RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Brd4Q9ESU6 1400 aaKnown RBP15.75■□□□□ 0.11
Trim56-201ENSMUST00000054384 Fkbp15Q6P9Q6 1216 aaKnown RBP15.73■□□□□ 0.11
Trim56-201ENSMUST00000054384 PtmaP26350 111 aa15.73■□□□□ 0.11
Trim56-201ENSMUST00000054384 Znf326O88291 580 aa15.72■□□□□ 0.11
Trim56-201ENSMUST00000054384 CanxP35564 591 aaKnown RBP15.69■□□□□ 0.1
Trim56-201ENSMUST00000054384 Cep164Q5DU05 1446 aa15.69■□□□□ 0.1
Trim56-201ENSMUST00000054384 Trim30dE9PWL0 497 aa15.69■□□□□ 0.1
Trim56-201ENSMUST00000054384 Mrs2Q5NCE8 434 aa15.68■□□□□ 0.1
Trim56-201ENSMUST00000054384 Trim26Q99PN3 545 aa15.66■□□□□ 0.1
Trim56-201ENSMUST00000054384 Rb1cc1Q9ESK9 1588 aa15.61■□□□□ 0.09
Trim56-201ENSMUST00000054384 Htatsf1Q8BGC0 757 aa15.6■□□□□ 0.09
Trim56-201ENSMUST00000054384 Clstn2Q9ER65 966 aa15.6■□□□□ 0.09
Trim56-201ENSMUST00000054384 Arid4bA2CG63 1314 aaKnown RBP15.6■□□□□ 0.09
Trim56-201ENSMUST00000054384 Safb2Q80YR5 991 aaKnown RBP15.59■□□□□ 0.09
Trim56-201ENSMUST00000054384 Chic2Q9D9G3 165 aa15.59■□□□□ 0.09
Trim56-201ENSMUST00000054384 Adam1bQ8R534 806 aa15.58■□□□□ 0.08
Trim56-201ENSMUST00000054384 P3h3Q8CG70 732 aa15.57■□□□□ 0.08
Trim56-201ENSMUST00000054384 Plcb2A3KGF7 1181 aa15.56■□□□□ 0.08
Trim56-201ENSMUST00000054384 BlmO88700 1416 aa15.55■□□□□ 0.08
Trim56-201ENSMUST00000054384 PnnO35691 725 aaKnown RBP15.54■□□□□ 0.08
Trim56-201ENSMUST00000054384 Ccdc27Q3V036 639 aa15.5■□□□□ 0.07
Trim56-201ENSMUST00000054384 Irx6Q9ER75 438 aa15.49■□□□□ 0.07
Trim56-201ENSMUST00000054384 Ofd1Q80Z25 1017 aa15.47■□□□□ 0.07
Trim56-201ENSMUST00000054384 Fam71e1A1L3C1 212 aa15.46■□□□□ 0.07
Trim56-201ENSMUST00000054384 Map7O88735 730 aa15.44■□□□□ 0.06
Trim56-201ENSMUST00000054384 Rgl3Q3UYI5 709 aa15.44■□□□□ 0.06
Trim56-201ENSMUST00000054384 IqubQ8CDK3 788 aa15.43■□□□□ 0.06
Trim56-201ENSMUST00000054384 Ppm1gQ61074 542 aa15.42■□□□□ 0.06
Trim56-201ENSMUST00000054384 Casc1Q6TDU8 730 aa15.42■□□□□ 0.06
Trim56-201ENSMUST00000054384 Chmp4bQ9D8B3 224 aaKnown RBP15.4■□□□□ 0.06
Trim56-201ENSMUST00000054384 Abcc8B2RUS7 1588 aa15.39■□□□□ 0.05
Trim56-201ENSMUST00000054384 Clstn1Q9EPL2 979 aa15.39■□□□□ 0.05
Trim56-201ENSMUST00000054384 Apbb1Q9QXJ1 710 aa15.38■□□□□ 0.05
Trim56-201ENSMUST00000054384 Tnnt2P50752 301 aa15.38■□□□□ 0.05
Trim56-201ENSMUST00000054384 Pes1Q9EQ61 584 aaKnown RBP15.38■□□□□ 0.05
Trim56-201ENSMUST00000054384 Mapk8ip3Q9ESN9 1337 aa15.38■□□□□ 0.05
Trim56-201ENSMUST00000054384 Exosc9Q9JHI7 438 aaKnown RBP15.38■□□□□ 0.05
Trim56-201ENSMUST00000054384 Znf316Q6PGE4 1016 aa15.35■□□□□ 0.05
Trim56-201ENSMUST00000054384 Setd5Q5XJV7 1441 aa15.33■□□□□ 0.04
Trim56-201ENSMUST00000054384 Ubl4bQ9CQ84 188 aa15.33■□□□□ 0.04
Trim56-201ENSMUST00000054384 Srpk2O54781 681 aaKnown RBP15.32■□□□□ 0.04
Trim56-201ENSMUST00000054384 Kdm2aP59997 1161 aa15.31■□□□□ 0.04
Trim56-201ENSMUST00000054384 Rtn4Q99P72 1162 aaKnown RBP15.3■□□□□ 0.04
Trim56-201ENSMUST00000054384 Calcoco2A2A6M5 331 aa15.3■□□□□ 0.04
Trim56-201ENSMUST00000054384 Mak16Q8BGS0 296 aaKnown RBP15.3■□□□□ 0.04
Trim56-201ENSMUST00000054384 MccE9PWI3 1003 aa15.29■□□□□ 0.04
Trim56-201ENSMUST00000054384 Neurod2Q62414 383 aa15.29■□□□□ 0.04
Trim56-201ENSMUST00000054384 Card11Q8CIS0 1159 aa15.28■□□□□ 0.04
Trim56-201ENSMUST00000054384 Gm6268A2A3U9 297 aa15.28■□□□□ 0.04
Trim56-201ENSMUST00000054384 Erich6bQ9D4S6 220 aa15.28■□□□□ 0.04
Trim56-201ENSMUST00000054384 Iqcf3Q9D498 203 aa15.27■□□□□ 0.04
Trim56-201ENSMUST00000054384 Cwc22Q8C5N3 908 aaKnown RBP15.27■□□□□ 0.04
Trim56-201ENSMUST00000054384 Spryd3E9Q9B3 442 aa15.27■□□□□ 0.03
Trim56-201ENSMUST00000054384 Gm973E9Q295 1059 aa15.27■□□□□ 0.03
Trim56-201ENSMUST00000054384 1700123L14RikQ3V2K7 440 aa15.27■□□□□ 0.03
Trim56-201ENSMUST00000054384 KnstrnQ9D9Z1 312 aaKnown RBP15.26■□□□□ 0.03
Trim56-201ENSMUST00000054384 Hsp90b1P08113 802 aaKnown RBP15.26■□□□□ 0.03
Trim56-201ENSMUST00000054384 Armcx1Q9CX83 456 aa15.26■□□□□ 0.03
Trim56-201ENSMUST00000054384 Sh3bp5Q9Z131 463 aa15.26■□□□□ 0.03
Trim56-201ENSMUST00000054384 Irx3P81067 507 aa15.26■□□□□ 0.03
Trim56-201ENSMUST00000054384 Wwc2Q6NXJ0 1187 aa15.26■□□□□ 0.03
Trim56-201ENSMUST00000054384 Grwd1Q810D6 446 aaKnown RBP15.24■□□□□ 0.03
Trim56-201ENSMUST00000054384 Dbr1Q923B1 550 aa15.24■□□□□ 0.03
Trim56-201ENSMUST00000054384 NudcO35685 332 aaKnown RBP15.24■□□□□ 0.03
Trim56-201ENSMUST00000054384 Mroh3A0A1D5RM54 893 aa15.23■□□□□ 0.03
Trim56-201ENSMUST00000054384 Mbd3Q9Z2D8 285 aaKnown RBP15.23■□□□□ 0.03
Trim56-201ENSMUST00000054384 Zfp777B9EKF4 885 aa15.21■□□□□ 0.03
Trim56-201ENSMUST00000054384 AU015836B2RUM3 263 aa15.2■□□□□ 0.02
Trim56-201ENSMUST00000054384 Gm20521D3Z5F7 333 aa15.2■□□□□ 0.02
Trim56-201ENSMUST00000054384 1700019A02RikA0A087WPV9 146 aa15.2■□□□□ 0.02
Trim56-201ENSMUST00000054384 Dnttip2Q8R2M2 758 aaKnown RBP15.2■□□□□ 0.02
Trim56-201ENSMUST00000054384 B4galnt3Q6L8S8 986 aa15.2■□□□□ 0.02
Trim56-201ENSMUST00000054384 MsnP26041 577 aaKnown RBP15.19■□□□□ 0.02
Trim56-201ENSMUST00000054384 PtmsQ9D0J8 101 aaKnown RBP15.19■□□□□ 0.02
Trim56-201ENSMUST00000054384 Stag3O70576 1240 aa15.19■□□□□ 0.02
Trim56-201ENSMUST00000054384 Pcmtd1P59913 357 aa15.18■□□□□ 0.02
Trim56-201ENSMUST00000054384 Anapc15P60007 132 aa15.17■□□□□ 0.02
Trim56-201ENSMUST00000054384 NgefQ8CHT1 710 aa15.17■□□□□ 0.02
Trim56-201ENSMUST00000054384 Mtus2Q3UHD3 1353 aa15.17■□□□□ 0.02
Trim56-201ENSMUST00000054384 SetQ9EQU5 289 aaKnown RBP15.16■□□□□ 0.02
Trim56-201ENSMUST00000054384 Rassf8Q8CJ96 419 aa15.16■□□□□ 0.02
Trim56-201ENSMUST00000054384 Eea1Q8BL66 1411 aa15.16■□□□□ 0.02
Trim56-201ENSMUST00000054384 Bcl11aQ9QYE3 773 aa15.16■□□□□ 0.02
Trim56-201ENSMUST00000054384 Aebp2Q9Z248 504 aaKnown RBP15.14■□□□□ 0.01
Trim56-201ENSMUST00000054384 Ccdc18Q640L5 1455 aa15.14■□□□□ 0.01
Trim56-201ENSMUST00000054384 HnrnpuQ8VEK3 800 aaKnown RBP15.13■□□□□ 0.01
Trim56-201ENSMUST00000054384 Cald1E9QA15 768 aaKnown RBP15.13■□□□□ 0.01
Trim56-201ENSMUST00000054384 Rwdd1Q9CQK7 243 aa15.13■□□□□ 0.01
Trim56-201ENSMUST00000054384 Tpm3-rs7D3Z2H9 248 aa15.11■□□□□ 0.01
Trim56-201ENSMUST00000054384 Fhad1A6PWD2 1420 aa15.11■□□□□ 0.01
Trim56-201ENSMUST00000054384 Eif4g2Q62448 906 aaKnown RBP15.1■□□□□ 0.01
Trim56-201ENSMUST00000054384 Mia2Q91ZV0 1396 aa15.09■□□□□ 0.01
Trim56-201ENSMUST00000054384 RdxP26043 583 aaKnown RBP15.07■□□□□ 0
Trim56-201ENSMUST00000054384 Dnai1Q8C0M8 701 aa15.06■□□□□ 0
Trim56-201ENSMUST00000054384 Pde3bQ61409 1100 aa15.05■□□□□ -0
Trim56-201ENSMUST00000054384 Stk24Q99KH8 431 aa15.05■□□□□ -0
Trim56-201ENSMUST00000054384 Tcerg1Q8CGF7 1100 aaKnown RBP15.04■□□□□ -0
Trim56-201ENSMUST00000054384 Sart3Q9JLI8 962 aaKnown RBP15.04■□□□□ -0
Trim56-201ENSMUST00000054384 Rsf1E9PWW9 1441 aaKnown RBP15.03■□□□□ -0
Trim56-201ENSMUST00000054384 Dnai2A2AC93 623 aa15.03■□□□□ -0
Retrieved 100 of 22,080 RNA–protein pairs in 59.5 ms