Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TMEM56-RWDD3S4R434 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TMEM56-RWDD3S4R434 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TMEM56-RWDD3S4R434 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TMEM56-RWDD3S4R434 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.97■□□□□ 0.95
TMEM56-RWDD3S4R434 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TMEM56-RWDD3S4R434 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TMEM56-RWDD3S4R434 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TMEM56-RWDD3S4R434 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TMEM56-RWDD3S4R434 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TMEM56-RWDD3S4R434 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC20.97■□□□□ 0.95
TMEM56-RWDD3S4R434 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TMEM56-RWDD3S4R434 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
TMEM56-RWDD3S4R434 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.96■□□□□ 0.95
TMEM56-RWDD3S4R434 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TMEM56-RWDD3S4R434 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
TMEM56-RWDD3S4R434 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TMEM56-RWDD3S4R434 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
TMEM56-RWDD3S4R434 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
TMEM56-RWDD3S4R434 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
TMEM56-RWDD3S4R434 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TMEM56-RWDD3S4R434 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TMEM56-RWDD3S4R434 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TMEM56-RWDD3S4R434 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TMEM56-RWDD3S4R434 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC20.93■□□□□ 0.94
TMEM56-RWDD3S4R434 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TMEM56-RWDD3S4R434 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TMEM56-RWDD3S4R434 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TMEM56-RWDD3S4R434 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TMEM56-RWDD3S4R434 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TMEM56-RWDD3S4R434 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC20.92■□□□□ 0.94
TMEM56-RWDD3S4R434 AC135731.1-201ENST00000569415 2548 ntBASIC20.92■□□□□ 0.94
TMEM56-RWDD3S4R434 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TMEM56-RWDD3S4R434 AC127502.1-201ENST00000399971 1502 ntBASIC20.91■□□□□ 0.94
TMEM56-RWDD3S4R434 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC20.91■□□□□ 0.94
TMEM56-RWDD3S4R434 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TMEM56-RWDD3S4R434 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TMEM56-RWDD3S4R434 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TMEM56-RWDD3S4R434 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TMEM56-RWDD3S4R434 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TMEM56-RWDD3S4R434 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC20.89■□□□□ 0.93
TMEM56-RWDD3S4R434 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TMEM56-RWDD3S4R434 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TMEM56-RWDD3S4R434 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TMEM56-RWDD3S4R434 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC20.88■□□□□ 0.93
TMEM56-RWDD3S4R434 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.88■□□□□ 0.93
TMEM56-RWDD3S4R434 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.88■□□□□ 0.93
TMEM56-RWDD3S4R434 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
TMEM56-RWDD3S4R434 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
TMEM56-RWDD3S4R434 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC20.88■□□□□ 0.93
TMEM56-RWDD3S4R434 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.88■□□□□ 0.93
TMEM56-RWDD3S4R434 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TMEM56-RWDD3S4R434 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC20.87■□□□□ 0.93
TMEM56-RWDD3S4R434 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC20.87■□□□□ 0.93
TMEM56-RWDD3S4R434 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TMEM56-RWDD3S4R434 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TMEM56-RWDD3S4R434 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TMEM56-RWDD3S4R434 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
TMEM56-RWDD3S4R434 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TMEM56-RWDD3S4R434 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TMEM56-RWDD3S4R434 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC20.85■□□□□ 0.93
TMEM56-RWDD3S4R434 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TMEM56-RWDD3S4R434 AL449106.1-201ENST00000608517 1980 ntBASIC20.85■□□□□ 0.93
TMEM56-RWDD3S4R434 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TMEM56-RWDD3S4R434 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TMEM56-RWDD3S4R434 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC20.84■□□□□ 0.93
TMEM56-RWDD3S4R434 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TMEM56-RWDD3S4R434 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TMEM56-RWDD3S4R434 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TMEM56-RWDD3S4R434 AC100797.4-201ENST00000631653 1827 ntBASIC20.83■□□□□ 0.93
TMEM56-RWDD3S4R434 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.83■□□□□ 0.93
TMEM56-RWDD3S4R434 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC20.83■□□□□ 0.93
TMEM56-RWDD3S4R434 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
TMEM56-RWDD3S4R434 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
TMEM56-RWDD3S4R434 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
TMEM56-RWDD3S4R434 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
TMEM56-RWDD3S4R434 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TMEM56-RWDD3S4R434 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TMEM56-RWDD3S4R434 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
TMEM56-RWDD3S4R434 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TMEM56-RWDD3S4R434 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
TMEM56-RWDD3S4R434 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
TMEM56-RWDD3S4R434 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TMEM56-RWDD3S4R434 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TMEM56-RWDD3S4R434 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
TMEM56-RWDD3S4R434 AP002414.2-202ENST00000590929 1450 ntBASIC20.8■□□□□ 0.92
TMEM56-RWDD3S4R434 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TMEM56-RWDD3S4R434 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
TMEM56-RWDD3S4R434 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TMEM56-RWDD3S4R434 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TMEM56-RWDD3S4R434 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TMEM56-RWDD3S4R434 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TMEM56-RWDD3S4R434 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
TMEM56-RWDD3S4R434 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TMEM56-RWDD3S4R434 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
TMEM56-RWDD3S4R434 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC20.77■□□□□ 0.92
TMEM56-RWDD3S4R434 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TMEM56-RWDD3S4R434 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TMEM56-RWDD3S4R434 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TMEM56-RWDD3S4R434 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms