1263 aaKnown RBP14.26□□□□□ -0.13
Col28a1-201ENSMUST00000115537 Esf1Q3V1V3 845 aaKnown RBP14.23□□□□□ -0.13
Col28a1-201ENSMUST00000115537 Pcgf6Q99NA9 353 aa14.16□□□□□ -0.14
Col28a1-201ENSMUST00000115537 Las1lA2BE28 776 aaKnown RBP14.09□□□□□ -0.15
Col28a1-201ENSMUST00000115537 Cngb1E1AZ71 1325 aa14.02□□□□□ -0.17
Col28a1-201ENSMUST00000115537 Trim41Q5NCC3 630 aa13.95□□□□□ -0.18
Col28a1-201ENSMUST00000115537 Zcchc6Q5BLK4 1491 aaKnown RBP13.88□□□□□ -0.19
Col28a1-201ENSMUST00000115537 Ccdc180J3QNE4 1664 aa13.82□□□□□ -0.2
Col28a1-201ENSMUST00000115537 Supt5hO55201 1082 aaKnown RBP13.72□□□□□ -0.21
Col28a1-201ENSMUST00000115537 Rtl1Q7M732 1744 aa13.71□□□□□ -0.21
Col28a1-201ENSMUST00000115537 Zeb1Q64318 1117 aa13.68□□□□□ -0.22
Col28a1-201ENSMUST00000115537 Gab3Q8BSM5 595 aa13.68□□□□□ -0.22
Col28a1-201ENSMUST00000115537 Il27Q8K3I6 234 aa13.65□□□□□ -0.22
Col28a1-201ENSMUST00000115537 Neurod1Q60867 357 aa13.63□□□□□ -0.23
Col28a1-201ENSMUST00000115537 CenpbP27790 599 aa13.62□□□□□ -0.23
Col28a1-201ENSMUST00000115537 Myt1Q8CFC2 1127 aa13.6□□□□□ -0.23
Col28a1-201ENSMUST00000115537 Npm2Q80W85 207 aa13.57□□□□□ -0.24
Col28a1-201ENSMUST00000115537 NacadQ5SWP3 1504 aa13.56□□□□□ -0.24
Col28a1-201ENSMUST00000115537 Myt1lP97500 1187 aa13.47□□□□□ -0.25
Col28a1-201ENSMUST00000115537 HrcG5E8J6 738 aa13.42□□□□□ -0.26
Col28a1-201ENSMUST00000115537 Rb1cc1Q9ESK9 1588 aa13.4□□□□□ -0.26
Col28a1-201ENSMUST00000115537 Kdm5dQ62240 1548 aa13.38□□□□□ -0.27
Col28a1-201ENSMUST00000115537 DiexfQ8BTT6 772 aaKnown RBP13.37□□□□□ -0.27
Col28a1-201ENSMUST00000115537 Wdr66E9Q743 1299 aa13.34□□□□□ -0.27
Col28a1-201ENSMUST00000115537 Dcaf1Q80TR8 1506 aa13.32□□□□□ -0.28
Col28a1-201ENSMUST00000115537 1700123L14RikQ3V2K7 440 aa13.31□□□□□ -0.28
Col28a1-201ENSMUST00000115537 NefmP08553 848 aa13.29□□□□□ -0.28
Col28a1-201ENSMUST00000115537 Csrnp3P59055 597 aa13.28□□□□□ -0.28
Col28a1-201ENSMUST00000115537 Npm1Q61937 292 aaKnown RBP13.28□□□□□ -0.28
Col28a1-201ENSMUST00000115537 Ubl4bQ9CQ84 188 aa13.27□□□□□ -0.29
Col28a1-201ENSMUST00000115537 ScribQ80U72 1612 aa13.24□□□□□ -0.29
Col28a1-201ENSMUST00000115537 Anks4bQ8K3X6 423 aa13.24□□□□□ -0.29
Col28a1-201ENSMUST00000115537 Cdk11bP24788 784 aaKnown RBP13.19□□□□□ -0.3
Col28a1-201ENSMUST00000115537 Sall2Q9QX96 1004 aa13.12□□□□□ -0.31
Col28a1-201ENSMUST00000115537 Aplp2Q06335 707 aa13.12□□□□□ -0.31
Col28a1-201ENSMUST00000115537 Brd4Q9ESU6 1400 aaKnown RBP13.11□□□□□ -0.31
Col28a1-201ENSMUST00000115537 Baz1aO88379 1555 aa13.11□□□□□ -0.31
Col28a1-201ENSMUST00000115537 Nop58Q6DFW4 536 aaKnown RBP13.1□□□□□ -0.31
Col28a1-201ENSMUST00000115537 Sycp2Q9CUU3 1500 aa13.08□□□□□ -0.32
Col28a1-201ENSMUST00000115537 Ube2uB1AUC4 352 aa13.06□□□□□ -0.32
Col28a1-201ENSMUST00000115537 Gm38655A0A286YDK6 273 aa13.02□□□□□ -0.32
Col28a1-201ENSMUST00000115537 Ap3b1Q9Z1T1 1105 aa12.96□□□□□ -0.33
Col28a1-201ENSMUST00000115537 Bcl11aQ9QYE3 773 aa12.96□□□□□ -0.34
Col28a1-201ENSMUST00000115537 Pds5bQ4VA53 1446 aaKnown RBP12.96□□□□□ -0.34
Col28a1-201ENSMUST00000115537 Mier1Q5UAK0 511 aa12.95□□□□□ -0.34
Col28a1-201ENSMUST00000115537 Pelp1Q9DBD5 1123 aaKnown RBP12.94□□□□□ -0.34
Col28a1-201ENSMUST00000115537 Ercc6F8VPZ5 1481 aa12.94□□□□□ -0.34
Col28a1-201ENSMUST00000115537 Ppargc1bQ8VHJ7 1014 aa12.92□□□□□ -0.34
Col28a1-201ENSMUST00000115537 Amer1Q7TS75 1132 aa12.92□□□□□ -0.34
Col28a1-201ENSMUST00000115537 Chic1Q8CBW7 227 aa12.88□□□□□ -0.35
Col28a1-201ENSMUST00000115537 Ifnlr1Q8CGK5 535 aa12.88□□□□□ -0.35
Col28a1-201ENSMUST00000115537 Kif15Q6P9L6 1387 aa12.86□□□□□ -0.35
Col28a1-201ENSMUST00000115537 UbtfP25976 765 aaKnown RBP12.86□□□□□ -0.35
Col28a1-201ENSMUST00000115537 ClspnQ80YR7 1315 aa12.81□□□□□ -0.36
Col28a1-201ENSMUST00000115537 Tnnt3Q9QZ47 272 aa12.79□□□□□ -0.36
Col28a1-201ENSMUST00000115537 Rsf1E9PWW9 1441 aaKnown RBP12.78□□□□□ -0.36
Col28a1-201ENSMUST00000115537 Fkbp15Q6P9Q6 1216 aaKnown RBP12.78□□□□□ -0.36
Col28a1-201ENSMUST00000115537 Cecr2E9Q2Z1 1453 aa12.76□□□□□ -0.37
Col28a1-201ENSMUST00000115537 Fam71e1A1L3C1 212 aa12.74□□□□□ -0.37
Col28a1-201ENSMUST00000115537 Atad2bE9Q166 1460 aaKnown RBP12.71□□□□□ -0.37
Col28a1-201ENSMUST00000115537 Lmod2Q3UHZ5 550 aa12.71□□□□□ -0.37
Col28a1-201ENSMUST00000115537 Crybg2B7ZCC2 1516 aa12.69□□□□□ -0.38
Col28a1-201ENSMUST00000115537 Aebp2Q9Z248 504 aaKnown RBP12.68□□□□□ -0.38
Col28a1-201ENSMUST00000115537 Rtl5Q5DTT4 599 aa12.67□□□□□ -0.38
Col28a1-201ENSMUST00000115537 Mapk8ip2Q9ERE9 830 aa12.67□□□□□ -0.38
Col28a1-201ENSMUST00000115537 Ttbk1Q6PCN3 1308 aa12.65□□□□□ -0.38
Col28a1-201ENSMUST00000115537 Fam50aQ9WV03 339 aaKnown RBP12.64□□□□□ -0.39
Col28a1-201ENSMUST00000115537 Dnajc5bQ9CQ94 199 aa12.64□□□□□ -0.39
Col28a1-201ENSMUST00000115537 Phldb1Q6PDH0 1371 aaKnown RBP12.63□□□□□ -0.39
Col28a1-201ENSMUST00000115537 Cep164Q5DU05 1446 aa12.63□□□□□ -0.39
Col28a1-201ENSMUST00000115537 Anp32aO35381 247 aa12.63□□□□□ -0.39
Col28a1-201ENSMUST00000115537 Golga3P55937 1487 aa12.63□□□□□ -0.39
Col28a1-201ENSMUST00000115537 Plppr3Q7TPB0 716 aa12.62□□□□□ -0.39
Col28a1-201ENSMUST00000115537 TonslQ6NZL6 1363 aa12.61□□□□□ -0.39
Col28a1-201ENSMUST00000115537 Stra8P70278 393 aa12.59□□□□□ -0.39
Col28a1-201ENSMUST00000115537 Plekhg3Q4VAC9 1341 aa12.58□□□□□ -0.4
Col28a1-201ENSMUST00000115537 CftrP26361 1476 aa12.58□□□□□ -0.4
Col28a1-201ENSMUST00000115537 Ccdc18Q640L5 1455 aa12.57□□□□□ -0.4
Col28a1-201ENSMUST00000115537 PrkcshO08795 521 aa12.55□□□□□ -0.4
Col28a1-201ENSMUST00000115537 Zbtb7cQ8VCZ7 619 aa12.55□□□□□ -0.4
Col28a1-201ENSMUST00000115537 Cux2P70298 1426 aa12.54□□□□□ -0.4
Col28a1-201ENSMUST00000115537 Smarca4Q3TKT4 1613 aaKnown RBP12.52□□□□□ -0.4
Col28a1-201ENSMUST00000115537 SafbD3YXK2 937 aaKnown RBP12.52□□□□□ -0.41
Col28a1-201ENSMUST00000115537 Smarca2Q6DIC0 1577 aa12.52□□□□□ -0.41
Col28a1-201ENSMUST00000115537 BicraF8VPZ9 1578 aa12.49□□□□□ -0.41
Col28a1-201ENSMUST00000115537 Hnrnpul2Q00PI9 745 aaKnown RBP12.47□□□□□ -0.41
Col28a1-201ENSMUST00000115537 Arhgap27A2AB59 869 aa12.45□□□□□ -0.42
Col28a1-201ENSMUST00000115537 Iqgap2Q3UQ44 1575 aa12.45□□□□□ -0.42
Col28a1-201ENSMUST00000115537 Synj1Q8CHC4 1574 aa12.43□□□□□ -0.42
Col28a1-201ENSMUST00000115537 Clip1Q922J3 1391 aa12.41□□□□□ -0.42
Col28a1-201ENSMUST00000115537 Slc24a1Q91WD8 1130 aa12.41□□□□□ -0.42
Col28a1-201ENSMUST00000115537 Ccdc88bQ4QRL3 1481 aa12.37□□□□□ -0.43
Retrieved 100 of 22,080 RNA–protein pairs in 119 ms