Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV41A0A0B4J266 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV41A0A0B4J266 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV41A0A0B4J266 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC20.04■□□□□ 0.8
TRAV41A0A0B4J266 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRAV41A0A0B4J266 AC110285.7-201ENST00000624417 1536 ntBASIC20.03■□□□□ 0.8
TRAV41A0A0B4J266 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.03■□□□□ 0.8
TRAV41A0A0B4J266 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV41A0A0B4J266 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV41A0A0B4J266 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRAV41A0A0B4J266 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV41A0A0B4J266 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV41A0A0B4J266 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV41A0A0B4J266 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV41A0A0B4J266 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRAV41A0A0B4J266 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV41A0A0B4J266 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
TRAV41A0A0B4J266 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.01■□□□□ 0.79
TRAV41A0A0B4J266 CHST11-202ENST00000546689 756 ntTSL 2 BASIC20.01■□□□□ 0.79
TRAV41A0A0B4J266 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRAV41A0A0B4J266 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV41A0A0B4J266 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
TRAV41A0A0B4J266 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV41A0A0B4J266 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV41A0A0B4J266 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV41A0A0B4J266 MIR3648-2-201ENST00000581792 180 ntBASIC20■□□□□ 0.79
TRAV41A0A0B4J266 MIR3648-1-201ENST00000615959 180 ntBASIC20■□□□□ 0.79
TRAV41A0A0B4J266 CR559946.2-201ENST00000623684 991 ntBASIC20■□□□□ 0.79
TRAV41A0A0B4J266 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20■□□□□ 0.79
TRAV41A0A0B4J266 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV41A0A0B4J266 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRAV41A0A0B4J266 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV41A0A0B4J266 HES6-205ENST00000409356 528 ntTSL 2 BASIC19.99■□□□□ 0.79
TRAV41A0A0B4J266 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC19.99■□□□□ 0.79
TRAV41A0A0B4J266 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRAV41A0A0B4J266 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC19.98■□□□□ 0.79
TRAV41A0A0B4J266 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TRAV41A0A0B4J266 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
TRAV41A0A0B4J266 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC19.97■□□□□ 0.79
TRAV41A0A0B4J266 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV41A0A0B4J266 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRAV41A0A0B4J266 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
TRAV41A0A0B4J266 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRAV41A0A0B4J266 AC016575.1-201ENST00000607026 382 ntBASIC19.96■□□□□ 0.79
TRAV41A0A0B4J266 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV41A0A0B4J266 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC19.95■□□□□ 0.78
TRAV41A0A0B4J266 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV41A0A0B4J266 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRAV41A0A0B4J266 DRD5P2-201ENST00000421395 2012 ntBASIC19.95■□□□□ 0.78
TRAV41A0A0B4J266 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV41A0A0B4J266 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV41A0A0B4J266 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV41A0A0B4J266 AP002414.2-202ENST00000590929 1450 ntBASIC19.94■□□□□ 0.78
TRAV41A0A0B4J266 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TRAV41A0A0B4J266 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
TRAV41A0A0B4J266 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC19.94■□□□□ 0.78
TRAV41A0A0B4J266 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
TRAV41A0A0B4J266 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRAV41A0A0B4J266 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRAV41A0A0B4J266 SHF-206ENST00000560471 2499 ntTSL 5 BASIC19.93■□□□□ 0.78
TRAV41A0A0B4J266 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAV41A0A0B4J266 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAV41A0A0B4J266 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRAV41A0A0B4J266 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAV41A0A0B4J266 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRAV41A0A0B4J266 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAV41A0A0B4J266 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRAV41A0A0B4J266 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRAV41A0A0B4J266 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAV41A0A0B4J266 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRAV41A0A0B4J266 PROC-203ENST00000409048 1586 ntTSL 5 BASIC19.91■□□□□ 0.78
TRAV41A0A0B4J266 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRAV41A0A0B4J266 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRAV41A0A0B4J266 HLA-V-202ENST00000446817 847 ntBASIC19.91■□□□□ 0.78
TRAV41A0A0B4J266 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAV41A0A0B4J266 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
TRAV41A0A0B4J266 PEX7-203ENST00000541292 945 ntTSL 5 BASIC19.9■□□□□ 0.78
TRAV41A0A0B4J266 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC19.9■□□□□ 0.78
TRAV41A0A0B4J266 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRAV41A0A0B4J266 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRAV41A0A0B4J266 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
TRAV41A0A0B4J266 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV41A0A0B4J266 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV41A0A0B4J266 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV41A0A0B4J266 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV41A0A0B4J266 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRAV41A0A0B4J266 AC008813.1-201ENST00000536597 885 ntBASIC19.89■□□□□ 0.77
TRAV41A0A0B4J266 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC19.89■□□□□ 0.77
TRAV41A0A0B4J266 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRAV41A0A0B4J266 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRAV41A0A0B4J266 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRAV41A0A0B4J266 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRAV41A0A0B4J266 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRAV41A0A0B4J266 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRAV41A0A0B4J266 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRAV41A0A0B4J266 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
TRAV41A0A0B4J266 RPS2-210ENST00000530225 765 ntTSL 2 BASIC19.87■□□□□ 0.77
TRAV41A0A0B4J266 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
TRAV41A0A0B4J266 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRAV41A0A0B4J266 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms