Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 DUX4L14-201ENST00000621227 1267 ntBASIC28.32■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC28.31■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC28.31■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC28.29■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC28.29■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 CHML-204ENST00000638121 920 ntTSL 2 BASIC28.29■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC28.28■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 AC142086.6-201ENST00000621154 1765 ntBASIC28.28■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC28.27■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 AC110285.7-201ENST00000624417 1536 ntBASIC28.27■■■□□ 2.12
NPHP3-ACAD11A0A0J9YXS1 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC28.26■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC28.26■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 MIR7108-201ENST00000614319 87 ntBASIC28.26■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC28.26■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC28.25■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DUX4L13-201ENST00000554103 1267 ntBASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 RNF166-209ENST00000567844 633 ntTSL 5 BASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DUX4L15-201ENST00000611059 1267 ntBASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DUX4L23-201ENST00000615195 1269 ntBASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DUX4L24-201ENST00000617576 1269 ntBASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DUX4L22-201ENST00000618238 1269 ntBASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DUX4L20-201ENST00000619712 1269 ntBASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DUX4L21-201ENST00000622058 1269 ntBASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DUX4L10-201ENST00000622460 1267 ntBASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DUX4L25-201ENST00000624915 1269 ntBASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC28.24■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 AP002414.2-202ENST00000590929 1450 ntBASIC28.22■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 PROC-203ENST00000409048 1586 ntTSL 5 BASIC28.21■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
NPHP3-ACAD11A0A0J9YXS1 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC28.2■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 PVT1-219ENST00000523427 938 ntTSL 3 BASIC28.2■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC28.2■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC28.2■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 PEX7-203ENST00000541292 945 ntTSL 5 BASIC28.18■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC28.17■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 CR559946.2-201ENST00000623684 991 ntBASIC28.17■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC28.16■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC28.16■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC28.15■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC28.15■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC28.14■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC28.14■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC28.14■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 CHST11-202ENST00000546689 756 ntTSL 2 BASIC28.14■■■□□ 2.1
NPHP3-ACAD11A0A0J9YXS1 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC28.12■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 MIR3648-2-201ENST00000581792 180 ntBASIC28.12■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 MIR3648-1-201ENST00000615959 180 ntBASIC28.12■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC28.12■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC28.12■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 HES6-205ENST00000409356 528 ntTSL 2 BASIC28.11■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 GDI1-215ENST00000630693 786 ntTSL 4 BASIC28.11■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC28.09■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC28.09■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 AC016575.1-201ENST00000607026 382 ntBASIC28.09■■■□□ 2.09
NPHP3-ACAD11A0A0J9YXS1 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms