Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC16.26■□□□□ 0.19
HSPG2P98160 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
HSPG2P98160 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC16.25■□□□□ 0.19
HSPG2P98160 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC16.25■□□□□ 0.19
HSPG2P98160 AC103834.1-201ENST00000520383 144 ntBASIC16.25■□□□□ 0.19
HSPG2P98160 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HSPG2P98160 KRT8P33-201ENST00000508125 1423 ntBASIC16.24■□□□□ 0.19
HSPG2P98160 MED25-210ENST00000612854 801 ntTSL 5 BASIC16.24■□□□□ 0.19
HSPG2P98160 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HSPG2P98160 MED25-214ENST00000622402 642 ntTSL 5 BASIC16.24■□□□□ 0.19
HSPG2P98160 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC16.24■□□□□ 0.19
HSPG2P98160 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC16.24■□□□□ 0.19
HSPG2P98160 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
HSPG2P98160 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC16.23■□□□□ 0.19
HSPG2P98160 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HSPG2P98160 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HSPG2P98160 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC16.23■□□□□ 0.19
HSPG2P98160 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HSPG2P98160 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HSPG2P98160 HES6-204ENST00000409182 863 ntTSL 2 BASIC16.23■□□□□ 0.19
HSPG2P98160 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC16.23■□□□□ 0.19
HSPG2P98160 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HSPG2P98160 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HSPG2P98160 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HSPG2P98160 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HSPG2P98160 WHAMMP2-203ENST00000563942 1603 ntBASIC16.22■□□□□ 0.19
HSPG2P98160 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HSPG2P98160 AC010980.1-201ENST00000587192 1142 ntBASIC16.22■□□□□ 0.19
HSPG2P98160 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC16.22■□□□□ 0.19
HSPG2P98160 MOB2-207ENST00000614710 705 ntTSL 5 BASIC16.22■□□□□ 0.19
HSPG2P98160 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
HSPG2P98160 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
HSPG2P98160 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HSPG2P98160 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
HSPG2P98160 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HSPG2P98160 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
HSPG2P98160 LSM7-203ENST00000585409 512 ntTSL 2 BASIC16.21■□□□□ 0.18
HSPG2P98160 AC007029.1-201ENST00000604183 313 ntBASIC16.21■□□□□ 0.18
HSPG2P98160 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
HSPG2P98160 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC16.2■□□□□ 0.18
HSPG2P98160 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC16.2■□□□□ 0.18
HSPG2P98160 AC009831.1-201ENST00000580420 1582 ntBASIC16.2■□□□□ 0.18
HSPG2P98160 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC16.19■□□□□ 0.18
HSPG2P98160 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
HSPG2P98160 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC16.19■□□□□ 0.18
HSPG2P98160 AL356441.2-201ENST00000443009 864 ntBASIC16.19■□□□□ 0.18
HSPG2P98160 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC16.19■□□□□ 0.18
HSPG2P98160 AC025884.2-201ENST00000553429 711 ntBASIC16.19■□□□□ 0.18
HSPG2P98160 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HSPG2P98160 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HSPG2P98160 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC16.18■□□□□ 0.18
HSPG2P98160 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HSPG2P98160 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HSPG2P98160 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HSPG2P98160 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
HSPG2P98160 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HSPG2P98160 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HSPG2P98160 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
HSPG2P98160 RPS2-210ENST00000530225 765 ntTSL 2 BASIC16.17■□□□□ 0.18
HSPG2P98160 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC16.17■□□□□ 0.18
HSPG2P98160 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HSPG2P98160 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HSPG2P98160 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HSPG2P98160 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HSPG2P98160 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC16.16■□□□□ 0.18
HSPG2P98160 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
HSPG2P98160 MIR219A2-201ENST00000608502 1504 ntBASIC16.16■□□□□ 0.18
HSPG2P98160 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HSPG2P98160 DUX4L9-201ENST00000449051 1259 ntBASIC16.16■□□□□ 0.18
HSPG2P98160 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HSPG2P98160 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC16.16■□□□□ 0.18
HSPG2P98160 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HSPG2P98160 SPCS2P3-201ENST00000500401 656 ntBASIC16.15■□□□□ 0.18
HSPG2P98160 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
HSPG2P98160 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC16.15■□□□□ 0.18
HSPG2P98160 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC16.15■□□□□ 0.18
HSPG2P98160 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC16.15■□□□□ 0.18
HSPG2P98160 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
HSPG2P98160 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HSPG2P98160 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HSPG2P98160 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
HSPG2P98160 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
HSPG2P98160 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HSPG2P98160 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC16.14■□□□□ 0.17
HSPG2P98160 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC16.14■□□□□ 0.17
HSPG2P98160 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HSPG2P98160 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HSPG2P98160 AC110285.7-201ENST00000624417 1536 ntBASIC16.13■□□□□ 0.17
HSPG2P98160 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HSPG2P98160 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC16.13■□□□□ 0.17
HSPG2P98160 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HSPG2P98160 ECEL1P2-201ENST00000461596 1295 ntBASIC16.13■□□□□ 0.17
HSPG2P98160 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC16.13■□□□□ 0.17
HSPG2P98160 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
HSPG2P98160 BEX3-202ENST00000372634 753 ntTSL 2 BASIC16.12■□□□□ 0.17
HSPG2P98160 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
HSPG2P98160 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
HSPG2P98160 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
HSPG2P98160 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC16.12■□□□□ 0.17
HSPG2P98160 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 130.2 ms