RNA–Protein interactions for RNA: ENST00000513048.5

DHFR-206, Transcript of dihydrofolate reductase, humanhuman

TSL 1 (best)

Gene DHFR, Length 994 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DHFR-206ENST00000513048 NISCHQ9Y2I1 1504 aa21.8■■□□□ 1.08
DHFR-206ENST00000513048 AEBP2Q6ZN18 517 aaPredicted RBP21.5■■□□□ 1.03
DHFR-206ENST00000513048 CHIC1Q5VXU3 224 aa20.52■□□□□ 0.88
DHFR-206ENST00000513048 CCDC180Q9P1Z9 1646 aa19.12■□□□□ 0.65
DHFR-206ENST00000513048 SENP3Q9H4L4 574 aaPredicted RBP18.47■□□□□ 0.55
DHFR-206ENST00000513048 ZCCHC6Q5VYS8 1495 aaKnown RBP18.28■□□□□ 0.52
DHFR-206ENST00000513048 PHF23Q9BUL5 403 aaPredicted RBP18.17■□□□□ 0.5
DHFR-206ENST00000513048 ABCC9O60706 1549 aa18.16■□□□□ 0.5
DHFR-206ENST00000513048 DCAF1Q9Y4B6 1507 aa18.07■□□□□ 0.48
DHFR-206ENST00000513048 MYO15BQ96JP2 1530 aa17.93■□□□□ 0.46
DHFR-206ENST00000513048 DCAF8L2P0C7V8 631 aa17.88■□□□□ 0.45
DHFR-206ENST00000513048 NACADO15069 1562 aa17.83■□□□□ 0.44
DHFR-206ENST00000513048 RB1CC1Q8TDY2 1594 aa17.7■□□□□ 0.42
DHFR-206ENST00000513048 SHROOM4Q9ULL8 1493 aa17.54■□□□□ 0.4
DHFR-206ENST00000513048 SCRIBQ14160 1630 aa17.49■□□□□ 0.39
DHFR-206ENST00000513048 UNC13AQ9UPW8 1703 aa17.38■□□□□ 0.37
DHFR-206ENST00000513048 BICRAQ9NZM4 1560 aa17.23■□□□□ 0.35
DHFR-206ENST00000513048 FOXD1Q16676 465 aa17.13■□□□□ 0.33
DHFR-206ENST00000513048 PABPN1Q86U42 306 aaKnown RBP eCLIP17.06■□□□□ 0.321e-6■■■■■ 27.9
DHFR-206ENST00000513048 CECR2Q9BXF3 1484 aa16.94■□□□□ 0.3
DHFR-206ENST00000513048 MROH2BQ7Z745 1585 aa16.83■□□□□ 0.28
DHFR-206ENST00000513048 RSF1Q96T23 1441 aaPredicted RBP16.83■□□□□ 0.28
DHFR-206ENST00000513048 BAZ1AQ9NRL2 1556 aaPredicted RBP16.83■□□□□ 0.28
DHFR-206ENST00000513048 SMARCA4P51532 1647 aa16.79■□□□□ 0.28
DHFR-206ENST00000513048 SUPT5HO00267 1087 aaKnown RBP16.75■□□□□ 0.27
DHFR-206ENST00000513048 EIF4G1Q04637 1599 aaKnown RBP16.68■□□□□ 0.26
DHFR-206ENST00000513048 WIZO95785 1651 aa16.67■□□□□ 0.26
DHFR-206ENST00000513048 PEG3Q9GZU2 1588 aa16.64■□□□□ 0.25
DHFR-206ENST00000513048 ATAD2BQ9ULI0 1458 aa16.56■□□□□ 0.24
DHFR-206ENST00000513048 SMARCA2P51531 1590 aa16.53■□□□□ 0.24
DHFR-206ENST00000513048 TOP2AP11388 1531 aaKnown RBP16.51■□□□□ 0.23
DHFR-206ENST00000513048 CC2D2AQ9P2K1 1620 aa16.47■□□□□ 0.23
DHFR-206ENST00000513048 NCAPD3P42695 1498 aa16.47■□□□□ 0.23
DHFR-206ENST00000513048 PLPPR3Q6T4P5 718 aa16.46■□□□□ 0.23
DHFR-206ENST00000513048 HMGXB3Q12766 1538 aa16.42■□□□□ 0.22
DHFR-206ENST00000513048 BAZ1BQ9UIG0 1483 aaKnown RBP16.42■□□□□ 0.22
DHFR-206ENST00000513048 CCDC88BA6NC98 1476 aa16.32■□□□□ 0.2
DHFR-206ENST00000513048 DNAJC5BQ9UF47 199 aa16.22■□□□□ 0.19
DHFR-206ENST00000513048 MSH5O43196 834 aa16.12■□□□□ 0.17
DHFR-206ENST00000513048 PIAS4Q8N2W9 510 aaPredicted RBP16.08■□□□□ 0.16
DHFR-206ENST00000513048 CFTRP13569 1480 aa16.03■□□□□ 0.16
DHFR-206ENST00000513048 CADPSQ9ULU8 1353 aa16■□□□□ 0.15
DHFR-206ENST00000513048 PPP6R1Q9UPN7 881 aa15.97■□□□□ 0.15
DHFR-206ENST00000513048 ADRA2BP18089 450 aa15.96■□□□□ 0.15
DHFR-206ENST00000513048 PRDM2Q13029 1718 aa15.96■□□□□ 0.15
DHFR-206ENST00000513048 LAMC3Q9Y6N6 1575 aa15.92■□□□□ 0.14
DHFR-206ENST00000513048 NESP48681 1621 aa15.91■□□□□ 0.14
DHFR-206ENST00000513048 ABCC8Q09428 1581 aa15.9■□□□□ 0.14
DHFR-206ENST00000513048 WRNQ14191 1432 aaPredicted RBP eCLIP15.82■□□□□ 0.12
DHFR-206ENST00000513048 FANCD2Q9BXW9 1451 aa15.81■□□□□ 0.12
DHFR-206ENST00000513048 SYNJ1O43426 1573 aa15.79■□□□□ 0.12
DHFR-206ENST00000513048 TRIM41Q8WV44 630 aa15.78■□□□□ 0.12
DHFR-206ENST00000513048 PDS5BQ9NTI5 1447 aa15.76■□□□□ 0.11
DHFR-206ENST00000513048 CUX1P39880 1505 aa15.75■□□□□ 0.11
DHFR-206ENST00000513048 TOP2BQ02880 1626 aa15.75■□□□□ 0.11
DHFR-206ENST00000513048 BIVM-ERCC5R4GMW8 1640 aa15.75■□□□□ 0.11
DHFR-206ENST00000513048 KIF21AQ7Z4S6 1674 aa15.73■□□□□ 0.11
DHFR-206ENST00000513048 CEP164Q9UPV0 1460 aa15.71■□□□□ 0.11
DHFR-206ENST00000513048 DNMBPQ6XZF7 1577 aa15.66■□□□□ 0.1
DHFR-206ENST00000513048 POTEDQ86YR6 584 aa15.66■□□□□ 0.1
DHFR-206ENST00000513048 URB2Q14146 1524 aaKnown RBP15.66■□□□□ 0.1
DHFR-206ENST00000513048 TOPBP1Q92547 1522 aa15.64■□□□□ 0.09
DHFR-206ENST00000513048 MRC2Q9UBG0 1479 aa15.6■□□□□ 0.09
DHFR-206ENST00000513048 FGD5Q6ZNL6 1462 aa15.59■□□□□ 0.09
DHFR-206ENST00000513048 SOGA1O94964 1423 aa15.57■□□□□ 0.08
DHFR-206ENST00000513048 THOC2Q8NI27 1593 aaKnown RBP15.55■□□□□ 0.08
DHFR-206ENST00000513048 WDR62O43379 1518 aa15.55■□□□□ 0.08
DHFR-206ENST00000513048 ERCC6Q03468 1493 aa15.55■□□□□ 0.08
DHFR-206ENST00000513048 POLA1P09884 1462 aaPredicted RBP15.54■□□□□ 0.08
DHFR-206ENST00000513048 RUSC2Q8N2Y8 1516 aa15.53■□□□□ 0.08
DHFR-206ENST00000513048 EEA1Q15075 1411 aa15.5■□□□□ 0.07
DHFR-206ENST00000513048 RAD54L2Q9Y4B4 1467 aa15.48■□□□□ 0.07
DHFR-206ENST00000513048 ABCA10Q8WWZ4 1543 aa15.47■□□□□ 0.07
DHFR-206ENST00000513048 WDR97A6NE52 1622 aa15.46■□□□□ 0.07
DHFR-206ENST00000513048 FAM9AQ8IZU1 332 aaPredicted RBP15.46■□□□□ 0.07
DHFR-206ENST00000513048 CUX2O14529 1486 aa15.46■□□□□ 0.06
DHFR-206ENST00000513048 TARBP1Q13395 1621 aaKnown RBP15.45■□□□□ 0.06
DHFR-206ENST00000513048 KIF27Q86VH2 1401 aa15.42■□□□□ 0.06
DHFR-206ENST00000513048 CSRNP3Q8WYN3 585 aa15.4■□□□□ 0.06
DHFR-206ENST00000513048 IFT140Q96RY7 1462 aa15.38■□□□□ 0.05
DHFR-206ENST00000513048 ABCA5Q8WWZ7 1642 aa15.37■□□□□ 0.05
DHFR-206ENST00000513048 LOC105371045A0A1W2PR82 267 aa15.36■□□□□ 0.05
DHFR-206ENST00000513048 KIF21BO75037 1637 aa15.34■□□□□ 0.05
DHFR-206ENST00000513048 IGF1RP08069 1367 aa15.34■□□□□ 0.05
DHFR-206ENST00000513048 PRXQ9BXM0 1461 aa15.33■□□□□ 0.04
DHFR-206ENST00000513048 TDRD9Q8NDG6 1382 aaKnown RBP15.32■□□□□ 0.04
DHFR-206ENST00000513048 GAPVD1Q14C86 1478 aa15.3■□□□□ 0.04
DHFR-206ENST00000513048 ZNF608Q9ULD9 1512 aaPredicted RBP15.3■□□□□ 0.04
DHFR-206ENST00000513048 ERICH3Q5RHP9 1530 aa15.27■□□□□ 0.03
DHFR-206ENST00000513048 AQRO60306 1485 aaKnown RBP eCLIP15.27■□□□□ 0.032e-19■■■□□ 14.9
DHFR-206ENST00000513048 GOLGA3Q08378 1498 aa15.27■□□□□ 0.03
DHFR-206ENST00000513048 RAPGEF2Q9Y4G8 1499 aa15.26■□□□□ 0.03
DHFR-206ENST00000513048 PBRM1Q86U86 1689 aa15.25■□□□□ 0.03
DHFR-206ENST00000513048 EIF4G3O43432 1585 aaKnown RBP15.24■□□□□ 0.03
DHFR-206ENST00000513048 CUL7Q14999 1698 aa15.23■□□□□ 0.03
DHFR-206ENST00000513048 CARMIL1Q5VZK9 1371 aa15.23■□□□□ 0.03
DHFR-206ENST00000513048 GRIN2BQ13224 1484 aa15.21■□□□□ 0.03
DHFR-206ENST00000513048 EHMT2Q96KQ7 1210 aa15.21■□□□□ 0.03
DHFR-206ENST00000513048 TNIKQ9UKE5 1360 aa15.2■□□□□ 0.02
DHFR-206ENST00000513048 ADAMTS12P58397 1594 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms