RNA–Protein interactions for RNA: ENST00000417652.5

NCL-203, Transcript of nucleolin, humanhuman

TSL 4

Gene NCL, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCL-203ENST00000417652 NISCHQ9Y2I1 1504 aa16.34■□□□□ 0.21
NCL-203ENST00000417652 AEBP2Q6ZN18 517 aaPredicted RBP14.96□□□□□ -0.01
NCL-203ENST00000417652 CCDC180Q9P1Z9 1646 aa14.47□□□□□ -0.09
NCL-203ENST00000417652 ABCC9O60706 1549 aa14.24□□□□□ -0.13
NCL-203ENST00000417652 CHIC1Q5VXU3 224 aa14.16□□□□□ -0.14
NCL-203ENST00000417652 DCAF8L2P0C7V8 631 aa13.9□□□□□ -0.18
NCL-203ENST00000417652 RB1CC1Q8TDY2 1594 aa13.67□□□□□ -0.22
NCL-203ENST00000417652 NACADO15069 1562 aa13.64□□□□□ -0.23
NCL-203ENST00000417652 ZCCHC6Q5VYS8 1495 aaKnown RBP13.57□□□□□ -0.24
NCL-203ENST00000417652 MYO15BQ96JP2 1530 aa13.51□□□□□ -0.25
NCL-203ENST00000417652 DCAF1Q9Y4B6 1507 aa13.47□□□□□ -0.25
NCL-203ENST00000417652 PABPN1Q86U42 306 aaKnown RBP eCLIP13.38□□□□□ -0.27
NCL-203ENST00000417652 UNC13AQ9UPW8 1703 aa13.3□□□□□ -0.28
NCL-203ENST00000417652 SCRIBQ14160 1630 aa13.28□□□□□ -0.28
NCL-203ENST00000417652 BICRAQ9NZM4 1560 aa13.17□□□□□ -0.3
NCL-203ENST00000417652 SHROOM4Q9ULL8 1493 aa13.06□□□□□ -0.32
NCL-203ENST00000417652 DNAJC5BQ9UF47 199 aa13.02□□□□□ -0.33
NCL-203ENST00000417652 SENP3Q9H4L4 574 aaPredicted RBP12.97□□□□□ -0.33
NCL-203ENST00000417652 EIF4G1Q04637 1599 aaKnown RBP12.87□□□□□ -0.35
NCL-203ENST00000417652 CC2D2AQ9P2K1 1620 aa12.83□□□□□ -0.36
NCL-203ENST00000417652 CECR2Q9BXF3 1484 aa12.78□□□□□ -0.36
NCL-203ENST00000417652 PHF23Q9BUL5 403 aaPredicted RBP12.71□□□□□ -0.37
NCL-203ENST00000417652 BAZ1AQ9NRL2 1556 aaPredicted RBP12.68□□□□□ -0.38
NCL-203ENST00000417652 SMARCA4P51532 1647 aa12.66□□□□□ -0.38
NCL-203ENST00000417652 SMARCA2P51531 1590 aa12.6□□□□□ -0.39
NCL-203ENST00000417652 ATAD2BQ9ULI0 1458 aa12.6□□□□□ -0.39
NCL-203ENST00000417652 MROH2BQ7Z745 1585 aa12.6□□□□□ -0.39
NCL-203ENST00000417652 NCAPD3P42695 1498 aa12.58□□□□□ -0.4
NCL-203ENST00000417652 BAZ1BQ9UIG0 1483 aaKnown RBP12.54□□□□□ -0.4
NCL-203ENST00000417652 HMGXB3Q12766 1538 aa12.49□□□□□ -0.41
NCL-203ENST00000417652 PEG3Q9GZU2 1588 aa12.48□□□□□ -0.41
NCL-203ENST00000417652 RSF1Q96T23 1441 aaPredicted RBP12.47□□□□□ -0.41
NCL-203ENST00000417652 WIZO95785 1651 aa12.47□□□□□ -0.41
NCL-203ENST00000417652 SUPT5HO00267 1087 aaKnown RBP12.36□□□□□ -0.43
NCL-203ENST00000417652 ERCC6Q03468 1493 aa12.33□□□□□ -0.44
NCL-203ENST00000417652 TOP2AP11388 1531 aaKnown RBP12.32□□□□□ -0.44
NCL-203ENST00000417652 NESP48681 1621 aa12.29□□□□□ -0.44
NCL-203ENST00000417652 CADPSQ9ULU8 1353 aa12.27□□□□□ -0.45
NCL-203ENST00000417652 LAMC3Q9Y6N6 1575 aa12.25□□□□□ -0.45
NCL-203ENST00000417652 PDS5BQ9NTI5 1447 aa12.24□□□□□ -0.45
NCL-203ENST00000417652 CCDC88BA6NC98 1476 aa12.21□□□□□ -0.45
NCL-203ENST00000417652 CFTRP13569 1480 aa12.14□□□□□ -0.47
NCL-203ENST00000417652 KIF21AQ7Z4S6 1674 aa12.13□□□□□ -0.47
NCL-203ENST00000417652 FANCD2Q9BXW9 1451 aa12.12□□□□□ -0.47
NCL-203ENST00000417652 CEP164Q9UPV0 1460 aa12.11□□□□□ -0.47
NCL-203ENST00000417652 CUX2O14529 1486 aa12.09□□□□□ -0.47
NCL-203ENST00000417652 MRC2Q9UBG0 1479 aa12.07□□□□□ -0.48
NCL-203ENST00000417652 FOXD1Q16676 465 aa12.04□□□□□ -0.48
NCL-203ENST00000417652 PRDM2Q13029 1718 aa12.03□□□□□ -0.48
NCL-203ENST00000417652 THOC2Q8NI27 1593 aaKnown RBP12.02□□□□□ -0.49
NCL-203ENST00000417652 WDR62O43379 1518 aa11.97□□□□□ -0.49
NCL-203ENST00000417652 URB2Q14146 1524 aaKnown RBP11.96□□□□□ -0.5
NCL-203ENST00000417652 ABCC8Q09428 1581 aa11.95□□□□□ -0.5
NCL-203ENST00000417652 TOPBP1Q92547 1522 aa11.91□□□□□ -0.5
NCL-203ENST00000417652 DNMBPQ6XZF7 1577 aa11.88□□□□□ -0.51
NCL-203ENST00000417652 IFT140Q96RY7 1462 aa11.84□□□□□ -0.51
NCL-203ENST00000417652 SOGA1O94964 1423 aa11.82□□□□□ -0.52
NCL-203ENST00000417652 CUX1P39880 1505 aa11.81□□□□□ -0.52
NCL-203ENST00000417652 WRNQ14191 1432 aaPredicted RBP eCLIP11.8□□□□□ -0.52
NCL-203ENST00000417652 POLA1P09884 1462 aaPredicted RBP11.8□□□□□ -0.52
NCL-203ENST00000417652 FGD5Q6ZNL6 1462 aa11.79□□□□□ -0.52
NCL-203ENST00000417652 POTEDQ86YR6 584 aa11.79□□□□□ -0.52
NCL-203ENST00000417652 RAD54L2Q9Y4B4 1467 aa11.78□□□□□ -0.52
NCL-203ENST00000417652 ZNF608Q9ULD9 1512 aaPredicted RBP11.76□□□□□ -0.53
NCL-203ENST00000417652 TDRD9Q8NDG6 1382 aaKnown RBP11.76□□□□□ -0.53
NCL-203ENST00000417652 AQRO60306 1485 aaKnown RBP eCLIP11.75□□□□□ -0.531e-36■■■■■ 35.3
NCL-203ENST00000417652 FBLN2P98095 1184 aa11.74□□□□□ -0.53
NCL-203ENST00000417652 DNAJC5Q9H3Z4 198 aa11.74□□□□□ -0.53
NCL-203ENST00000417652 TARBP1Q13395 1621 aaKnown RBP11.73□□□□□ -0.53
NCL-203ENST00000417652 OSCARQ8IYS5 282 aa11.72□□□□□ -0.53
NCL-203ENST00000417652 TOP2BQ02880 1626 aa11.71□□□□□ -0.53
NCL-203ENST00000417652 SYNJ1O43426 1573 aa11.71□□□□□ -0.54
NCL-203ENST00000417652 EIF4G3O43432 1585 aaKnown RBP11.7□□□□□ -0.54
NCL-203ENST00000417652 BIVM-ERCC5R4GMW8 1640 aa11.69□□□□□ -0.54
NCL-203ENST00000417652 CHMP7Q8WUX9 453 aaPredicted RBP11.68□□□□□ -0.54
NCL-203ENST00000417652 TRIM41Q8WV44 630 aa11.67□□□□□ -0.54
NCL-203ENST00000417652 GAPVD1Q14C86 1478 aa11.66□□□□□ -0.54
NCL-203ENST00000417652 ABCA10Q8WWZ4 1543 aa11.65□□□□□ -0.54
NCL-203ENST00000417652 GRIN2BQ13224 1484 aa11.65□□□□□ -0.54
NCL-203ENST00000417652 WDR97A6NE52 1622 aa11.64□□□□□ -0.55
NCL-203ENST00000417652 SNAPC4Q5SXM2 1469 aa11.62□□□□□ -0.55
NCL-203ENST00000417652 MAGI1Q96QZ7 1491 aaPredicted RBP11.59□□□□□ -0.55
NCL-203ENST00000417652 PBRM1Q86U86 1689 aa11.59□□□□□ -0.55
NCL-203ENST00000417652 KIF27Q86VH2 1401 aa11.58□□□□□ -0.56
NCL-203ENST00000417652 ABCA5Q8WWZ7 1642 aa11.57□□□□□ -0.56
NCL-203ENST00000417652 CHD1O14646 1710 aa11.57□□□□□ -0.56
NCL-203ENST00000417652 SYNJ2O15056 1496 aa11.56□□□□□ -0.56
NCL-203ENST00000417652 MSH5O43196 834 aa11.53□□□□□ -0.56
NCL-203ENST00000417652 FHAD1B1AJZ9 1412 aa11.52□□□□□ -0.56
NCL-203ENST00000417652 ERICH3Q5RHP9 1530 aa11.52□□□□□ -0.57
NCL-203ENST00000417652 IGF1RP08069 1367 aa11.5□□□□□ -0.57
NCL-203ENST00000417652 GRIN2AQ12879 1464 aa11.48□□□□□ -0.57
NCL-203ENST00000417652 ADAMTS12P58397 1594 aa11.47□□□□□ -0.57
NCL-203ENST00000417652 CARMIL1Q5VZK9 1371 aa11.47□□□□□ -0.57
NCL-203ENST00000417652 FAM9AQ8IZU1 332 aaPredicted RBP11.46□□□□□ -0.57
NCL-203ENST00000417652 CUL7Q14999 1698 aa11.43□□□□□ -0.58
NCL-203ENST00000417652 CYB5RLQ6IPT4 315 aa11.43□□□□□ -0.58
NCL-203ENST00000417652 RUSC2Q8N2Y8 1516 aa11.43□□□□□ -0.58
NCL-203ENST00000417652 CSRNP3Q8WYN3 585 aa11.41□□□□□ -0.58
NCL-203ENST00000417652 ARHGEF11O15085 1522 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms