RNA–Protein interactions for RNA: YDR364C

CDC40, Transcript of Pre-mRNA splicing factor, yeastyeast

Gene CDC40, Length 1,368 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC40YDR364C FAP7Q12055 197 aaPredicted RBP3.98□□□□□ -1.77
CDC40YDR364C MSL5Q12186 476 aaKnown RBP RIP-Chip data3.98□□□□□ -1.77not detected
CDC40YDR364C GIN4Q12263 1142 aa3.98□□□□□ -1.77
CDC40YDR364C TMA7Q3E764 64 aaKnown RBP3.98□□□□□ -1.77
CDC40YDR364C RPO41P13433 1351 aaKnown RBP3.97□□□□□ -1.77
CDC40YDR364C RPP0P05317 312 aaKnown RBP3.97□□□□□ -1.77
CDC40YDR364C TRX2P22803 104 aaKnown RBP3.97□□□□□ -1.77
CDC40YDR364C RPC82P32349 654 aa3.97□□□□□ -1.77
CDC40YDR364C YKL107WP34251 309 aa3.97□□□□□ -1.77
CDC40YDR364C FUI1P38196 639 aa3.97□□□□□ -1.77
CDC40YDR364C GDH3P39708 457 aa3.97□□□□□ -1.77
CDC40YDR364C SNF7P39929 240 aaKnown RBP3.97□□□□□ -1.77
CDC40YDR364C RTR1P40084 226 aaPredicted RBP3.97□□□□□ -1.77
CDC40YDR364C YGL176CP46945 554 aa3.97□□□□□ -1.77
CDC40YDR364C SDA1P53313 767 aaKnown RBP3.97□□□□□ -1.77
CDC40YDR364C SLU7Q02775 382 aaKnown RBP3.97□□□□□ -1.77
CDC40YDR364C UME1Q03010 460 aa3.97□□□□□ -1.77
CDC40YDR364C CEF1Q03654 590 aaPredicted RBP3.97□□□□□ -1.77
CDC40YDR364C VMS1Q04311 632 aaKnown RBP3.97□□□□□ -1.77
CDC40YDR364C TRM13Q12383 476 aa3.97□□□□□ -1.77
CDC40YDR364C PWP2P25635 923 aaKnown RBP3.96□□□□□ -1.78
CDC40YDR364C PIN4P34217 668 aaKnown RBP RIP-Chip data3.96□□□□□ -1.78not detected
CDC40YDR364C VPS24P36095 224 aaKnown RBP3.96□□□□□ -1.78
CDC40YDR364C RRP46P53256 223 aaPredicted RBP3.96□□□□□ -1.78
CDC40YDR364C YNL193WP53870 558 aa3.96□□□□□ -1.78
CDC40YDR364C SND1Q04007 877 aa3.96□□□□□ -1.78
CDC40YDR364C GSY1P23337 708 aa3.95□□□□□ -1.78
CDC40YDR364C DPB3P27344 201 aa3.95□□□□□ -1.78
CDC40YDR364C CDC11P32458 415 aa3.95□□□□□ -1.78
CDC40YDR364C YBR284WP38150 797 aa3.95□□□□□ -1.78
CDC40YDR364C NPP2P39997 493 aa3.95□□□□□ -1.78
CDC40YDR364C VPS27P40343 622 aaKnown RBP3.95□□□□□ -1.78
CDC40YDR364C SDS3P40505 327 aa3.95□□□□□ -1.78
CDC40YDR364C MPP10P47083 593 aaKnown RBP3.95□□□□□ -1.78
CDC40YDR364C HBT1Q07653 1046 aaKnown RBP3.95□□□□□ -1.78
CDC40YDR364C CDC45Q08032 650 aa3.95□□□□□ -1.78
CDC40YDR364C YOR378WQ08902 515 aa3.95□□□□□ -1.78
CDC40YDR364C SLM3Q12093 417 aa3.95□□□□□ -1.78
CDC40YDR364C SED4P25365 1065 aa3.94□□□□□ -1.78
CDC40YDR364C PRD1P25375 712 aa3.94□□□□□ -1.78
CDC40YDR364C HIR1P32479 840 aa3.94□□□□□ -1.78
CDC40YDR364C AKL1P38080 1108 aaKnown RBP3.94□□□□□ -1.78
CDC40YDR364C ERP2P39704 215 aa3.94□□□□□ -1.78
CDC40YDR364C ATG16Q03818 150 aa3.94□□□□□ -1.78
CDC40YDR364C YDR306CQ06640 478 aa3.94□□□□□ -1.78
CDC40YDR364C HBN1Q96VH4 193 aa3.94□□□□□ -1.78
CDC40YDR364C RSF2P46974 1380 aa3.94□□□□□ -1.78
CDC40YDR364C TOP3P13099 656 aa3.93□□□□□ -1.78
CDC40YDR364C SUI2P20459 304 aaKnown RBP3.93□□□□□ -1.78
CDC40YDR364C RPA135P22138 1203 aaKnown RBP3.93□□□□□ -1.78
CDC40YDR364C MEF1P25039 761 aa3.93□□□□□ -1.78
CDC40YDR364C AAR2P32357 355 aaPredicted RBP3.93□□□□□ -1.78
CDC40YDR364C SAH1P39954 449 aaKnown RBP3.93□□□□□ -1.78
CDC40YDR364C MAL11P53048 616 aa3.93□□□□□ -1.78
CDC40YDR364C PEX14P53112 341 aa3.93□□□□□ -1.78
CDC40YDR364C SFB2P53953 876 aa3.93□□□□□ -1.78
CDC40YDR364C TMA64Q04600 565 aaKnown RBP3.93□□□□□ -1.78
CDC40YDR364C THI22Q06490 572 aa3.93□□□□□ -1.78
CDC40YDR364C ENT1Q12518 454 aa3.93□□□□□ -1.78
CDC40YDR364C YRF1-2P40105 1681 aa3.93□□□□□ -1.78
CDC40YDR364C SIR4P11978 1358 aa3.93□□□□□ -1.78
CDC40YDR364C SNF2P22082 1703 aa3.93□□□□□ -1.78
CDC40YDR364C PHR1P05066 565 aaKnown RBP RIP-Chip data3.92□□□□□ -1.78not detected
CDC40YDR364C VBA3P25594 458 aa3.92□□□□□ -1.78
CDC40YDR364C TRE2Q08693 809 aa3.92□□□□□ -1.78
CDC40YDR364C SUT2Q12286 268 aa3.92□□□□□ -1.78
CDC40YDR364C YPR071WQ12346 211 aa3.92□□□□□ -1.78
CDC40YDR364C RVB2Q12464 471 aaKnown RBP3.92□□□□□ -1.78
CDC40YDR364C YRF1-4O13559 1382 aa3.92□□□□□ -1.78
CDC40YDR364C HBS1P32769 611 aaKnown RBP3.91□□□□□ -1.78
CDC40YDR364C DSD1P53095 428 aa3.91□□□□□ -1.78
CDC40YDR364C GPG1P53130 126 aa3.91□□□□□ -1.78
CDC40YDR364C HFD1Q04458 532 aa3.91□□□□□ -1.78
CDC40YDR364C COQ11Q05892 277 aa3.91□□□□□ -1.78
CDC40YDR364C IMH1Q06704 911 aaKnown RBP3.91□□□□□ -1.78
CDC40YDR364C RTT109Q07794 436 aa3.91□□□□□ -1.78
CDC40YDR364C MRH1Q12117 320 aaPredicted RBP3.91□□□□□ -1.78
CDC40YDR364C MPD2Q99316 277 aa3.91□□□□□ -1.78
CDC40YDR364C ATP4P05626 244 aa3.9□□□□□ -1.78
CDC40YDR364C RAD18P10862 487 aa3.9□□□□□ -1.78
CDC40YDR364C HSP104P31539 908 aaKnown RBP3.9□□□□□ -1.78
CDC40YDR364C EUG1P32474 517 aa3.9□□□□□ -1.78
CDC40YDR364C PEX2P32800 271 aa3.9□□□□□ -1.78
CDC40YDR364C PPS1P38148 807 aa3.9□□□□□ -1.78
CDC40YDR364C YBR071WP38243 211 aa3.9□□□□□ -1.78
CDC40YDR364C YHL017WP38745 532 aa3.9□□□□□ -1.78
CDC40YDR364C FUN12P39730 1002 aaKnown RBP3.9□□□□□ -1.78
CDC40YDR364C UBP6P43593 499 aaKnown RBP3.9□□□□□ -1.78
CDC40YDR364C RAI1P53063 387 aaKnown RBP3.9□□□□□ -1.78
CDC40YDR364C COG6P53959 839 aa3.9□□□□□ -1.78
CDC40YDR364C HEF3P53978 1044 aaKnown RBP3.9□□□□□ -1.78
CDC40YDR364C HOF1Q05080 669 aa3.9□□□□□ -1.78
CDC40YDR364C FRE5Q08908 694 aa3.9□□□□□ -1.78
CDC40YDR364C AFT2Q08957 416 aa3.9□□□□□ -1.78
CDC40YDR364C NKP1Q12493 238 aa3.9□□□□□ -1.78
CDC40YDR364C MDM12Q92328 271 aa3.9□□□□□ -1.78
CDC40YDR364C MSD1P15179 658 aaKnown RBP3.89□□□□□ -1.79
CDC40YDR364C CDC12P32468 407 aaKnown RBP3.89□□□□□ -1.79
CDC40YDR364C TFC4P33339 1025 aa3.89□□□□□ -1.79
CDC40YDR364C CTF13P35203 478 aa3.89□□□□□ -1.79
Retrieved 100 of 5,963 RNA–protein pairs in 400.2 ms