RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Rhox8Q6VSS7 320 aa20.65■□□□□ 0.9
Trim56-201ENSMUST00000054384 Rpgrip1Q9EPQ2 1331 aa19.45■□□□□ 0.7
Trim56-201ENSMUST00000054384 Cngb1E1AZ71 1325 aa19.21■□□□□ 0.67
Trim56-201ENSMUST00000054384 Las1lA2BE28 776 aaKnown RBP19.05■□□□□ 0.64
Trim56-201ENSMUST00000054384 Pelp1Q9DBD5 1123 aaKnown RBP18.96■□□□□ 0.63
Trim56-201ENSMUST00000054384 Ehmt2Q9Z148 1263 aaKnown RBP18.82■□□□□ 0.6
Trim56-201ENSMUST00000054384 Wdr66E9Q743 1299 aa18.65■□□□□ 0.58
Trim56-201ENSMUST00000054384 Ube2uB1AUC4 352 aa18.46■□□□□ 0.55
Trim56-201ENSMUST00000054384 Zeb1Q64318 1117 aa18.36■□□□□ 0.53
Trim56-201ENSMUST00000054384 Amer1Q7TS75 1132 aa18.27■□□□□ 0.51
Trim56-201ENSMUST00000054384 Esf1Q3V1V3 845 aaKnown RBP18.26■□□□□ 0.51
Trim56-201ENSMUST00000054384 Ccdc136Q3TVA9 1136 aa18.15■□□□□ 0.5
Trim56-201ENSMUST00000054384 CenpbP27790 599 aa18.01■□□□□ 0.47
Trim56-201ENSMUST00000054384 Npm2Q80W85 207 aa18.01■□□□□ 0.47
Trim56-201ENSMUST00000054384 Gab3Q8BSM5 595 aa17.96■□□□□ 0.47
Trim56-201ENSMUST00000054384 Stra8P70278 393 aa17.86■□□□□ 0.45
Trim56-201ENSMUST00000054384 Rtl1Q7M732 1744 aa17.85■□□□□ 0.45
Trim56-201ENSMUST00000054384 Myt1lP97500 1187 aa17.81■□□□□ 0.44
Trim56-201ENSMUST00000054384 Trim41Q5NCC3 630 aa17.8■□□□□ 0.44
Trim56-201ENSMUST00000054384 4930567H17RikQ3V0K5 233 aa17.74■□□□□ 0.43
Trim56-201ENSMUST00000054384 Ccdc180J3QNE4 1664 aa17.66■□□□□ 0.42
Trim56-201ENSMUST00000054384 Slc24a1Q91WD8 1130 aa17.64■□□□□ 0.41
Trim56-201ENSMUST00000054384 NefmP08553 848 aa17.61■□□□□ 0.41
Trim56-201ENSMUST00000054384 Acin1Q9JIX8 1338 aaKnown RBP17.58■□□□□ 0.41
Trim56-201ENSMUST00000054384 Ttbk1Q6PCN3 1308 aa17.58■□□□□ 0.4
Trim56-201ENSMUST00000054384 UbtfP25976 765 aaKnown RBP17.49■□□□□ 0.39
Trim56-201ENSMUST00000054384 NischQ80TM9 1593 aa17.43■□□□□ 0.38
Trim56-201ENSMUST00000054384 4933416C03RikQ3V063 378 aa17.42■□□□□ 0.38
Trim56-201ENSMUST00000054384 Myt1Q8CFC2 1127 aa17.33■□□□□ 0.36
Trim56-201ENSMUST00000054384 NeflP08551 543 aa17.32■□□□□ 0.36
Trim56-201ENSMUST00000054384 Cdk11bP24788 784 aaKnown RBP17.28■□□□□ 0.36
Trim56-201ENSMUST00000054384 Anp32bQ9EST5 272 aaKnown RBP17.25■□□□□ 0.35
Trim56-201ENSMUST00000054384 NrdcQ8BHG1 1161 aa17.24■□□□□ 0.35
Trim56-201ENSMUST00000054384 Tnnt3Q9QZ47 272 aa17.21■□□□□ 0.35
Trim56-201ENSMUST00000054384 Eif5bQ05D44 1216 aaKnown RBP17.07■□□□□ 0.32
Trim56-201ENSMUST00000054384 NclP09405 707 aaKnown RBP17.05■□□□□ 0.32
Trim56-201ENSMUST00000054384 HrcG5E8J6 738 aa17.05■□□□□ 0.32
Trim56-201ENSMUST00000054384 Nop58Q6DFW4 536 aaKnown RBP17.01■□□□□ 0.31
Trim56-201ENSMUST00000054384 Neurod1Q60867 357 aa17.01■□□□□ 0.31
Trim56-201ENSMUST00000054384 Os9Q8K2C7 672 aa17.01■□□□□ 0.31
Trim56-201ENSMUST00000054384 Fam50aQ9WV03 339 aaKnown RBP16.99■□□□□ 0.31
Trim56-201ENSMUST00000054384 Pcgf6Q99NA9 353 aa16.95■□□□□ 0.3
Trim56-201ENSMUST00000054384 Rtl5Q5DTT4 599 aa16.95■□□□□ 0.3
Trim56-201ENSMUST00000054384 Il27Q8K3I6 234 aa16.91■□□□□ 0.3
Trim56-201ENSMUST00000054384 Ap3b1Q9Z1T1 1105 aa16.84■□□□□ 0.29
Trim56-201ENSMUST00000054384 TonslQ6NZL6 1363 aa16.78■□□□□ 0.28
Trim56-201ENSMUST00000054384 Ppargc1bQ8VHJ7 1014 aa16.72■□□□□ 0.27
Trim56-201ENSMUST00000054384 Supt5hO55201 1082 aaKnown RBP16.62■□□□□ 0.25
Trim56-201ENSMUST00000054384 DaxxO35613 739 aa16.61■□□□□ 0.25
Trim56-201ENSMUST00000054384 Zcchc6Q5BLK4 1491 aaKnown RBP16.58■□□□□ 0.24
Trim56-201ENSMUST00000054384 Anp32aO35381 247 aa16.54■□□□□ 0.24
Trim56-201ENSMUST00000054384 DiexfQ8BTT6 772 aaKnown RBP16.52■□□□□ 0.24
Trim56-201ENSMUST00000054384 Nlrp6Q91WS2 869 aa16.44■□□□□ 0.22
Trim56-201ENSMUST00000054384 Zbtb7cQ8VCZ7 619 aa16.42■□□□□ 0.22
Trim56-201ENSMUST00000054384 ClspnQ80YR7 1315 aa16.41■□□□□ 0.22
Trim56-201ENSMUST00000054384 Mier1Q5UAK0 511 aa16.41■□□□□ 0.22
Trim56-201ENSMUST00000054384 Gm13697A2AK42 830 aa16.4■□□□□ 0.22
Trim56-201ENSMUST00000054384 Chic1Q8CBW7 227 aa16.4■□□□□ 0.22
Trim56-201ENSMUST00000054384 Hnrnpul2Q00PI9 745 aaKnown RBP16.37■□□□□ 0.21
Trim56-201ENSMUST00000054384 CatipB9EKE5 520 aa16.36■□□□□ 0.21
Trim56-201ENSMUST00000054384 Polr3glQ8R0C0 218 aa16.34■□□□□ 0.21
Trim56-201ENSMUST00000054384 Gm35339A0A140LHH9 1649 aa16.34■□□□□ 0.21
Trim56-201ENSMUST00000054384 ArxO35085 564 aa16.3■□□□□ 0.2
Trim56-201ENSMUST00000054384 Atp1b4Q99ME6 356 aa16.26■□□□□ 0.19
Trim56-201ENSMUST00000054384 Erich6D3Z6S9 713 aa16.25■□□□□ 0.19
Trim56-201ENSMUST00000054384 Zbtb4Q5F293 982 aa16.24■□□□□ 0.19
Trim56-201ENSMUST00000054384 Upf2A2AT37 1269 aaKnown RBP16.22■□□□□ 0.19
Trim56-201ENSMUST00000054384 Lmod2Q3UHZ5 550 aa16.21■□□□□ 0.19
Trim56-201ENSMUST00000054384 Abcc9P70170 1546 aa16.2■□□□□ 0.18
Trim56-201ENSMUST00000054384 Plekhg3Q4VAC9 1341 aa16.19■□□□□ 0.18
Trim56-201ENSMUST00000054384 Hdac5Q9Z2V6 1113 aa16.19■□□□□ 0.18
Trim56-201ENSMUST00000054384 Prdm10Q3UTQ7 1184 aa16.16■□□□□ 0.18
Trim56-201ENSMUST00000054384 Gm13695A2AK44 830 aa16.14■□□□□ 0.17
Trim56-201ENSMUST00000054384 Hsp90aa1P07901 733 aaKnown RBP16.14■□□□□ 0.17
Trim56-201ENSMUST00000054384 Npm1Q61937 292 aaKnown RBP16.1■□□□□ 0.17
Trim56-201ENSMUST00000054384 Ythdc1E9Q5K9 736 aaKnown RBP16.09■□□□□ 0.17
Trim56-201ENSMUST00000054384 Mapk8ip2Q9ERE9 830 aa16.08■□□□□ 0.17
Trim56-201ENSMUST00000054384 Ifnlr1Q8CGK5 535 aa16.07■□□□□ 0.16
Trim56-201ENSMUST00000054384 Csrnp3P59055 597 aa16.05■□□□□ 0.16
Trim56-201ENSMUST00000054384 Lmod3E9QA62 571 aa16.05■□□□□ 0.16
Trim56-201ENSMUST00000054384 Gm38655A0A286YDK6 273 aa16.04■□□□□ 0.16
Trim56-201ENSMUST00000054384 DekQ7TNV0 380 aaKnown RBP16.01■□□□□ 0.15
Trim56-201ENSMUST00000054384 Ppp4r2Q0VGB7 417 aa15.99■□□□□ 0.15
Trim56-201ENSMUST00000054384 Calr4Q3TQS0 420 aa15.98■□□□□ 0.15
Trim56-201ENSMUST00000054384 Anks4bQ8K3X6 423 aa15.96■□□□□ 0.15
Trim56-201ENSMUST00000054384 Rangap1P46061 589 aaKnown RBP15.95■□□□□ 0.14
Trim56-201ENSMUST00000054384 Eid3Q3V124 375 aa15.92■□□□□ 0.14
Trim56-201ENSMUST00000054384 Aplp2Q06335 707 aa15.92■□□□□ 0.14
Trim56-201ENSMUST00000054384 Ccdc9Q8VC31 543 aaKnown RBP15.9■□□□□ 0.14
Trim56-201ENSMUST00000054384 Trim44Q9QXA7 346 aa15.89■□□□□ 0.13
Trim56-201ENSMUST00000054384 Vsig10D3YX43 558 aa15.87■□□□□ 0.13
Trim56-201ENSMUST00000054384 Clip1Q922J3 1391 aa15.86■□□□□ 0.13
Trim56-201ENSMUST00000054384 Rad21Q61550 635 aaKnown RBP15.86■□□□□ 0.13
Trim56-201ENSMUST00000054384 Wdr43Q6ZQL4 677 aaKnown RBP15.85■□□□□ 0.13
Trim56-201ENSMUST00000054384 Ccer2J3QPU5 274 aa15.83■□□□□ 0.12
Trim56-201ENSMUST00000054384 Fgd1P52734 960 aa15.81■□□□□ 0.12
Trim56-201ENSMUST00000054384 Dcaf1Q80TR8 1506 aa15.79■□□□□ 0.12
Trim56-201ENSMUST00000054384 Sall2Q9QX96 1004 aa15.77■□□□□ 0.11
Trim56-201ENSMUST00000054384 Hsp90ab1P11499 724 aaKnown RBP15.76■□□□□ 0.11
Trim56-201ENSMUST00000054384 Plppr3Q7TPB0 716 aa15.75■□□□□ 0.11
Retrieved 100 of 22,080 RNA–protein pairs in 30 ms