Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 AL356441.2-201ENST00000443009 864 ntBASIC34.56■■■■□ 3.12
RXRBP28702 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC34.56■■■■□ 3.12
RXRBP28702 AC010980.1-201ENST00000587192 1142 ntBASIC34.56■■■■□ 3.12
RXRBP28702 BHLHE23-202ENST00000612929 1109 ntBASIC34.56■■■■□ 3.12
RXRBP28702 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
RXRBP28702 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC34.55■■■■□ 3.12
RXRBP28702 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC34.55■■■■□ 3.12
RXRBP28702 LSM7-203ENST00000585409 512 ntTSL 2 BASIC34.55■■■■□ 3.12
RXRBP28702 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC34.55■■■■□ 3.12
RXRBP28702 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC34.55■■■■□ 3.12
RXRBP28702 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC34.55■■■■□ 3.12
RXRBP28702 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC34.54■■■■□ 3.12
RXRBP28702 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC34.54■■■■□ 3.12
RXRBP28702 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
RXRBP28702 AC009831.1-201ENST00000580420 1582 ntBASIC34.53■■■■□ 3.12
RXRBP28702 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
RXRBP28702 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
RXRBP28702 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC34.53■■■■□ 3.12
RXRBP28702 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC34.53■■■■□ 3.12
RXRBP28702 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
RXRBP28702 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC34.52■■■■□ 3.12
RXRBP28702 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC34.52■■■■□ 3.12
RXRBP28702 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC34.51■■■■□ 3.12
RXRBP28702 AC007029.1-201ENST00000604183 313 ntBASIC34.49■■■■□ 3.11
RXRBP28702 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC34.49■■■■□ 3.11
RXRBP28702 AC074183.2-201ENST00000623112 922 ntBASIC34.48■■■■□ 3.11
RXRBP28702 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC34.48■■■■□ 3.11
RXRBP28702 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
RXRBP28702 MIR219A2-201ENST00000608502 1504 ntBASIC34.47■■■■□ 3.11
RXRBP28702 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC34.47■■■■□ 3.11
RXRBP28702 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC34.47■■■■□ 3.11
RXRBP28702 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC34.47■■■■□ 3.11
RXRBP28702 YBX1P4-201ENST00000392794 808 ntBASIC34.46■■■■□ 3.11
RXRBP28702 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC34.46■■■■□ 3.11
RXRBP28702 MOB2-207ENST00000614710 705 ntTSL 5 BASIC34.46■■■■□ 3.11
RXRBP28702 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC34.46■■■■□ 3.11
RXRBP28702 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC34.46■■■■□ 3.11
RXRBP28702 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC34.46■■■■□ 3.11
RXRBP28702 AC008406.3-201ENST00000620001 1374 ntBASIC34.45■■■■□ 3.11
RXRBP28702 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC34.44■■■■□ 3.1
RXRBP28702 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC34.44■■■■□ 3.1
RXRBP28702 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC34.43■■■■□ 3.1
RXRBP28702 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC34.43■■■■□ 3.1
RXRBP28702 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC34.42■■■■□ 3.1
RXRBP28702 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC34.42■■■■□ 3.1
RXRBP28702 AC103834.1-201ENST00000520383 144 ntBASIC34.42■■■■□ 3.1
RXRBP28702 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC34.4■■■■□ 3.1
RXRBP28702 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC34.4■■■■□ 3.1
RXRBP28702 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC34.4■■■■□ 3.1
RXRBP28702 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC34.38■■■■□ 3.09
RXRBP28702 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC34.38■■■■□ 3.09
RXRBP28702 AC126177.7-201ENST00000547904 679 ntBASIC34.38■■■■□ 3.09
RXRBP28702 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC34.37■■■■□ 3.09
RXRBP28702 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC34.37■■■■□ 3.09
RXRBP28702 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC34.37■■■■□ 3.09
RXRBP28702 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC34.37■■■■□ 3.09
RXRBP28702 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC34.37■■■■□ 3.09
RXRBP28702 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC34.36■■■■□ 3.09
RXRBP28702 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC34.36■■■■□ 3.09
RXRBP28702 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC34.35■■■■□ 3.09
RXRBP28702 AL157400.5-201ENST00000507624 621 ntBASIC34.35■■■■□ 3.09
RXRBP28702 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
RXRBP28702 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
RXRBP28702 AC110285.7-201ENST00000624417 1536 ntBASIC34.35■■■■□ 3.09
RXRBP28702 DUX4L9-201ENST00000449051 1259 ntBASIC34.34■■■■□ 3.09
RXRBP28702 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC34.33■■■■□ 3.09
RXRBP28702 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC34.33■■■■□ 3.09
RXRBP28702 BEX3-202ENST00000372634 753 ntTSL 2 BASIC34.33■■■■□ 3.09
RXRBP28702 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC34.33■■■■□ 3.09
RXRBP28702 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC34.33■■■■□ 3.09
RXRBP28702 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC34.33■■■■□ 3.09
RXRBP28702 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC34.32■■■■□ 3.08
RXRBP28702 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC34.32■■■■□ 3.08
RXRBP28702 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC34.32■■■■□ 3.08
RXRBP28702 REST-210ENST00000638187 1334 ntTSL 5 BASIC34.31■■■■□ 3.08
RXRBP28702 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC34.31■■■■□ 3.08
RXRBP28702 RPS2-210ENST00000530225 765 ntTSL 2 BASIC34.31■■■■□ 3.08
RXRBP28702 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
RXRBP28702 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC34.31■■■■□ 3.08
RXRBP28702 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
RXRBP28702 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC34.29■■■■□ 3.08
RXRBP28702 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC34.29■■■■□ 3.08
RXRBP28702 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC34.29■■■■□ 3.08
RXRBP28702 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC34.28■■■■□ 3.08
RXRBP28702 MIR638-201ENST00000385237 100 ntBASIC34.27■■■■□ 3.08
RXRBP28702 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC34.27■■■■□ 3.08
RXRBP28702 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC34.26■■■■□ 3.08
RXRBP28702 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC34.26■■■■□ 3.07
RXRBP28702 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC34.26■■■■□ 3.07
RXRBP28702 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC34.25■■■■□ 3.07
RXRBP28702 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
RXRBP28702 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC34.25■■■■□ 3.07
RXRBP28702 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
RXRBP28702 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC34.25■■■■□ 3.07
RXRBP28702 MED25-210ENST00000612854 801 ntTSL 5 BASIC34.25■■■■□ 3.07
RXRBP28702 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC34.25■■■■□ 3.07
RXRBP28702 MED25-214ENST00000622402 642 ntTSL 5 BASIC34.25■■■■□ 3.07
RXRBP28702 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC34.24■■■■□ 3.07
RXRBP28702 WHAMMP2-203ENST00000563942 1603 ntBASIC34.24■■■■□ 3.07
RXRBP28702 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC34.24■■■■□ 3.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms