Protein–RNA interactions for Protein: P25594

VBA3, Vacuolar basic amino acid transporter 3, yeastyeast

Predictions only

Length 458 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VBA3P25594 YML009W-BYML009W-B 477 nt21.71■■□□□ 1.07
VBA3P25594 NSR1YGR159C 1245 nt21.49■■□□□ 1.03
VBA3P25594 NOP1YDL014W 984 nt21.11■□□□□ 0.97
VBA3P25594 YKL036CYKL036C 393 nt19.56■□□□□ 0.72
VBA3P25594 MDJ1YFL016C 1536 nt19.04■□□□□ 0.64
VBA3P25594 Q0297Q0297 156 nt18.52■□□□□ 0.56
VBA3P25594 SRX1YKL086W 384 nt18.46■□□□□ 0.55
VBA3P25594 YJL027CYJL027C 417 nt18.28■□□□□ 0.52
VBA3P25594 SCS3YGL126W 1143 nt17.85■□□□□ 0.45
VBA3P25594 YCR051WYCR051W 669 nt17.52■□□□□ 0.4
VBA3P25594 YOL085CYOL085C 342 nt16.96■□□□□ 0.31
VBA3P25594 DBP2YNL112W 1641 nt16.88■□□□□ 0.29
VBA3P25594 PKP1YIL042C 1185 nt16.7■□□□□ 0.26
VBA3P25594 TRN1tP(UGG)A 72 nt16.65■□□□□ 0.26
VBA3P25594 SUF9tP(UGG)F 72 nt16.65■□□□□ 0.26
VBA3P25594 SUF8tP(UGG)H 72 nt16.65■□□□□ 0.26
VBA3P25594 tP(UGG)LtP(UGG)L 72 nt16.65■□□□□ 0.26
VBA3P25594 SUF7tP(UGG)M 72 nt16.65■□□□□ 0.26
VBA3P25594 tP(UGG)N1tP(UGG)N1 72 nt16.65■□□□□ 0.26
VBA3P25594 tP(UGG)N2tP(UGG)N2 72 nt16.65■□□□□ 0.26
VBA3P25594 tP(UGG)O1tP(UGG)O1 72 nt16.65■□□□□ 0.26
VBA3P25594 SUF11tP(UGG)O2 72 nt16.65■□□□□ 0.26
VBA3P25594 RPP1BYDL130W 321 nt16.62■□□□□ 0.25
VBA3P25594 CCC1YLR220W 969 nt16.49■□□□□ 0.23
VBA3P25594 YBR190WYBR190W 312 nt16.19■□□□□ 0.18
VBA3P25594 ATS1YAL020C 1002 nt15.98■□□□□ 0.15
VBA3P25594 PET122YER153C 765 nt15.88■□□□□ 0.13
VBA3P25594 SCJ1YMR214W 1134 nt15.88■□□□□ 0.13
VBA3P25594 RVS167YDR388W 1449 nt15.85■□□□□ 0.13
VBA3P25594 RTC3YHR087W 336 nt15.84■□□□□ 0.13
VBA3P25594 tP(UGG)O3tP(UGG)O3 72 nt15.78■□□□□ 0.12
VBA3P25594 SCR1SCR1 522 nt15.71■□□□□ 0.11
VBA3P25594 RRN5YLR141W 1092 nt15.43■□□□□ 0.06
VBA3P25594 SHR5YOL110W 714 nt15.34■□□□□ 0.05
VBA3P25594 YDJ1YNL064C 1230 nt15.25■□□□□ 0.03
VBA3P25594 YER088W-BYER088W-B 147 nt15.13■□□□□ 0.01
VBA3P25594 RSB1YOR049C 1065 nt15.13■□□□□ 0.01
VBA3P25594 GAR1YHR089C 618 nt14.92□□□□□ -0.02
VBA3P25594 DEP1YAL013W 1218 nt14.89□□□□□ -0.03
VBA3P25594 URN1YPR152C 1398 nt14.86□□□□□ -0.03
VBA3P25594 PST2YDR032C 597 nt14.79□□□□□ -0.04
VBA3P25594 PUT4YOR348C 1884 nt14.65□□□□□ -0.06
VBA3P25594 YNL208WYNL208W 600 nt14.65□□□□□ -0.06
VBA3P25594 RPN10YHR200W 807 nt14.64□□□□□ -0.07
VBA3P25594 OPI9YLR338W 858 nt14.62□□□□□ -0.07
VBA3P25594 SAH1YER043C 1350 nt14.53□□□□□ -0.08
VBA3P25594 ARE1YCR048W 1833 nt14.42□□□□□ -0.1
VBA3P25594 TIR1YER011W 765 nt14.4□□□□□ -0.1
VBA3P25594 YKL097CYKL097C 411 nt14.24□□□□□ -0.13
VBA3P25594 YHR049C-AYHR049C-A 297 nt14.23□□□□□ -0.13
VBA3P25594 SSA1YAL005C 1929 nt14.23□□□□□ -0.13
VBA3P25594 POA1YBR022W 534 nt14.21□□□□□ -0.13
VBA3P25594 PUN1YLR414C 792 nt14.19□□□□□ -0.14
VBA3P25594 SHU1YHL006C 453 nt14.18□□□□□ -0.14
VBA3P25594 YJR018WYJR018W 363 nt14.18□□□□□ -0.14
VBA3P25594 SRB2YHR041C 633 nt14.03□□□□□ -0.16
VBA3P25594 PTC2YER089C 1395 nt14.03□□□□□ -0.16
VBA3P25594 YJR120WYJR120W 351 nt14.01□□□□□ -0.17
VBA3P25594 Q0182Q0182 405 nt13.96□□□□□ -0.17
VBA3P25594 YAL037C-BYAL037C-B 975 nt13.95□□□□□ -0.18
VBA3P25594 BUD23YCR047C 828 nt13.91□□□□□ -0.18
VBA3P25594 RPP2BYDR382W 333 nt13.9□□□□□ -0.18
VBA3P25594 BSC6YOL137W 1494 nt13.88□□□□□ -0.19
VBA3P25594 NAB2YGL122C 1578 nt13.82□□□□□ -0.2
VBA3P25594 WWM1YFL010C 636 nt13.8□□□□□ -0.2
VBA3P25594 YGR021WYGR021W 873 nt13.72□□□□□ -0.21
VBA3P25594 HOM6YJR139C 1080 nt13.69□□□□□ -0.22
VBA3P25594 YOR139CYOR139C 393 nt13.68□□□□□ -0.22
VBA3P25594 INM2YDR287W 879 nt13.65□□□□□ -0.22
VBA3P25594 MNP1YGL068W 585 nt13.65□□□□□ -0.22
VBA3P25594 FIS1YIL065C 468 nt13.65□□□□□ -0.22
VBA3P25594 BDH2YAL061W 1254 nt13.65□□□□□ -0.22
VBA3P25594 DAL1YIR027C 1383 nt13.65□□□□□ -0.22
VBA3P25594 FPR4YLR449W 1179 nt13.64□□□□□ -0.23
VBA3P25594 SSA3YBL075C 1950 nt13.62□□□□□ -0.23
VBA3P25594 YFL021C-AYFL021C-A 855 nt13.56□□□□□ -0.24
VBA3P25594 YBL100CYBL100C 315 nt13.55□□□□□ -0.24
VBA3P25594 PHO4YFR034C 939 nt13.54□□□□□ -0.24
VBA3P25594 MOT3YMR070W 1473 nt13.54□□□□□ -0.24
VBA3P25594 NPL3YDR432W 1245 nt13.53□□□□□ -0.24
VBA3P25594 RKM5YLR137W 1104 nt13.49□□□□□ -0.25
VBA3P25594 LSM3YLR438C-A 270 nt13.48□□□□□ -0.25
VBA3P25594 YOL037CYOL037C 354 nt13.43□□□□□ -0.26
VBA3P25594 FUN26YAL022C 1554 nt13.4□□□□□ -0.26
VBA3P25594 TRM9YML014W 840 nt13.37□□□□□ -0.27
VBA3P25594 CCT6YDR188W 1641 nt13.24□□□□□ -0.29
VBA3P25594 YPS1YLR120C 1710 nt13.23□□□□□ -0.29
VBA3P25594 ALF1YNL148C 765 nt13.18□□□□□ -0.3
VBA3P25594 YDR095CYDR095C 411 nt13.17□□□□□ -0.3
VBA3P25594 SPT5YML010W 3192 nt13.15□□□□□ -0.3
VBA3P25594 tM(CAU)CtM(CAU)C 72 nt13.14□□□□□ -0.31
VBA3P25594 IMT4tM(CAU)E 72 nt13.14□□□□□ -0.31
VBA3P25594 IMT3tM(CAU)J3 72 nt13.14□□□□□ -0.31
VBA3P25594 IMT1tM(CAU)O1 72 nt13.14□□□□□ -0.31
VBA3P25594 IMT2tM(CAU)P 72 nt13.14□□□□□ -0.31
VBA3P25594 YLR281CYLR281C 468 nt13.13□□□□□ -0.31
VBA3P25594 SUF2tP(AGG)C 72 nt13.11□□□□□ -0.31
VBA3P25594 SUF10tP(AGG)N 72 nt13.11□□□□□ -0.31
VBA3P25594 YHR165W-AYHR165W-A 312 nt13.09□□□□□ -0.31
VBA3P25594 WHI5YOR083W 888 nt13.08□□□□□ -0.32
Retrieved 100 of 7,029 protein–RNA pairs in 10.6 ms