Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 BCLAF1-221ENST00000534762 744 ntTSL 35.52□□□□□ -1.536e-7■□□□□ 10.6
U2AF1Q01081 BCLAF1-219ENST00000534269 4239 ntTSL 1 (best)5.42□□□□□ -1.546e-7■□□□□ 10.6
U2AF1Q01081 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.586e-7■□□□□ 10.6
U2AF1Q01081 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.9□□□□□ -1.626e-7■□□□□ 10.6
U2AF1Q01081 BCLAF1-212ENST00000530429 3167 ntTSL 54.63□□□□□ -1.676e-7■□□□□ 10.6
U2AF1Q01081 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.686e-7■□□□□ 10.6
U2AF1Q01081 HMGCR-213ENST00000515776 501 ntTSL 24.48□□□□□ -1.696e-7■□□□□ 10.6
U2AF1Q01081 BCLAF1-206ENST00000527613 5640 ntTSL 1 (best)4.03□□□□□ -1.766e-7■□□□□ 10.6
U2AF1Q01081 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.84□□□□□ -1.86e-7■□□□□ 10.6
U2AF1Q01081 BCLAF1-224ENST00000640069 7719 ntTSL 51.8□□□□□ -2.126e-7■□□□□ 10.6
U2AF1Q01081 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.412e-7■□□□□ 10.6
U2AF1Q01081 IP6K2-227ENST00000479914 1077 ntTSL 1 (best)22.91■■□□□ 1.262e-6■□□□□ 10.6
U2AF1Q01081 IP6K2-212ENST00000433104 2490 ntTSL 222.22■■□□□ 1.152e-6■□□□□ 10.6
U2AF1Q01081 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC19.6■□□□□ 0.732e-6■□□□□ 10.6
U2AF1Q01081 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC19.56■□□□□ 0.722e-6■□□□□ 10.6
U2AF1Q01081 IP6K2-207ENST00000416707 1260 ntTSL 1 (best)17.97■□□□□ 0.472e-6■□□□□ 10.6
U2AF1Q01081 IP6K2-201ENST00000328631 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.452e-6■□□□□ 10.6
U2AF1Q01081 IP6K2-220ENST00000449563 580 ntTSL 417.66■□□□□ 0.422e-6■□□□□ 10.6
U2AF1Q01081 IP6K2-221ENST00000449610 1673 ntTSL 2 BASIC17.38■□□□□ 0.372e-6■□□□□ 10.6
U2AF1Q01081 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC17■□□□□ 0.312e-6■□□□□ 10.6
U2AF1Q01081 IP6K2-203ENST00000412795 750 ntTSL 316.95■□□□□ 0.32e-6■□□□□ 10.6
U2AF1Q01081 IP6K2-206ENST00000413654 553 ntTSL 416.59■□□□□ 0.252e-6■□□□□ 10.6
U2AF1Q01081 IP6K2-225ENST00000455545 539 ntTSL 316.46■□□□□ 0.232e-6■□□□□ 10.6
U2AF1Q01081 IP6K2-222ENST00000450045 689 ntTSL 3 BASIC16.18■□□□□ 0.182e-6■□□□□ 10.6
U2AF1Q01081 IP6K2-224ENST00000454335 631 ntTSL 416.18■□□□□ 0.182e-6■□□□□ 10.6
U2AF1Q01081 IP6K2-219ENST00000446860 1565 ntTSL 2 BASIC15.31■□□□□ 0.042e-6■□□□□ 10.6
U2AF1Q01081 IP6K2-210ENST00000431721 2174 ntTSL 1 (best) BASIC14.95□□□□□ -0.022e-6■□□□□ 10.6
U2AF1Q01081 IP6K2-204ENST00000412850 543 ntTSL 413.88□□□□□ -0.192e-6■□□□□ 10.6
U2AF1Q01081 IP6K2-215ENST00000437427 576 ntTSL 411.89□□□□□ -0.512e-6■□□□□ 10.6
U2AF1Q01081 IP6K2-217ENST00000443853 579 ntTSL 311.89□□□□□ -0.512e-6■□□□□ 10.6
U2AF1Q01081 RBM39-214ENST00000434927 716 ntTSL 512.43□□□□□ -0.422e-21■□□□□ 10.6
U2AF1Q01081 RBM39-208ENST00000416108 577 ntTSL 411.17□□□□□ -0.622e-21■□□□□ 10.6
U2AF1Q01081 RBM39-209ENST00000416529 594 ntTSL 310.16□□□□□ -0.782e-21■□□□□ 10.6
U2AF1Q01081 RBM39-218ENST00000449489 432 ntTSL 59.64□□□□□ -0.872e-21■□□□□ 10.6
U2AF1Q01081 RBM39-232ENST00000481037 687 ntTSL 37.21□□□□□ -1.262e-21■□□□□ 10.6
U2AF1Q01081 RBM39-211ENST00000426951 840 ntTSL 1 (best)5.48□□□□□ -1.532e-21■□□□□ 10.6
U2AF1Q01081 RBM39-231ENST00000477334 949 ntTSL 25.48□□□□□ -1.532e-21■□□□□ 10.6
U2AF1Q01081 RBM39-220ENST00000455343 441 ntTSL 54.84□□□□□ -1.632e-21■□□□□ 10.6
U2AF1Q01081 RBM39-210ENST00000425184 526 ntTSL 34.79□□□□□ -1.642e-21■□□□□ 10.6
U2AF1Q01081 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.56□□□□□ -1.682e-21■□□□□ 10.6
U2AF1Q01081 RBM39-234ENST00000487604 370 ntTSL 34.37□□□□□ -1.712e-21■□□□□ 10.6
U2AF1Q01081 WRN-203ENST00000521620 3593 ntTSL 1 (best)4.59□□□□□ -1.672e-6■□□□□ 10.6
U2AF1Q01081 NCBP3-207ENST00000577169 645 ntTSL 1 (best)21.02■□□□□ 0.968e-6■□□□□ 10.6
U2AF1Q01081 SRGAP2-207ENST00000604010 884 ntTSL 518.29■□□□□ 0.528e-6■□□□□ 10.6
U2AF1Q01081 SRGAP2-209ENST00000604247 2499 nt16.76■□□□□ 0.278e-6■□□□□ 10.6
U2AF1Q01081 SRGAP2-214ENST00000605476 2484 ntTSL 1 (best)13.67□□□□□ -0.228e-6■□□□□ 10.6
U2AF1Q01081 ZMYND8-202ENST00000311275 5362 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.258e-6■□□□□ 10.6
U2AF1Q01081 SRGAP2-217ENST00000624873 4705 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.288e-6■□□□□ 10.6
U2AF1Q01081 ZMYND8-205ENST00000360911 4991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.318e-6■□□□□ 10.6
U2AF1Q01081 ZMYND8-217ENST00000536340 5273 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.348e-6■□□□□ 10.6
U2AF1Q01081 ZMYND8-220ENST00000617418 3411 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.368e-6■□□□□ 10.6
U2AF1Q01081 ZMYND8-204ENST00000355972 5542 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.488e-6■□□□□ 10.6
U2AF1Q01081 ZMYND8-213ENST00000461685 3567 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.58e-6■□□□□ 10.6
U2AF1Q01081 ZMYND8-208ENST00000435836 670 ntTSL 511.78□□□□□ -0.528e-6■□□□□ 10.6
U2AF1Q01081 NCBP3-204ENST00000574911 2701 ntTSL 1 (best)11.53□□□□□ -0.568e-6■□□□□ 10.6
U2AF1Q01081 ZMYND8-219ENST00000611941 5090 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.68e-6■□□□□ 10.6
U2AF1Q01081 ZMYND8-201ENST00000262975 4139 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.638e-6■□□□□ 10.6
U2AF1Q01081 NCBP3-205ENST00000575815 4096 ntTSL 211.08□□□□□ -0.648e-6■□□□□ 10.6
U2AF1Q01081 ZMYND8-218ENST00000540497 3405 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.668e-6■□□□□ 10.6
U2AF1Q01081 SRGAP2-203ENST00000573034 6301 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.678e-6■□□□□ 10.6
U2AF1Q01081 ZMYND8-207ENST00000396281 5511 ntAPPRIS ALT2 TSL 2 BASIC10.76□□□□□ -0.698e-6■□□□□ 10.6
U2AF1Q01081 SRGAP2-212ENST00000604925 1013 ntTSL 510.58□□□□□ -0.728e-6■□□□□ 10.6
U2AF1Q01081 ZMYND8-203ENST00000352431 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC10.5□□□□□ -0.738e-6■□□□□ 10.6
U2AF1Q01081 ZMYND8-212ENST00000458360 3729 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.768e-6■□□□□ 10.6
U2AF1Q01081 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC10.26□□□□□ -0.778e-6■□□□□ 10.6
U2AF1Q01081 NCBP3-201ENST00000389005 12770 ntAPPRIS P1 TSL 5 BASIC10.12□□□□□ -0.798e-6■□□□□ 10.6
U2AF1Q01081 ZMYND8-216ENST00000471951 4053 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.88e-6■□□□□ 10.6
U2AF1Q01081 ZMYND8-221ENST00000619049 4027 ntTSL 5 BASIC9.74□□□□□ -0.858e-6■□□□□ 10.6
U2AF1Q01081 ZMYND8-211ENST00000446994 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.878e-6■□□□□ 10.6
U2AF1Q01081 ZMYND8-210ENST00000446894 341 ntTSL 25.24□□□□□ -1.578e-6■□□□□ 10.6
U2AF1Q01081 A2M-203ENST00000462568 546 ntTSL 24.86□□□□□ -1.638e-6■□□□□ 10.6
U2AF1Q01081 NCL-205ENST00000453992 964 ntTSL 425.79■■□□□ 1.729e-16■□□□□ 10.6
U2AF1Q01081 NCL-203ENST00000417652 568 ntTSL 49.2□□□□□ -0.949e-16■□□□□ 10.6
U2AF1Q01081 NCL-206ENST00000454824 606 ntTSL 39.2□□□□□ -0.949e-16■□□□□ 10.6
U2AF1Q01081 NCL-204ENST00000436894 562 ntTSL 45.67□□□□□ -1.59e-16■□□□□ 10.6
U2AF1Q01081 GAS6-202ENST00000476291 537 ntTSL 228.39■■■□□ 2.141e-7■□□□□ 10.6
U2AF1Q01081 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.571e-7■□□□□ 10.6
U2AF1Q01081 RABGGTB-201ENST00000319942 1496 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.281e-7■□□□□ 10.6
U2AF1Q01081 RABGGTB-212ENST00000491266 961 ntTSL 38.15□□□□□ -1.11e-7■□□□□ 10.6
U2AF1Q01081 RABGGTB-209ENST00000473406 721 ntTSL 57.79□□□□□ -1.161e-7■□□□□ 10.6
U2AF1Q01081 RABGGTB-208ENST00000471759 2137 ntTSL 27.48□□□□□ -1.211e-7■□□□□ 10.6
U2AF1Q01081 RABGGTB-207ENST00000470201 848 ntTSL 36.11□□□□□ -1.431e-7■□□□□ 10.6
U2AF1Q01081 RABGGTB-204ENST00000461653 1702 ntTSL 55.63□□□□□ -1.511e-7■□□□□ 10.6
U2AF1Q01081 RABGGTB-213ENST00000496055 3863 ntTSL 25.46□□□□□ -1.541e-7■□□□□ 10.6
U2AF1Q01081 RABGGTB-210ENST00000485459 788 ntTSL 55.23□□□□□ -1.571e-7■□□□□ 10.6
U2AF1Q01081 RABGGTB-211ENST00000489450 586 ntTSL 54.21□□□□□ -1.741e-7■□□□□ 10.6
U2AF1Q01081 NUP98-218ENST00000530516 391 ntTSL 23.71□□□□□ -1.821e-7■□□□□ 10.6
U2AF1Q01081 HNRNPH1-222ENST00000513972 761 ntTSL 217.04■□□□□ 0.326e-9■□□□□ 10.5
U2AF1Q01081 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC25.47■■□□□ 1.671e-9■□□□□ 10.5
U2AF1Q01081 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC25.18■■□□□ 1.621e-9■□□□□ 10.5
U2AF1Q01081 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC25.03■■□□□ 1.61e-9■□□□□ 10.5
U2AF1Q01081 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.181e-9■□□□□ 10.5
U2AF1Q01081 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC22.08■■□□□ 1.121e-9■□□□□ 10.5
U2AF1Q01081 SELENOF-205ENST00000469566 831 ntTSL 212.84□□□□□ -0.351e-9■□□□□ 10.5
U2AF1Q01081 SELENOF-204ENST00000467557 499 ntTSL 510.33□□□□□ -0.761e-9■□□□□ 10.5
U2AF1Q01081 HNRNPH1-243ENST00000522958 580 ntTSL 217.9■□□□□ 0.462e-9■□□□□ 10.5
U2AF1Q01081 HNRNPH1-241ENST00000521790 549 ntTSL 210.31□□□□□ -0.762e-9■□□□□ 10.5
U2AF1Q01081 HSP90AB1-202ENST00000371554 2674 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.279e-52■□□□□ 10.5
U2AF1Q01081 RAB2B-202ENST00000417141 559 ntTSL 1 (best)16.78■□□□□ 0.284e-6■□□□□ 10.5
U2AF1Q01081 RAB2B-203ENST00000461909 630 ntTSL 216.65■□□□□ 0.264e-6■□□□□ 10.5
Retrieved 100 of 10,096 protein–RNA pairs in 198.9 ms