Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 LINC01971-201ENST00000617888 1048 ntBASIC26.59■■□□□ 1.85
PTPN9P43378 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
PTPN9P43378 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
PTPN9P43378 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC26.58■■□□□ 1.85
PTPN9P43378 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
PTPN9P43378 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC26.58■■□□□ 1.85
PTPN9P43378 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
PTPN9P43378 ZNRF2P2-203ENST00000454624 420 ntBASIC26.57■■□□□ 1.84
PTPN9P43378 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC26.57■■□□□ 1.84
PTPN9P43378 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC26.55■■□□□ 1.84
PTPN9P43378 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
PTPN9P43378 ABHD17AP4-201ENST00000411545 909 ntBASIC26.54■■□□□ 1.84
PTPN9P43378 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC26.53■■□□□ 1.84
PTPN9P43378 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
PTPN9P43378 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC26.52■■□□□ 1.84
PTPN9P43378 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
PTPN9P43378 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PTPN9P43378 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
PTPN9P43378 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
PTPN9P43378 AC110285.7-201ENST00000624417 1536 ntBASIC26.5■■□□□ 1.83
PTPN9P43378 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.5■■□□□ 1.83
PTPN9P43378 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC26.49■■□□□ 1.83
PTPN9P43378 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PTPN9P43378 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PTPN9P43378 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PTPN9P43378 CHML-204ENST00000638121 920 ntTSL 2 BASIC26.48■■□□□ 1.83
PTPN9P43378 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
PTPN9P43378 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PTPN9P43378 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
PTPN9P43378 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
PTPN9P43378 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
PTPN9P43378 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC26.47■■□□□ 1.83
PTPN9P43378 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
PTPN9P43378 PEX7-203ENST00000541292 945 ntTSL 5 BASIC26.47■■□□□ 1.83
PTPN9P43378 DUX4L11-201ENST00000611504 1267 ntBASIC26.47■■□□□ 1.83
PTPN9P43378 DUX4L12-201ENST00000614593 1267 ntBASIC26.47■■□□□ 1.83
PTPN9P43378 DUX4L14-201ENST00000621227 1267 ntBASIC26.47■■□□□ 1.83
PTPN9P43378 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
PTPN9P43378 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC26.46■■□□□ 1.83
PTPN9P43378 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
PTPN9P43378 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
PTPN9P43378 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC26.46■■□□□ 1.83
PTPN9P43378 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
PTPN9P43378 DUX4L13-201ENST00000554103 1267 ntBASIC26.46■■□□□ 1.83
PTPN9P43378 DUX4L15-201ENST00000611059 1267 ntBASIC26.46■■□□□ 1.83
PTPN9P43378 DUX4L23-201ENST00000615195 1269 ntBASIC26.46■■□□□ 1.83
PTPN9P43378 DUX4L24-201ENST00000617576 1269 ntBASIC26.46■■□□□ 1.83
PTPN9P43378 DUX4L22-201ENST00000618238 1269 ntBASIC26.46■■□□□ 1.83
PTPN9P43378 DUX4L20-201ENST00000619712 1269 ntBASIC26.46■■□□□ 1.83
PTPN9P43378 DUX4L21-201ENST00000622058 1269 ntBASIC26.46■■□□□ 1.83
PTPN9P43378 DUX4L10-201ENST00000622460 1267 ntBASIC26.46■■□□□ 1.83
PTPN9P43378 DUX4L25-201ENST00000624915 1269 ntBASIC26.46■■□□□ 1.83
PTPN9P43378 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
PTPN9P43378 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC26.45■■□□□ 1.82
PTPN9P43378 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
PTPN9P43378 AC018358.1-201ENST00000631079 1402 ntBASIC26.44■■□□□ 1.82
PTPN9P43378 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
PTPN9P43378 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
PTPN9P43378 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC26.42■■□□□ 1.82
PTPN9P43378 BX255925.1-201ENST00000566954 1854 ntBASIC26.42■■□□□ 1.82
PTPN9P43378 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
PTPN9P43378 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.42■■□□□ 1.82
PTPN9P43378 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
PTPN9P43378 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC26.42■■□□□ 1.82
PTPN9P43378 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC26.42■■□□□ 1.82
PTPN9P43378 LINC01003-201ENST00000564834 1764 ntBASIC26.41■■□□□ 1.82
PTPN9P43378 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
PTPN9P43378 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC26.41■■□□□ 1.82
PTPN9P43378 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PTPN9P43378 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
PTPN9P43378 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
PTPN9P43378 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
PTPN9P43378 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC26.39■■□□□ 1.82
PTPN9P43378 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC26.38■■□□□ 1.81
PTPN9P43378 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC26.38■■□□□ 1.81
PTPN9P43378 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
PTPN9P43378 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
PTPN9P43378 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
PTPN9P43378 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
PTPN9P43378 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC26.37■■□□□ 1.81
PTPN9P43378 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
PTPN9P43378 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC26.37■■□□□ 1.81
PTPN9P43378 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
PTPN9P43378 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PTPN9P43378 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
PTPN9P43378 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
PTPN9P43378 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
PTPN9P43378 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
PTPN9P43378 RNF166-209ENST00000567844 633 ntTSL 5 BASIC26.36■■□□□ 1.81
PTPN9P43378 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PTPN9P43378 AGPS-202ENST00000409888 815 ntTSL 4 BASIC26.35■■□□□ 1.81
PTPN9P43378 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PTPN9P43378 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PTPN9P43378 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
PTPN9P43378 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PTPN9P43378 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PTPN9P43378 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC26.33■■□□□ 1.81
PTPN9P43378 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC26.33■■□□□ 1.81
PTPN9P43378 RPS2-210ENST00000530225 765 ntTSL 2 BASIC26.33■■□□□ 1.81
PTPN9P43378 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms