Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
SMC1BQ8NDV3 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC30.86■■■□□ 2.53
SMC1BQ8NDV3 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC30.86■■■□□ 2.53
SMC1BQ8NDV3 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
SMC1BQ8NDV3 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC30.85■■■□□ 2.53
SMC1BQ8NDV3 AC133552.2-201ENST00000619106 1032 ntBASIC30.85■■■□□ 2.53
SMC1BQ8NDV3 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC30.85■■■□□ 2.53
SMC1BQ8NDV3 KRT8P33-201ENST00000508125 1423 ntBASIC30.84■■■□□ 2.53
SMC1BQ8NDV3 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
SMC1BQ8NDV3 MIR219A2-201ENST00000608502 1504 ntBASIC30.83■■■□□ 2.53
SMC1BQ8NDV3 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
SMC1BQ8NDV3 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
SMC1BQ8NDV3 OR2A1-AS1-204ENST00000470435 602 ntBASIC30.83■■■□□ 2.53
SMC1BQ8NDV3 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC30.83■■■□□ 2.53
SMC1BQ8NDV3 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC30.83■■■□□ 2.53
SMC1BQ8NDV3 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC30.83■■■□□ 2.53
SMC1BQ8NDV3 AC009831.1-201ENST00000580420 1582 ntBASIC30.83■■■□□ 2.53
SMC1BQ8NDV3 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
SMC1BQ8NDV3 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
SMC1BQ8NDV3 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC30.82■■■□□ 2.52
SMC1BQ8NDV3 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
SMC1BQ8NDV3 AC007029.1-201ENST00000604183 313 ntBASIC30.82■■■□□ 2.52
SMC1BQ8NDV3 BHLHE23-202ENST00000612929 1109 ntBASIC30.82■■■□□ 2.52
SMC1BQ8NDV3 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC30.81■■■□□ 2.52
SMC1BQ8NDV3 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC30.81■■■□□ 2.52
SMC1BQ8NDV3 AC126177.7-201ENST00000547904 679 ntBASIC30.81■■■□□ 2.52
SMC1BQ8NDV3 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC30.81■■■□□ 2.52
SMC1BQ8NDV3 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
SMC1BQ8NDV3 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
SMC1BQ8NDV3 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
SMC1BQ8NDV3 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC30.79■■■□□ 2.52
SMC1BQ8NDV3 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
SMC1BQ8NDV3 AC010980.1-201ENST00000587192 1142 ntBASIC30.79■■■□□ 2.52
SMC1BQ8NDV3 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
SMC1BQ8NDV3 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC30.78■■■□□ 2.52
SMC1BQ8NDV3 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
SMC1BQ8NDV3 MOB2-207ENST00000614710 705 ntTSL 5 BASIC30.78■■■□□ 2.52
SMC1BQ8NDV3 AC074183.2-201ENST00000623112 922 ntBASIC30.78■■■□□ 2.52
SMC1BQ8NDV3 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC30.78■■■□□ 2.52
SMC1BQ8NDV3 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC30.77■■■□□ 2.52
SMC1BQ8NDV3 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC30.76■■■□□ 2.51
SMC1BQ8NDV3 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
SMC1BQ8NDV3 AC110285.7-201ENST00000624417 1536 ntBASIC30.75■■■□□ 2.51
SMC1BQ8NDV3 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
SMC1BQ8NDV3 AL356441.2-201ENST00000443009 864 ntBASIC30.75■■■□□ 2.51
SMC1BQ8NDV3 AC025884.2-201ENST00000553429 711 ntBASIC30.75■■■□□ 2.51
SMC1BQ8NDV3 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
SMC1BQ8NDV3 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
SMC1BQ8NDV3 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
SMC1BQ8NDV3 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC30.74■■■□□ 2.51
SMC1BQ8NDV3 YBX1P4-201ENST00000392794 808 ntBASIC30.74■■■□□ 2.51
SMC1BQ8NDV3 RPS2-210ENST00000530225 765 ntTSL 2 BASIC30.73■■■□□ 2.51
SMC1BQ8NDV3 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC30.73■■■□□ 2.51
SMC1BQ8NDV3 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC30.72■■■□□ 2.51
SMC1BQ8NDV3 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC30.72■■■□□ 2.51
SMC1BQ8NDV3 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC30.72■■■□□ 2.51
SMC1BQ8NDV3 REST-210ENST00000638187 1334 ntTSL 5 BASIC30.72■■■□□ 2.51
SMC1BQ8NDV3 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC30.71■■■□□ 2.51
SMC1BQ8NDV3 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
SMC1BQ8NDV3 AL157400.5-201ENST00000507624 621 ntBASIC30.7■■■□□ 2.51
SMC1BQ8NDV3 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC30.7■■■□□ 2.51
SMC1BQ8NDV3 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC30.7■■■□□ 2.51
SMC1BQ8NDV3 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC30.7■■■□□ 2.51
SMC1BQ8NDV3 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
SMC1BQ8NDV3 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
SMC1BQ8NDV3 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
SMC1BQ8NDV3 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
SMC1BQ8NDV3 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
SMC1BQ8NDV3 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC30.68■■■□□ 2.5
SMC1BQ8NDV3 LSM7-203ENST00000585409 512 ntTSL 2 BASIC30.68■■■□□ 2.5
SMC1BQ8NDV3 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC30.68■■■□□ 2.5
SMC1BQ8NDV3 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC30.67■■■□□ 2.5
SMC1BQ8NDV3 WHAMMP2-203ENST00000563942 1603 ntBASIC30.66■■■□□ 2.5
SMC1BQ8NDV3 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
SMC1BQ8NDV3 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
SMC1BQ8NDV3 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC30.65■■■□□ 2.5
SMC1BQ8NDV3 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC30.65■■■□□ 2.5
SMC1BQ8NDV3 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC30.65■■■□□ 2.5
SMC1BQ8NDV3 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
SMC1BQ8NDV3 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC30.64■■■□□ 2.5
SMC1BQ8NDV3 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
SMC1BQ8NDV3 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC30.64■■■□□ 2.5
SMC1BQ8NDV3 DUX4L9-201ENST00000449051 1259 ntBASIC30.64■■■□□ 2.5
SMC1BQ8NDV3 AC103834.1-201ENST00000520383 144 ntBASIC30.64■■■□□ 2.5
SMC1BQ8NDV3 AC135983.2-203ENST00000454486 1613 ntBASIC30.64■■■□□ 2.5
SMC1BQ8NDV3 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
SMC1BQ8NDV3 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC30.63■■■□□ 2.49
SMC1BQ8NDV3 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC30.63■■■□□ 2.49
SMC1BQ8NDV3 AC008406.3-201ENST00000620001 1374 ntBASIC30.63■■■□□ 2.49
SMC1BQ8NDV3 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC30.62■■■□□ 2.49
SMC1BQ8NDV3 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
SMC1BQ8NDV3 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
SMC1BQ8NDV3 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
SMC1BQ8NDV3 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC30.61■■■□□ 2.49
SMC1BQ8NDV3 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
SMC1BQ8NDV3 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC30.61■■■□□ 2.49
SMC1BQ8NDV3 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC30.6■■■□□ 2.49
SMC1BQ8NDV3 BEX3-202ENST00000372634 753 ntTSL 2 BASIC30.6■■■□□ 2.49
SMC1BQ8NDV3 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC30.6■■■□□ 2.49
SMC1BQ8NDV3 MED25-210ENST00000612854 801 ntTSL 5 BASIC30.6■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 158.6 ms