RNA–Protein interactions for RNA: ENSMUST00000109477.1

Ccdc88a-202, Transcript of Girdin, mousemouse

TSL 2 BASIC

Gene Ccdc88a, Length 1,716 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-202ENSMUST00000109477 Carmil1Q6EDY6 1374 aa33.27■■■□□ 2.92
Ccdc88a-202ENSMUST00000109477 Clip1Q922J3 1391 aa33.27■■■□□ 2.92
Ccdc88a-202ENSMUST00000109477 Shroom2A2ALU4 1481 aa33.25■■■□□ 2.91
Ccdc88a-202ENSMUST00000109477 Ehmt2Q9Z148 1263 aaKnown RBP33.22■■■□□ 2.91
Ccdc88a-202ENSMUST00000109477 EprsQ8CGC7 1512 aaKnown RBP33.18■■■□□ 2.9
Ccdc88a-202ENSMUST00000109477 Adamts12Q811B3 1600 aa33.09■■■□□ 2.89
Ccdc88a-202ENSMUST00000109477 Fgd6Q69ZL1 1399 aa33.09■■■□□ 2.89
Ccdc88a-202ENSMUST00000109477 WizO88286 1684 aaKnown RBP33.07■■■□□ 2.88
Ccdc88a-202ENSMUST00000109477 Pabpn1Q8CCS6 302 aaKnown RBP33.05■■■□□ 2.88
Ccdc88a-202ENSMUST00000109477 TchhA0A0B4J1F9 1599 aa33.04■■■□□ 2.88
Ccdc88a-202ENSMUST00000109477 Polr1aO35134 1717 aaKnown RBP33.04■■■□□ 2.88
Ccdc88a-202ENSMUST00000109477 Eea1Q8BL66 1411 aa33.03■■■□□ 2.88
Ccdc88a-202ENSMUST00000109477 Abca16E9PWJ7 1678 aa33.03■■■□□ 2.88
Ccdc88a-202ENSMUST00000109477 PxdnQ3UQ28 1475 aa33.03■■■□□ 2.88
Ccdc88a-202ENSMUST00000109477 Ankrd26Q811D2 1581 aa33■■■□□ 2.87
Ccdc88a-202ENSMUST00000109477 Erich3F6QRE9 1637 aa32.99■■■□□ 2.87
Ccdc88a-202ENSMUST00000109477 Abcc2Q8VI47 1543 aa32.97■■■□□ 2.87
Ccdc88a-202ENSMUST00000109477 CadpsQ80TJ1 1355 aa32.97■■■□□ 2.87
Ccdc88a-202ENSMUST00000109477 Cux1P53564 1515 aa32.94■■■□□ 2.86
Ccdc88a-202ENSMUST00000109477 Arhgap27A2AB59 869 aa32.94■■■□□ 2.86
Ccdc88a-202ENSMUST00000109477 Setd5Q5XJV7 1441 aa32.93■■■□□ 2.86
Ccdc88a-202ENSMUST00000109477 Rpap1Q80TE0 1409 aa32.93■■■□□ 2.86
Ccdc88a-202ENSMUST00000109477 Pelp1Q9DBD5 1123 aaKnown RBP32.93■■■□□ 2.86
Ccdc88a-202ENSMUST00000109477 Gm7298A0A0N4SVU1 1476 aa32.92■■■□□ 2.86
Ccdc88a-202ENSMUST00000109477 Arap1Q4LDD4 1452 aa32.87■■■□□ 2.85
Ccdc88a-202ENSMUST00000109477 Dnmt1P13864 1620 aaKnown RBP32.86■■■□□ 2.85
Ccdc88a-202ENSMUST00000109477 AknaQ80VW7 1404 aa32.85■■■□□ 2.85
Ccdc88a-202ENSMUST00000109477 Fyco1Q8VDC1 1437 aa32.85■■■□□ 2.85
Ccdc88a-202ENSMUST00000109477 Soga1E1U8D0 1418 aa32.84■■■□□ 2.85
Ccdc88a-202ENSMUST00000109477 Map3k4O08648 1597 aa32.84■■■□□ 2.85
Ccdc88a-202ENSMUST00000109477 Arhgef5E9Q7D5 1581 aa32.79■■■□□ 2.84
Ccdc88a-202ENSMUST00000109477 Abca5Q8K448 1642 aa32.78■■■□□ 2.84
Ccdc88a-202ENSMUST00000109477 Lmo7E9PYF4 1699 aaKnown RBP32.77■■■□□ 2.84
Ccdc88a-202ENSMUST00000109477 Abcc1O35379 1528 aa32.74■■■□□ 2.83
Ccdc88a-202ENSMUST00000109477 Neo1P97798 1493 aa32.74■■■□□ 2.83
Ccdc88a-202ENSMUST00000109477 BC005561E9Q5E2 1589 aa32.74■■■□□ 2.83
Ccdc88a-202ENSMUST00000109477 Pcf11G3X9Z4 1553 aa32.74■■■□□ 2.83
Ccdc88a-202ENSMUST00000109477 Slx4Q6P1D7 1565 aa32.71■■■□□ 2.83
Ccdc88a-202ENSMUST00000109477 Col17a1Q07563 1470 aa32.67■■■□□ 2.82
Ccdc88a-202ENSMUST00000109477 Ap3b1Q9Z1T1 1105 aa32.65■■■□□ 2.82
Ccdc88a-202ENSMUST00000109477 WrnO09053 1401 aa32.62■■■□□ 2.81
Ccdc88a-202ENSMUST00000109477 Tiam1Q60610 1591 aa32.62■■■□□ 2.81
Ccdc88a-202ENSMUST00000109477 Chd1P40201 1711 aa32.6■■■□□ 2.81
Ccdc88a-202ENSMUST00000109477 Dnajc5P60904 198 aa32.59■■■□□ 2.81
Ccdc88a-202ENSMUST00000109477 Gapvd1Q6PAR5 1458 aa32.58■■■□□ 2.81
Ccdc88a-202ENSMUST00000109477 Gm14025A2AP89 1413 aa32.58■■■□□ 2.81
Ccdc88a-202ENSMUST00000109477 Plekhg3Q4VAC9 1341 aa32.55■■■□□ 2.8
Ccdc88a-202ENSMUST00000109477 Jph4Q80WT0 628 aa32.54■■■□□ 2.8
Ccdc88a-202ENSMUST00000109477 Acin1Q9JIX8 1338 aaKnown RBP32.54■■■□□ 2.8
Ccdc88a-202ENSMUST00000109477 Aebp1Q640N1 1128 aa32.53■■■□□ 2.8
Ccdc88a-202ENSMUST00000109477 CntlnA2AM05 1397 aa32.52■■■□□ 2.8
Ccdc88a-202ENSMUST00000109477 Ythdc2B2RR83 1445 aaKnown RBP32.52■■■□□ 2.8
Ccdc88a-202ENSMUST00000109477 Zcchc11B2RX14 1644 aaKnown RBP32.51■■■□□ 2.8
Ccdc88a-202ENSMUST00000109477 Arhgef12Q8R4H2 1543 aaKnown RBP32.5■■■□□ 2.79
Ccdc88a-202ENSMUST00000109477 Peg3Q3URU2 1571 aa32.5■■■□□ 2.79
Ccdc88a-202ENSMUST00000109477 BlmO88700 1416 aa32.49■■■□□ 2.79
Ccdc88a-202ENSMUST00000109477 Naip1Q9QWK5 1403 aa32.49■■■□□ 2.79
Ccdc88a-202ENSMUST00000109477 Cep170Q6A065 1588 aa32.49■■■□□ 2.79
Ccdc88a-202ENSMUST00000109477 PtprtQ99M80 1454 aa32.42■■■□□ 2.78
Ccdc88a-202ENSMUST00000109477 UbtfP25976 765 aaKnown RBP32.39■■■□□ 2.78
Ccdc88a-202ENSMUST00000109477 Gm156Q58A37 223 aa32.37■■■□□ 2.77
Ccdc88a-202ENSMUST00000109477 Adgrl3Q80TS3 1537 aa32.36■■■□□ 2.77
Ccdc88a-202ENSMUST00000109477 Rrbp1Q99PL5 1605 aaKnown RBP32.34■■■□□ 2.77
Ccdc88a-202ENSMUST00000109477 Kif27Q7M6Z4 1394 aa32.32■■■□□ 2.76
Ccdc88a-202ENSMUST00000109477 Arhgap31A6X8Z5 1425 aa32.31■■■□□ 2.76
Ccdc88a-202ENSMUST00000109477 Rpgrip1Q9EPQ2 1331 aa32.3■■■□□ 2.76
Ccdc88a-202ENSMUST00000109477 Fkbp15Q6P9Q6 1216 aaKnown RBP32.27■■■□□ 2.76
Ccdc88a-202ENSMUST00000109477 Gm1043A0A140LJC2 1431 aa32.23■■■□□ 2.75
Ccdc88a-202ENSMUST00000109477 Rapgef6Q5NCJ1 1609 aa32.23■■■□□ 2.75
Ccdc88a-202ENSMUST00000109477 Ccdc141E9Q8Q6 1531 aa32.22■■■□□ 2.75
Ccdc88a-202ENSMUST00000109477 Kdm5bQ80Y84 1544 aa32.2■■■□□ 2.75
Ccdc88a-202ENSMUST00000109477 AI481877A2ALV5 1481 aa32.18■■■□□ 2.74
Ccdc88a-202ENSMUST00000109477 Lmod2Q3UHZ5 550 aa32.17■■■□□ 2.74
Ccdc88a-202ENSMUST00000109477 Ncoa2Q61026 1462 aa32.14■■■□□ 2.74
Ccdc88a-202ENSMUST00000109477 Mier1Q5UAK0 511 aa32.11■■■□□ 2.73
Ccdc88a-202ENSMUST00000109477 Igf1rQ60751 1373 aa32.1■■■□□ 2.73
Ccdc88a-202ENSMUST00000109477 Mroh2aD3Z750 1679 aa32.09■■■□□ 2.73
Ccdc88a-202ENSMUST00000109477 Arhgef11Q68FM7 1552 aa32.05■■■□□ 2.72
Ccdc88a-202ENSMUST00000109477 Ncapd3Q6ZQK0 1506 aa32.05■■■□□ 2.72
Ccdc88a-202ENSMUST00000109477 Setbp1Q9Z180 1582 aa32.04■■■□□ 2.72
Ccdc88a-202ENSMUST00000109477 Ncoa3O09000 1398 aa32.03■■■□□ 2.72
Ccdc88a-202ENSMUST00000109477 Magi1Q6RHR9 1471 aa32.02■■■□□ 2.72
Ccdc88a-202ENSMUST00000109477 Ifnlr1Q8CGK5 535 aa32.02■■■□□ 2.72
Ccdc88a-202ENSMUST00000109477 NhsB1AV60 1647 aa32.01■■■□□ 2.71
Ccdc88a-202ENSMUST00000109477 Cul7Q8VE73 1689 aa31.99■■■□□ 2.71
Ccdc88a-202ENSMUST00000109477 Pprc1Q6NZN1 1644 aa31.99■■■□□ 2.71
Ccdc88a-202ENSMUST00000109477 Mug1P28665 1476 aa31.98■■■□□ 2.71
Ccdc88a-202ENSMUST00000109477 Fancd2Q80V62 1450 aa31.97■■■□□ 2.71
Ccdc88a-202ENSMUST00000109477 Lmtk2Q3TYD6 1471 aa31.96■■■□□ 2.71
Ccdc88a-202ENSMUST00000109477 Gcc2Q8CHG3 1679 aa31.96■■■□□ 2.71
Ccdc88a-202ENSMUST00000109477 Lrrc9Q8CDN9 1456 aa31.95■■■□□ 2.7
Ccdc88a-202ENSMUST00000109477 Fam163aQ8CAA5 168 aa31.95■■■□□ 2.7
Ccdc88a-202ENSMUST00000109477 NexmifQ5DTT1 1515 aa31.94■■■□□ 2.7
Ccdc88a-202ENSMUST00000109477 Ttbk1Q6PCN3 1308 aa31.91■■■□□ 2.7
Ccdc88a-202ENSMUST00000109477 Wdr7Q920I9 1489 aa31.9■■■□□ 2.7
Ccdc88a-202ENSMUST00000109477 Znf608Q56A10 1511 aa31.9■■■□□ 2.7
Ccdc88a-202ENSMUST00000109477 Ak9G3UYQ4 1894 aa31.9■■■□□ 2.7
Ccdc88a-202ENSMUST00000109477 Dhx57Q6P5D3 1388 aaKnown RBP31.89■■■□□ 2.7
Ccdc88a-202ENSMUST00000109477 Kiaa1210E9Q0C6 1637 aa31.88■■■□□ 2.69
Ccdc88a-202ENSMUST00000109477 Atp10dQ8K2X1 1416 aa31.87■■■□□ 2.69
Retrieved 100 of 22,080 RNA–protein pairs in 16.3 ms