RNA–Protein interactions for RNA: YIL123W

SIM1, Transcript of Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p), yeastyeast

Gene SIM1, Length 1,431 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIM1YIL123W RPC25P35718 212 aa12.34□□□□□ -0.43
SIM1YIL123W CCC2P38995 1004 aa12.34□□□□□ -0.43
SIM1YIL123W BIM1P40013 344 aa12.34□□□□□ -0.43
SIM1YIL123W GPD2P41911 440 aaKnown RBP12.34□□□□□ -0.43
SIM1YIL123W TOS3P43637 560 aa12.34□□□□□ -0.43
SIM1YIL123W YJL007CP47080 104 aa12.34□□□□□ -0.43
SIM1YIL123W ERG5P54781 538 aa12.34□□□□□ -0.43
SIM1YIL123W NEW1Q08972 1196 aaKnown RBP12.34□□□□□ -0.43
SIM1YIL123W PLP2Q12017 286 aa12.34□□□□□ -0.43
SIM1YIL123W RRP6Q12149 733 aaKnown RBP12.34□□□□□ -0.43
SIM1YIL123W ESS1P22696 170 aa12.33□□□□□ -0.44
SIM1YIL123W RRP43P25359 394 aaPredicted RBP12.33□□□□□ -0.44
SIM1YIL123W SUV3P32580 737 aa12.33□□□□□ -0.44
SIM1YIL123W TCB2P48231 1178 aa12.33□□□□□ -0.44
SIM1YIL123W PHM6Q05637 104 aa12.33□□□□□ -0.44
SIM1YIL123W SPO75Q07798 868 aa12.33□□□□□ -0.44
SIM1YIL123W CWC2Q12046 339 aaPredicted RBP12.33□□□□□ -0.44
SIM1YIL123W TY1B-AO13527 1196 aaKnown RBP12.32□□□□□ -0.44
SIM1YIL123W SRD1P09007 221 aa12.32□□□□□ -0.44
SIM1YIL123W SEC23P15303 768 aaKnown RBP12.32□□□□□ -0.44
SIM1YIL123W PRP22P24384 1145 aaKnown RBP12.32□□□□□ -0.44
SIM1YIL123W CDC60P26637 1090 aaKnown RBP12.32□□□□□ -0.44
SIM1YIL123W UBP11P36026 717 aa12.32□□□□□ -0.44
SIM1YIL123W YFL034WP43564 1073 aa12.32□□□□□ -0.44
SIM1YIL123W APT1P49435 187 aaKnown RBP12.32□□□□□ -0.44
SIM1YIL123W VID30P53076 958 aa12.32□□□□□ -0.44
SIM1YIL123W CAF130P53280 1122 aaPredicted RBP12.32□□□□□ -0.44
SIM1YIL123W DIP5P53388 608 aa12.32□□□□□ -0.44
SIM1YIL123W UBX5Q06682 500 aa12.32□□□□□ -0.44
SIM1YIL123W YDL057WQ07379 328 aa12.32□□□□□ -0.44
SIM1YIL123W PGK1P00560 416 aaKnown RBP12.31□□□□□ -0.44
SIM1YIL123W SAM1P10659 382 aaKnown RBP12.31□□□□□ -0.44
SIM1YIL123W SUP45P12385 437 aaKnown RBP12.31□□□□□ -0.44
SIM1YIL123W CLN3P13365 580 aa12.31□□□□□ -0.44
SIM1YIL123W CAJ1P39101 391 aa12.31□□□□□ -0.44
SIM1YIL123W VAB2P40003 282 aa12.31□□□□□ -0.44
SIM1YIL123W SHQ1P40486 507 aaPredicted RBP12.31□□□□□ -0.44
SIM1YIL123W NBP1P52919 319 aaPredicted RBP12.31□□□□□ -0.44
SIM1YIL123W PTA1Q01329 785 aaPredicted RBP12.31□□□□□ -0.44
SIM1YIL123W VPS60Q03390 229 aa12.31□□□□□ -0.44
SIM1YIL123W PUS5Q06244 254 aa12.31□□□□□ -0.44
SIM1YIL123W YPL277CQ08989 487 aa12.31□□□□□ -0.44
SIM1YIL123W SSB1P11484 613 aaKnown RBP12.3□□□□□ -0.44
SIM1YIL123W SPO12P17123 173 aa12.3□□□□□ -0.44
SIM1YIL123W PET123P17558 318 aa12.3□□□□□ -0.44
SIM1YIL123W YDJ1P25491 409 aaKnown RBP12.3□□□□□ -0.44
SIM1YIL123W APL1P27351 700 aa12.3□□□□□ -0.44
SIM1YIL123W STO1P34160 861 aaKnown RBP12.3□□□□□ -0.44
SIM1YIL123W UBP5P39944 805 aa12.3□□□□□ -0.44
SIM1YIL123W SSB2P40150 613 aaKnown RBP12.3□□□□□ -0.44
SIM1YIL123W ATG3P40344 310 aa12.3□□□□□ -0.44
SIM1YIL123W UME1Q03010 460 aa12.3□□□□□ -0.44
SIM1YIL123W PEX29Q03370 554 aa12.3□□□□□ -0.44
SIM1YIL123W MED1Q12321 566 aa12.3□□□□□ -0.44
SIM1YIL123W TRK2P28584 889 aa12.29□□□□□ -0.44
SIM1YIL123W MCR1P36060 302 aaKnown RBP12.29□□□□□ -0.44
SIM1YIL123W YAP5P40574 245 aa12.29□□□□□ -0.44
SIM1YIL123W RRT6P53117 311 aaPredicted RBP12.29□□□□□ -0.44
SIM1YIL123W SFI1Q12369 946 aa12.29□□□□□ -0.44
SIM1YIL123W YOL098CQ12496 1037 aa12.29□□□□□ -0.44
SIM1YIL123W PCK1P10963 549 aa12.28□□□□□ -0.44
SIM1YIL123W DAL7P21826 554 aa12.28□□□□□ -0.44
SIM1YIL123W CLB5P30283 435 aa12.28□□□□□ -0.44
SIM1YIL123W YKR018CP36114 725 aa12.28□□□□□ -0.44
SIM1YIL123W PNT1P38969 423 aa12.28□□□□□ -0.44
SIM1YIL123W ULP2P40537 1034 aaPredicted RBP12.28□□□□□ -0.44
SIM1YIL123W UTP5Q04177 643 aaKnown RBP12.28□□□□□ -0.44
SIM1YIL123W CUR1Q06469 252 aa12.28□□□□□ -0.44
SIM1YIL123W ISA1Q07821 250 aaPredicted RBP12.28□□□□□ -0.44
SIM1YIL123W FKS1P38631 1876 aaKnown RBP12.28□□□□□ -0.44
SIM1YIL123W PPR1P07272 904 aaPredicted RBP12.28□□□□□ -0.44
SIM1YIL123W MTF2P10849 440 aa12.28□□□□□ -0.44
SIM1YIL123W UBC1P21734 215 aaKnown RBP12.28□□□□□ -0.44
SIM1YIL123W STE11P23561 717 aa12.28□□□□□ -0.44
SIM1YIL123W MRF1P30775 413 aaPredicted RBP12.28□□□□□ -0.44
SIM1YIL123W PGM2P37012 569 aaKnown RBP12.28□□□□□ -0.44
SIM1YIL123W MCX1P38323 520 aaPredicted RBP12.28□□□□□ -0.44
SIM1YIL123W SEC9P40357 651 aa12.28□□□□□ -0.44
SIM1YIL123W FIS1P40515 155 aa12.28□□□□□ -0.44
SIM1YIL123W MCM16Q12262 181 aa12.28□□□□□ -0.44
SIM1YIL123W RKM4Q12504 494 aa12.28□□□□□ -0.44
SIM1YIL123W UTR4P32626 227 aa12.27□□□□□ -0.45
SIM1YIL123W RPN3P40016 523 aaKnown RBP12.27□□□□□ -0.45
SIM1YIL123W EFM4P40516 257 aa12.27□□□□□ -0.45
SIM1YIL123W DUS3Q06053 668 aaKnown RBP12.27□□□□□ -0.45
SIM1YIL123W TCP1P12612 559 aaKnown RBP12.26□□□□□ -0.45
SIM1YIL123W PDC6P26263 563 aaKnown RBP12.26□□□□□ -0.45
SIM1YIL123W SHP1P34223 423 aa12.26□□□□□ -0.45
SIM1YIL123W TCD1P38756 429 aa12.26□□□□□ -0.45
SIM1YIL123W SMC2P38989 1170 aaKnown RBP12.26□□□□□ -0.45
SIM1YIL123W TOF1P53840 1238 aa12.26□□□□□ -0.45
SIM1YIL123W ARK1P53974 638 aa12.26□□□□□ -0.45
SIM1YIL123W SML1Q04964 104 aa12.26□□□□□ -0.45
SIM1YIL123W GPB2P39717 880 aa12.25□□□□□ -0.45
SIM1YIL123W NDC80P40460 691 aa12.25□□□□□ -0.45
SIM1YIL123W IES1P43579 692 aa12.25□□□□□ -0.45
SIM1YIL123W NET1P47035 1189 aa12.25□□□□□ -0.45
SIM1YIL123W CCM1P48237 864 aaPredicted RBP12.25□□□□□ -0.45
SIM1YIL123W CTR1P49573 406 aa12.25□□□□□ -0.45
SIM1YIL123W ZPR1P53303 486 aaKnown RBP12.25□□□□□ -0.45
Retrieved 100 of 5,963 RNA–protein pairs in 43.1 ms