RNA–Protein interactions for RNA: ENST00000574911.5

NCBP3-204, Transcript of nuclear cap binding subunit 3, humanhuman

TSL 1 (best)

Gene NCBP3, Length 2,701 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3-204ENST00000574911 NISCHQ9Y2I1 1504 aa18.79■□□□□ 0.6
NCBP3-204ENST00000574911 CCDC180Q9P1Z9 1646 aa16.04■□□□□ 0.16
NCBP3-204ENST00000574911 ZCCHC6Q5VYS8 1495 aaKnown RBP15.9■□□□□ 0.14
NCBP3-204ENST00000574911 SHROOM4Q9ULL8 1493 aa15.84■□□□□ 0.13
NCBP3-204ENST00000574911 SUPT5HO00267 1087 aaKnown RBP15.52■□□□□ 0.07
NCBP3-204ENST00000574911 DCAF1Q9Y4B6 1507 aa15.49■□□□□ 0.07
NCBP3-204ENST00000574911 DCAF8L2P0C7V8 631 aa15.4■□□□□ 0.06
NCBP3-204ENST00000574911 CHIC1Q5VXU3 224 aa15.16■□□□□ 0.02
NCBP3-204ENST00000574911 MYO15BQ96JP2 1530 aa15.09■□□□□ 0.01
NCBP3-204ENST00000574911 ABCC9O60706 1549 aa14.99□□□□□ -0.01
NCBP3-204ENST00000574911 SCRIBQ14160 1630 aa14.93□□□□□ -0.02
NCBP3-204ENST00000574911 RSF1Q96T23 1441 aaPredicted RBP14.83□□□□□ -0.04
NCBP3-204ENST00000574911 NACADO15069 1562 aa14.82□□□□□ -0.04
NCBP3-204ENST00000574911 RB1CC1Q8TDY2 1594 aa14.69□□□□□ -0.06
NCBP3-204ENST00000574911 LOC105371045A0A1W2PR82 267 aa14.65□□□□□ -0.07
NCBP3-204ENST00000574911 HRCP23327 699 aa14.63□□□□□ -0.07
NCBP3-204ENST00000574911 CECR2Q9BXF3 1484 aa14.61□□□□□ -0.07
NCBP3-204ENST00000574911 PCGF6Q9BYE7 350 aa14.58□□□□□ -0.08
NCBP3-204ENST00000574911 MROH2BQ7Z745 1585 aa14.58□□□□□ -0.08
NCBP3-204ENST00000574911 TRIM41Q8WV44 630 aa14.5□□□□□ -0.09
NCBP3-204ENST00000574911 WIZO95785 1651 aa14.49□□□□□ -0.09
NCBP3-204ENST00000574911 BAZ1AQ9NRL2 1556 aaPredicted RBP14.44□□□□□ -0.1
NCBP3-204ENST00000574911 TRIM26Q12899 539 aaPredicted RBP14.38□□□□□ -0.11
NCBP3-204ENST00000574911 EIF4G1Q04637 1599 aaKnown RBP14.35□□□□□ -0.11
NCBP3-204ENST00000574911 UNC13AQ9UPW8 1703 aa14.33□□□□□ -0.12
NCBP3-204ENST00000574911 SMARCA4P51532 1647 aa14.31□□□□□ -0.12
NCBP3-204ENST00000574911 FAM9AQ8IZU1 332 aaPredicted RBP14.31□□□□□ -0.12
NCBP3-204ENST00000574911 TOP2AP11388 1531 aaKnown RBP14.31□□□□□ -0.12
NCBP3-204ENST00000574911 PPARGC1BQ86YN6 1023 aaKnown RBP14.26□□□□□ -0.13
NCBP3-204ENST00000574911 CCDC88BA6NC98 1476 aa14.22□□□□□ -0.13
NCBP3-204ENST00000574911 SMARCA2P51531 1590 aa14.22□□□□□ -0.13
NCBP3-204ENST00000574911 BICRAQ9NZM4 1560 aa14.17□□□□□ -0.14
NCBP3-204ENST00000574911 EHMT2Q96KQ7 1210 aa14.13□□□□□ -0.15
NCBP3-204ENST00000574911 ABCC8Q09428 1581 aa14.12□□□□□ -0.15
NCBP3-204ENST00000574911 PEG3Q9GZU2 1588 aa14.09□□□□□ -0.15
NCBP3-204ENST00000574911 ZEB1P37275 1124 aaPredicted RBP14.08□□□□□ -0.15
NCBP3-204ENST00000574911 PABPN1Q86U42 306 aaKnown RBP eCLIP14.07□□□□□ -0.16
NCBP3-204ENST00000574911 SOGA1O94964 1423 aa13.99□□□□□ -0.17
NCBP3-204ENST00000574911 EEA1Q15075 1411 aa13.99□□□□□ -0.17
NCBP3-204ENST00000574911 WRNQ14191 1432 aaPredicted RBP eCLIP13.96□□□□□ -0.17
NCBP3-204ENST00000574911 ATAD2BQ9ULI0 1458 aa13.95□□□□□ -0.18
NCBP3-204ENST00000574911 TNIKQ9UKE5 1360 aa13.94□□□□□ -0.18
NCBP3-204ENST00000574911 CEP162Q5TB80 1403 aa13.92□□□□□ -0.18
NCBP3-204ENST00000574911 RUSC2Q8N2Y8 1516 aa13.92□□□□□ -0.18
NCBP3-204ENST00000574911 CSRNP3Q8WYN3 585 aa13.92□□□□□ -0.18
NCBP3-204ENST00000574911 BAZ1BQ9UIG0 1483 aaKnown RBP13.88□□□□□ -0.19
NCBP3-204ENST00000574911 SYNJ1O43426 1573 aa13.87□□□□□ -0.19
NCBP3-204ENST00000574911 GOLGA3Q08378 1498 aa13.86□□□□□ -0.19
NCBP3-204ENST00000574911 KIF21BO75037 1637 aa13.8□□□□□ -0.2
NCBP3-204ENST00000574911 UBTFP17480 764 aaKnown RBP13.8□□□□□ -0.2
NCBP3-204ENST00000574911 CEP164Q9UPV0 1460 aa13.79□□□□□ -0.2
NCBP3-204ENST00000574911 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.75□□□□□ -0.21
NCBP3-204ENST00000574911 TOP2BQ02880 1626 aa13.73□□□□□ -0.21
NCBP3-204ENST00000574911 CCER1Q8TC90 406 aaPredicted RBP13.72□□□□□ -0.21
NCBP3-204ENST00000574911 HMGXB3Q12766 1538 aa13.71□□□□□ -0.21
NCBP3-204ENST00000574911 NCAPD3P42695 1498 aa13.7□□□□□ -0.22
NCBP3-204ENST00000574911 BIVM-ERCC5R4GMW8 1640 aa13.7□□□□□ -0.22
NCBP3-204ENST00000574911 TTBK1Q5TCY1 1321 aaPredicted RBP13.68□□□□□ -0.22
NCBP3-204ENST00000574911 CLIP1P30622 1438 aa13.67□□□□□ -0.22
NCBP3-204ENST00000574911 RAPGEF2Q9Y4G8 1499 aa13.66□□□□□ -0.22
NCBP3-204ENST00000574911 VPS8Q8N3P4 1428 aa13.63□□□□□ -0.23
NCBP3-204ENST00000574911 ERICH3Q5RHP9 1530 aa13.59□□□□□ -0.23
NCBP3-204ENST00000574911 PRXQ9BXM0 1461 aa13.58□□□□□ -0.24
NCBP3-204ENST00000574911 CUX1P39880 1505 aa13.58□□□□□ -0.24
NCBP3-204ENST00000574911 CFTRP13569 1480 aa13.57□□□□□ -0.24
NCBP3-204ENST00000574911 KIF27Q86VH2 1401 aa13.5□□□□□ -0.25
NCBP3-204ENST00000574911 APLP2Q06481 763 aa13.49□□□□□ -0.25
NCBP3-204ENST00000574911 ARAP1Q96P48 1450 aa13.49□□□□□ -0.25
NCBP3-204ENST00000574911 PRDM2Q13029 1718 aa13.49□□□□□ -0.25
NCBP3-204ENST00000574911 HNRNPUL2Q1KMD3 747 aaKnown RBP13.46□□□□□ -0.26
NCBP3-204ENST00000574911 RANGAP1P46060 587 aaPredicted RBP13.45□□□□□ -0.26
NCBP3-204ENST00000574911 DIEXFQ68CQ4 756 aaKnown RBP13.45□□□□□ -0.26
NCBP3-204ENST00000574911 SCAF1Q9H7N4 1312 aaKnown RBP13.42□□□□□ -0.26
NCBP3-204ENST00000574911 CADPSQ9ULU8 1353 aa13.41□□□□□ -0.26
NCBP3-204ENST00000574911 ZNF316A6NFI3 1004 aaPredicted RBP13.4□□□□□ -0.26
NCBP3-204ENST00000574911 ARHGAP35Q9NRY4 1499 aa13.37□□□□□ -0.27
NCBP3-204ENST00000574911 CUX2O14529 1486 aa13.36□□□□□ -0.27
NCBP3-204ENST00000574911 IGF1RP08069 1367 aa13.36□□□□□ -0.27
NCBP3-204ENST00000574911 KANK4Q5T7N3 995 aaPredicted RBP13.35□□□□□ -0.27
NCBP3-204ENST00000574911 ACIN1Q9UKV3 1341 aaKnown RBP13.34□□□□□ -0.27
NCBP3-204ENST00000574911 FGD5Q6ZNL6 1462 aa13.33□□□□□ -0.28
NCBP3-204ENST00000574911 CC2D2AQ9P2K1 1620 aa13.33□□□□□ -0.28
NCBP3-204ENST00000574911 RRBP1Q9P2E9 1410 aaKnown RBP13.33□□□□□ -0.28
NCBP3-204ENST00000574911 CLSPNQ9HAW4 1339 aa13.3□□□□□ -0.28
NCBP3-204ENST00000574911 NEUROD1Q13562 356 aa13.29□□□□□ -0.28
NCBP3-204ENST00000574911 CARMIL1Q5VZK9 1371 aa13.29□□□□□ -0.28
NCBP3-204ENST00000574911 DHX57Q6P158 1386 aaKnown RBP13.28□□□□□ -0.28
NCBP3-204ENST00000574911 FANCD2Q9BXW9 1451 aa13.27□□□□□ -0.29
NCBP3-204ENST00000574911 MAP3K1Q13233 1512 aa13.27□□□□□ -0.29
NCBP3-204ENST00000574911 CENPBP07199 599 aaPredicted RBP13.26□□□□□ -0.29
NCBP3-204ENST00000574911 CCNB3Q8WWL7 1395 aa13.24□□□□□ -0.29
NCBP3-204ENST00000574911 DNMBPQ6XZF7 1577 aa13.24□□□□□ -0.29
NCBP3-204ENST00000574911 TIAM1Q13009 1591 aa13.23□□□□□ -0.29
NCBP3-204ENST00000574911 ABCA10Q8WWZ4 1543 aa13.21□□□□□ -0.3
NCBP3-204ENST00000574911 TOPBP1Q92547 1522 aa13.19□□□□□ -0.3
NCBP3-204ENST00000574911 POLA1P09884 1462 aaPredicted RBP13.18□□□□□ -0.3
NCBP3-204ENST00000574911 RAD54L2Q9Y4B4 1467 aa13.18□□□□□ -0.3
NCBP3-204ENST00000574911 LRRC9Q6ZRR7 1453 aa13.17□□□□□ -0.3
NCBP3-204ENST00000574911 MIER1Q8N108 512 aa13.17□□□□□ -0.3
NCBP3-204ENST00000574911 FHAD1B1AJZ9 1412 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms