RNA–Protein interactions for RNA: ENST00000436894.1

NCL-204, Transcript of nucleolin, humanhuman

TSL 4

Gene NCL, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCL-204ENST00000436894 AEBP2Q6ZN18 517 aaPredicted RBP18.74■□□□□ 0.59
NCL-204ENST00000436894 CHIC1Q5VXU3 224 aa18.5■□□□□ 0.55
NCL-204ENST00000436894 PHF23Q9BUL5 403 aaPredicted RBP16.4■□□□□ 0.22
NCL-204ENST00000436894 SENP3Q9H4L4 574 aaPredicted RBP15.7■□□□□ 0.1
NCL-204ENST00000436894 PLPPR3Q6T4P5 718 aa15.12■□□□□ 0.01
NCL-204ENST00000436894 FOXD1Q16676 465 aa14.64□□□□□ -0.07
NCL-204ENST00000436894 PPP6R1Q9UPN7 881 aa14.39□□□□□ -0.11
NCL-204ENST00000436894 ADRA2BP18089 450 aa14.38□□□□□ -0.11
NCL-204ENST00000436894 PIAS4Q8N2W9 510 aaPredicted RBP13.86□□□□□ -0.19
NCL-204ENST00000436894 KCNA4P22459 653 aa13.53□□□□□ -0.24
NCL-204ENST00000436894 PPP4R3CPQ6ZMV5 832 aa13.42□□□□□ -0.26
NCL-204ENST00000436894 MSH5O43196 834 aa13.25□□□□□ -0.29
NCL-204ENST00000436894 NCBP3Q53F19 620 aaKnown RBP13.06□□□□□ -0.32
NCL-204ENST00000436894 POTEDQ86YR6 584 aa13.03□□□□□ -0.32
NCL-204ENST00000436894 NPM3O75607 178 aaKnown RBP13□□□□□ -0.33
NCL-204ENST00000436894 MAPK8IP2Q13387 824 aaPredicted RBP12.98□□□□□ -0.33
NCL-204ENST00000436894 SCAF1Q9H7N4 1312 aaKnown RBP12.97□□□□□ -0.33
NCL-204ENST00000436894 EHMT2Q96KQ7 1210 aa12.96□□□□□ -0.33
NCL-204ENST00000436894 CNKSR2Q8WXI2 1034 aa12.92□□□□□ -0.34
NCL-204ENST00000436894 SLC4A1APQ9BWU0 796 aaKnown RBP12.87□□□□□ -0.35
NCL-204ENST00000436894 CSRNP3Q8WYN3 585 aa12.64□□□□□ -0.39
NCL-204ENST00000436894 DMRT2Q9Y5R5 561 aa12.62□□□□□ -0.39
NCL-204ENST00000436894 RNF216Q9NWF9 866 aaPredicted RBP12.59□□□□□ -0.39
NCL-204ENST00000436894 ZBTB22O15209 634 aa12.5□□□□□ -0.41
NCL-204ENST00000436894 HOXD11P31277 338 aaPredicted RBP12.47□□□□□ -0.41
NCL-204ENST00000436894 DNAJC5BQ9UF47 199 aa12.43□□□□□ -0.42
NCL-204ENST00000436894 FOXD4L1Q9NU39 408 aa12.27□□□□□ -0.45
NCL-204ENST00000436894 SLC4A2P04920 1241 aa12.22□□□□□ -0.45
NCL-204ENST00000436894 DCAF8L1A6NGE4 600 aa12.11□□□□□ -0.47
NCL-204ENST00000436894 MYCNP04198 464 aaPredicted RBP11.92□□□□□ -0.5
NCL-204ENST00000436894 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.9□□□□□ -0.54e-30■■■■■ 33.8
NCL-204ENST00000436894 U3KPZ7 1027 aaPredicted RBP11.78□□□□□ -0.52
NCL-204ENST00000436894 ATXN8OSP0DMR3 200 aa11.75□□□□□ -0.53
NCL-204ENST00000436894 ATF5Q9Y2D1 282 aaPredicted RBP11.73□□□□□ -0.53
NCL-204ENST00000436894 SAMD1Q6SPF0 538 aaPredicted RBP11.6□□□□□ -0.55
NCL-204ENST00000436894 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.59□□□□□ -0.55
NCL-204ENST00000436894 HNRNPUL2Q1KMD3 747 aaKnown RBP11.59□□□□□ -0.55
NCL-204ENST00000436894 RNF39Q9H2S5 420 aa11.45□□□□□ -0.58
NCL-204ENST00000436894 SPINK5Q9NQ38 1064 aaPredicted RBP11.41□□□□□ -0.58
NCL-204ENST00000436894 ZNF219Q9P2Y4 722 aaPredicted RBP11.41□□□□□ -0.58
NCL-204ENST00000436894 FKBP8Q14318 412 aa11.39□□□□□ -0.59
NCL-204ENST00000436894 APLP2Q06481 763 aa11.36□□□□□ -0.59
NCL-204ENST00000436894 TRHP20396 242 aaPredicted RBP11.33□□□□□ -0.6
NCL-204ENST00000436894 CAPN15O75808 1086 aa11.28□□□□□ -0.6
NCL-204ENST00000436894 C1QBPQ07021 282 aaKnown RBP11.27□□□□□ -0.61
NCL-204ENST00000436894 CACNB1Q02641 598 aaPredicted RBP11.26□□□□□ -0.61
NCL-204ENST00000436894 POLA2Q14181 598 aa11.21□□□□□ -0.61
NCL-204ENST00000436894 MKRN4PQ13434 485 aaPredicted RBP11.2□□□□□ -0.62
NCL-204ENST00000436894 ABCB7O75027 752 aa11.16□□□□□ -0.62
NCL-204ENST00000436894 FBLN2P98095 1184 aa11.05□□□□□ -0.64
NCL-204ENST00000436894 SPDYE4A6NLX3 237 aa11.04□□□□□ -0.64
NCL-204ENST00000436894 DSG3P32926 999 aa11.02□□□□□ -0.65
NCL-204ENST00000436894 NISCHQ9Y2I1 1504 aa10.99□□□□□ -0.65
NCL-204ENST00000436894 RTN4Q9NQC3 1192 aaKnown RBP10.96□□□□□ -0.65
NCL-204ENST00000436894 ZBTB12Q9Y330 459 aaPredicted RBP10.91□□□□□ -0.66
NCL-204ENST00000436894 PROM2Q8N271 834 aa10.88□□□□□ -0.67
NCL-204ENST00000436894 AMER1Q5JTC6 1135 aaPredicted RBP10.84□□□□□ -0.67
NCL-204ENST00000436894 OSCARQ8IYS5 282 aa10.84□□□□□ -0.67
NCL-204ENST00000436894 FBXO3Q9UK99 471 aa10.77□□□□□ -0.69
NCL-204ENST00000436894 ZNF692Q9BU19 519 aaPredicted RBP10.75□□□□□ -0.69
NCL-204ENST00000436894 VASPP50552 380 aaPredicted RBP10.7□□□□□ -0.7
NCL-204ENST00000436894 SPDYE2BA6NHP3 402 aa10.69□□□□□ -0.7
NCL-204ENST00000436894 SPDYE6P0CI01 402 aa10.69□□□□□ -0.7
NCL-204ENST00000436894 SPDYE2Q495Y8 402 aa10.69□□□□□ -0.7
NCL-204ENST00000436894 SSUH2Q9Y2M2 353 aa10.68□□□□□ -0.7
NCL-204ENST00000436894 PABPN1Q86U42 306 aaKnown RBP eCLIP10.64□□□□□ -0.71
NCL-204ENST00000436894 IFNLR1Q8IU57 520 aaPredicted RBP10.63□□□□□ -0.71
NCL-204ENST00000436894 STAG3Q9UJ98 1225 aa10.47□□□□□ -0.73
NCL-204ENST00000436894 KLHL34Q8N239 644 aa10.44□□□□□ -0.74
NCL-204ENST00000436894 PLCD3Q8N3E9 789 aa10.44□□□□□ -0.74
NCL-204ENST00000436894 MIER1Q8N108 512 aa10.43□□□□□ -0.74
NCL-204ENST00000436894 PKD2Q13563 968 aa10.4□□□□□ -0.74
NCL-204ENST00000436894 RBM42Q9BTD8 480 aaKnown RBP10.38□□□□□ -0.75
NCL-204ENST00000436894 SPOCK2Q92563 424 aa10.37□□□□□ -0.75
NCL-204ENST00000436894 AKT1S1Q96B36 256 aa10.36□□□□□ -0.75
NCL-204ENST00000436894 SLC24A1O60721 1099 aa10.33□□□□□ -0.76
NCL-204ENST00000436894 REM2Q8IYK8 340 aaPredicted RBP10.33□□□□□ -0.76
NCL-204ENST00000436894 CLEC11AQ9Y240 323 aa10.32□□□□□ -0.76
NCL-204ENST00000436894 SPDYE1Q8NFV5 336 aaPredicted RBP10.3□□□□□ -0.76
NCL-204ENST00000436894 DCAF8L2P0C7V8 631 aa10.27□□□□□ -0.77
NCL-204ENST00000436894 ECM2O94769 699 aaPredicted RBP10.24□□□□□ -0.77
NCL-204ENST00000436894 PLEKHG5O94827 1062 aa10.24□□□□□ -0.77
NCL-204ENST00000436894 PITPNM1O00562 1244 aa10.23□□□□□ -0.77
NCL-204ENST00000436894 PRR29P0C7W0 189 aa10.23□□□□□ -0.77
NCL-204ENST00000436894 CREBZFQ9NS37 354 aa10.22□□□□□ -0.77
NCL-204ENST00000436894 ZBTB47Q9UFB7 747 aaPredicted RBP10.21□□□□□ -0.77
NCL-204ENST00000436894 CIZ1Q9ULV3 898 aaPredicted RBP10.2□□□□□ -0.78
NCL-204ENST00000436894 RGL2O15211 777 aa10.18□□□□□ -0.78
NCL-204ENST00000436894 MNX1P50219 401 aaPredicted RBP10.17□□□□□ -0.78
NCL-204ENST00000436894 POTEHQ6S545 545 aa10.16□□□□□ -0.78
NCL-204ENST00000436894 NUBP1P53384 320 aa10.15□□□□□ -0.78
NCL-204ENST00000436894 ABCC9O60706 1549 aa10.15□□□□□ -0.78
NCL-204ENST00000436894 NPM1P06748 294 aaKnown RBP eCLIP10.11□□□□□ -0.793e-10■■■■□ 19.7
NCL-204ENST00000436894 CHADLQ6NUI6 762 aa10.09□□□□□ -0.79
NCL-204ENST00000436894 PLCB2Q00722 1185 aa10.08□□□□□ -0.8
NCL-204ENST00000436894 RASEFQ8IZ41 740 aa10.07□□□□□ -0.8
NCL-204ENST00000436894 DCAF8Q5TAQ9 597 aa10.06□□□□□ -0.8
NCL-204ENST00000436894 RNF25Q96BH1 459 aaPredicted RBP10.04□□□□□ -0.8
NCL-204ENST00000436894 GSE1Q14687 1217 aa10.03□□□□□ -0.8
NCL-204ENST00000436894 FAM212AQ96EL1 285 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms