Protein–RNA interactions for Protein: Q9Y221

NIP7, 60S ribosome subunit biogenesis protein NIP7 homolog, humanhuman

Known RBP eCLIP

Length 180 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIP7Q9Y221 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC29.62■■■□□ 2.331e-7■■□□□ 13.5
NIP7Q9Y221 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.311e-7■■□□□ 13.5
NIP7Q9Y221 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.215e-6■■□□□ 13.5
NIP7Q9Y221 AJUBA-205ENST00000553736 751 ntTSL 226.54■■□□□ 1.845e-6■■□□□ 13.5
NIP7Q9Y221 AHNAK-208ENST00000533365 584 ntAPPRIS ALT2 TSL 524.72■■□□□ 1.555e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.435e-6■■□□□ 13.5
NIP7Q9Y221 SLC2A1-202ENST00000415851 578 ntTSL 223.61■■□□□ 1.371e-7■■□□□ 13.5
NIP7Q9Y221 SLC2A1-206ENST00000625233 1031 ntTSL 223.37■■□□□ 1.331e-7■■□□□ 13.5
NIP7Q9Y221 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC22.93■■□□□ 1.265e-6■■□□□ 13.5
NIP7Q9Y221 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC21.63■■□□□ 1.055e-6■■□□□ 13.5
NIP7Q9Y221 SLC2A1-201ENST00000372500 533 ntTSL 320.81■□□□□ 0.921e-7■■□□□ 13.5
NIP7Q9Y221 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.915e-6■■□□□ 13.5
NIP7Q9Y221 CRLF1-204ENST00000596360 413 ntTSL 220.73■□□□□ 0.911e-7■■□□□ 13.5
NIP7Q9Y221 SERPINF1-205ENST00000571360 478 ntTSL 320.56■□□□□ 0.882e-6■■□□□ 13.5
NIP7Q9Y221 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.785e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.755e-6■■□□□ 13.5
NIP7Q9Y221 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.75e-6■■□□□ 13.5
NIP7Q9Y221 SLC2A1-205ENST00000475162 598 ntTSL 518.78■□□□□ 0.61e-7■■□□□ 13.5
NIP7Q9Y221 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.585e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-205ENST00000572105 1168 ntTSL 517.99■□□□□ 0.475e-6■■□□□ 13.5
NIP7Q9Y221 SLC2A1-208ENST00000630287 2398 ntTSL 517.76■□□□□ 0.431e-7■■□□□ 13.5
NIP7Q9Y221 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.411e-7■■□□□ 13.5
NIP7Q9Y221 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.365e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-213ENST00000576214 1024 ntTSL 516.7■□□□□ 0.265e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-215ENST00000576917 1958 ntTSL 516.18■□□□□ 0.185e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-216ENST00000615544 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.145e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-214ENST00000576544 1720 ntTSL 515.82■□□□□ 0.125e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.095e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-212ENST00000576209 1698 ntTSL 1 (best)15.38■□□□□ 0.055e-6■■□□□ 13.5
NIP7Q9Y221 SREBF2-202ENST00000424354 5699 ntTSL 1 (best)15.31■□□□□ 0.045e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-207ENST00000574671 1678 ntTSL 1 (best)14.4□□□□□ -0.15e-6■■□□□ 13.5
NIP7Q9Y221 LRP1-207ENST00000554174 2175 ntTSL 1 (best) BASIC14.32□□□□□ -0.125e-6■■□□□ 13.5
NIP7Q9Y221 FLNB-203ENST00000419752 2002 ntTSL 5 BASIC14□□□□□ -0.171e-7■■□□□ 13.5
NIP7Q9Y221 SLC2A1-203ENST00000426263 3667 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.241e-7■■□□□ 13.5
NIP7Q9Y221 AL132780.3-201ENST00000555074 835 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.255e-6■■□□□ 13.5
NIP7Q9Y221 LRP1-202ENST00000338962 2169 ntTSL 1 (best) BASIC13.38□□□□□ -0.275e-6■■□□□ 13.5
NIP7Q9Y221 DHFR-205ENST00000511032 1474 ntTSL 2 BASIC13.09□□□□□ -0.311e-7■■□□□ 13.5
NIP7Q9Y221 SELENOP-214ENST00000514985 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.375e-6■■□□□ 13.5
NIP7Q9Y221 FLNB-211ENST00000484981 932 ntTSL 512.57□□□□□ -0.41e-7■■□□□ 13.5
NIP7Q9Y221 PCK1-201ENST00000319441 4341 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.454e-6■■□□□ 13.5
NIP7Q9Y221 FLNB-201ENST00000295956 9463 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.471e-7■■□□□ 13.5
NIP7Q9Y221 DHFR-202ENST00000504396 1447 ntTSL 2 BASIC12.09□□□□□ -0.471e-7■■□□□ 13.5
NIP7Q9Y221 FLNB-204ENST00000429972 9430 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.481e-7■■□□□ 13.5
NIP7Q9Y221 PCK1-202ENST00000467047 5074 ntTSL 1 (best)12.03□□□□□ -0.484e-6■■□□□ 13.5
NIP7Q9Y221 DHFR-206ENST00000513048 994 ntTSL 1 (best)11.63□□□□□ -0.551e-7■■□□□ 13.5
NIP7Q9Y221 FLNB-202ENST00000358537 9391 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.571e-7■■□□□ 13.5
NIP7Q9Y221 FLNB-210ENST00000481470 6497 ntTSL 1 (best)11.46□□□□□ -0.581e-7■■□□□ 13.5
NIP7Q9Y221 FLNB-214ENST00000493452 7402 ntTSL 1 (best) BASIC10.96□□□□□ -0.661e-7■■□□□ 13.5
NIP7Q9Y221 FLNB-212ENST00000490882 8079 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.71e-7■■□□□ 13.5
NIP7Q9Y221 SELENOP-210ENST00000512980 4175 ntTSL 27.78□□□□□ -1.165e-6■■□□□ 13.5
NIP7Q9Y221 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.95□□□□□ -1.465e-6■■□□□ 13.5
NIP7Q9Y221 DHFR-204ENST00000508282 545 ntTSL 33.77□□□□□ -1.811e-7■■□□□ 13.5
NIP7Q9Y221 DHFR-207ENST00000513314 582 ntTSL 32.9□□□□□ -1.951e-7■■□□□ 13.5
NIP7Q9Y221 DDX39B-206ENST00000419338 928 ntTSL 518.81■□□□□ 0.65e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-208ENST00000428098 817 ntTSL 316.25■□□□□ 0.195e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-212ENST00000456662 932 ntTSL 516.25■□□□□ 0.195e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-210ENST00000431908 914 ntTSL 515.7■□□□□ 0.15e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-201ENST00000376177 1529 ntTSL 5 BASIC14.74□□□□□ -0.055e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-220ENST00000482195 1232 ntTSL 213.75□□□□□ -0.215e-52■■□□□ 13.4
NIP7Q9Y221 ATP6V1G2-DDX39B-201ENST00000376185 2039 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.285e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-214ENST00000458640 2003 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.345e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-219ENST00000481456 5158 ntTSL 212.76□□□□□ -0.375e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-202ENST00000396172 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.425e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-215ENST00000462256 4027 ntTSL 211.61□□□□□ -0.555e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-207ENST00000427214 1005 ntTSL 58.74□□□□□ -1.015e-52■■□□□ 13.4
NIP7Q9Y221 ALB-203ENST00000415165 1483 ntTSL 1 (best) BASIC9.08□□□□□ -0.962e-44■■□□□ 13.4
NIP7Q9Y221 ALB-209ENST00000503124 1741 ntTSL 5 BASIC7.3□□□□□ -1.242e-44■■□□□ 13.4
NIP7Q9Y221 ALB-211ENST00000505649 1509 ntTSL 56.87□□□□□ -1.312e-44■■□□□ 13.4
NIP7Q9Y221 ALB-220ENST00000621628 1606 ntTSL 5 BASIC6.61□□□□□ -1.352e-44■■□□□ 13.4
NIP7Q9Y221 ALB-205ENST00000476441 1604 ntTSL 56.61□□□□□ -1.352e-44■■□□□ 13.4
NIP7Q9Y221 ALB-216ENST00000511370 1519 ntTSL 56.6□□□□□ -1.352e-44■■□□□ 13.4
NIP7Q9Y221 ALB-219ENST00000621085 1418 ntTSL 5 BASIC6.38□□□□□ -1.392e-44■■□□□ 13.4
NIP7Q9Y221 ALB-214ENST00000509063 1911 ntTSL 5 BASIC6.2□□□□□ -1.422e-44■■□□□ 13.4
NIP7Q9Y221 ALB-202ENST00000401494 1659 ntTSL 5 BASIC6.04□□□□□ -1.442e-44■■□□□ 13.4
NIP7Q9Y221 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.512e-44■■□□□ 13.4
NIP7Q9Y221 ALB-206ENST00000484992 693 ntTSL 23.06□□□□□ -1.922e-44■■□□□ 13.4
NIP7Q9Y221 RPS3-205ENST00000525933 1307 ntTSL 514.06□□□□□ -0.164e-58■■□□□ 13.4
NIP7Q9Y221 RPS3-204ENST00000525690 421 ntTSL 312.49□□□□□ -0.414e-58■■□□□ 13.4
NIP7Q9Y221 RPS3-215ENST00000530170 531 ntTSL 510.59□□□□□ -0.714e-58■■□□□ 13.4
NIP7Q9Y221 SNORD15B-201ENST00000384714 146 ntBASIC3.94□□□□□ -1.784e-58■■□□□ 13.4
NIP7Q9Y221 SNX5-206ENST00000469704 696 ntTSL 334.78■■■■□ 3.161e-323■■□□□ 13.3
NIP7Q9Y221 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.071e-323■■□□□ 13.3
NIP7Q9Y221 SNX5-204ENST00000431277 840 ntTSL 520.74■□□□□ 0.911e-323■■□□□ 13.3
NIP7Q9Y221 SNX5-203ENST00000419004 778 ntTSL 519.65■□□□□ 0.741e-323■■□□□ 13.3
NIP7Q9Y221 SNX5-214ENST00000490175 2025 ntTSL 1 (best)19.08■□□□□ 0.641e-323■■□□□ 13.3
NIP7Q9Y221 OVOL2-204ENST00000486776 550 ntTSL 318.37■□□□□ 0.531e-323■■□□□ 13.3
NIP7Q9Y221 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.531e-323■■□□□ 13.3
NIP7Q9Y221 SNORD17-201ENST00000390930 237 ntBASIC4.5□□□□□ -1.691e-323■■□□□ 13.3
NIP7Q9Y221 SNX5-207ENST00000474883 695 ntTSL 54.36□□□□□ -1.711e-323■■□□□ 13.3
NIP7Q9Y221 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.561e-8■■□□□ 13
NIP7Q9Y221 LRP5-206ENST00000529993 5103 ntTSL 1 (best)17.25■□□□□ 0.351e-8■■□□□ 13
NIP7Q9Y221 TAF1D-207ENST00000527169 1127 ntTSL 522.47■■□□□ 1.192e-50■■□□□ 13
NIP7Q9Y221 TAF1D-205ENST00000526015 1735 ntTSL 1 (best)21.12■□□□□ 0.972e-50■■□□□ 13
NIP7Q9Y221 TAF1D-201ENST00000323981 2540 ntTSL 215.54■□□□□ 0.082e-50■■□□□ 13
NIP7Q9Y221 TAF1D-204ENST00000525928 1710 ntTSL 29.16□□□□□ -0.942e-50■■□□□ 13
NIP7Q9Y221 TAF1D-222ENST00000546088 1728 ntTSL 38.26□□□□□ -1.092e-50■■□□□ 13
NIP7Q9Y221 TAF1D-210ENST00000529435 1011 ntTSL 57.25□□□□□ -1.252e-50■■□□□ 13
NIP7Q9Y221 TAF1D-215ENST00000530769 4358 ntTSL 25.93□□□□□ -1.462e-50■■□□□ 13
NIP7Q9Y221 TAF1D-214ENST00000530089 1429 ntTSL 33.83□□□□□ -1.82e-50■■□□□ 13
NIP7Q9Y221 TAF1D-212ENST00000529794 1123 ntTSL 23.51□□□□□ -1.852e-50■■□□□ 13
Retrieved 100 of 1,619 protein–RNA pairs in 44.7 ms