Protein–RNA interactions for Protein: Q9Y2L9

LRCH1, Leucine-rich repeat and calponin homology domain-containing protein 1, humanhuman

Predictions only

Length 728 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH1Q9Y2L9 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC24.32■■□□□ 1.48
LRCH1Q9Y2L9 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
LRCH1Q9Y2L9 AC091060.1-201ENST00000623524 1766 ntBASIC24.31■■□□□ 1.48
LRCH1Q9Y2L9 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
LRCH1Q9Y2L9 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
LRCH1Q9Y2L9 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
LRCH1Q9Y2L9 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC24.31■■□□□ 1.48
LRCH1Q9Y2L9 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
LRCH1Q9Y2L9 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC24.3■■□□□ 1.48
LRCH1Q9Y2L9 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC24.3■■□□□ 1.48
LRCH1Q9Y2L9 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
LRCH1Q9Y2L9 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
LRCH1Q9Y2L9 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC24.3■■□□□ 1.48
LRCH1Q9Y2L9 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC24.29■■□□□ 1.48
LRCH1Q9Y2L9 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
LRCH1Q9Y2L9 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
LRCH1Q9Y2L9 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
LRCH1Q9Y2L9 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
LRCH1Q9Y2L9 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
LRCH1Q9Y2L9 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC24.28■■□□□ 1.48
LRCH1Q9Y2L9 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC24.28■■□□□ 1.48
LRCH1Q9Y2L9 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
LRCH1Q9Y2L9 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
LRCH1Q9Y2L9 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC24.27■■□□□ 1.48
LRCH1Q9Y2L9 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC24.27■■□□□ 1.48
LRCH1Q9Y2L9 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC24.27■■□□□ 1.48
LRCH1Q9Y2L9 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
LRCH1Q9Y2L9 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
LRCH1Q9Y2L9 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
LRCH1Q9Y2L9 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC24.26■■□□□ 1.47
LRCH1Q9Y2L9 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC24.26■■□□□ 1.47
LRCH1Q9Y2L9 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
LRCH1Q9Y2L9 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
LRCH1Q9Y2L9 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
LRCH1Q9Y2L9 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
LRCH1Q9Y2L9 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
LRCH1Q9Y2L9 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC24.24■■□□□ 1.47
LRCH1Q9Y2L9 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
LRCH1Q9Y2L9 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
LRCH1Q9Y2L9 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
LRCH1Q9Y2L9 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC24.23■■□□□ 1.47
LRCH1Q9Y2L9 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
LRCH1Q9Y2L9 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC24.22■■□□□ 1.47
LRCH1Q9Y2L9 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC24.22■■□□□ 1.47
LRCH1Q9Y2L9 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
LRCH1Q9Y2L9 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
LRCH1Q9Y2L9 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
LRCH1Q9Y2L9 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
LRCH1Q9Y2L9 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
LRCH1Q9Y2L9 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC24.2■■□□□ 1.46
LRCH1Q9Y2L9 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
LRCH1Q9Y2L9 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
LRCH1Q9Y2L9 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
LRCH1Q9Y2L9 PROC-203ENST00000409048 1586 ntTSL 5 BASIC24.18■■□□□ 1.46
LRCH1Q9Y2L9 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
LRCH1Q9Y2L9 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC24.18■■□□□ 1.46
LRCH1Q9Y2L9 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC24.18■■□□□ 1.46
LRCH1Q9Y2L9 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
LRCH1Q9Y2L9 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC24.18■■□□□ 1.46
LRCH1Q9Y2L9 RARA-203ENST00000394086 2008 ntTSL 2 BASIC24.18■■□□□ 1.46
LRCH1Q9Y2L9 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC24.18■■□□□ 1.46
LRCH1Q9Y2L9 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
LRCH1Q9Y2L9 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
LRCH1Q9Y2L9 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC24.17■■□□□ 1.46
LRCH1Q9Y2L9 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
LRCH1Q9Y2L9 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRCH1Q9Y2L9 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRCH1Q9Y2L9 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRCH1Q9Y2L9 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
LRCH1Q9Y2L9 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC24.16■■□□□ 1.46
LRCH1Q9Y2L9 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
LRCH1Q9Y2L9 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC24.15■■□□□ 1.46
LRCH1Q9Y2L9 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
LRCH1Q9Y2L9 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC24.14■■□□□ 1.46
LRCH1Q9Y2L9 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC24.14■■□□□ 1.46
LRCH1Q9Y2L9 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC24.14■■□□□ 1.45
LRCH1Q9Y2L9 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC24.14■■□□□ 1.45
LRCH1Q9Y2L9 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
LRCH1Q9Y2L9 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
LRCH1Q9Y2L9 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC24.14■■□□□ 1.45
LRCH1Q9Y2L9 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC24.13■■□□□ 1.45
LRCH1Q9Y2L9 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC24.13■■□□□ 1.45
LRCH1Q9Y2L9 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
LRCH1Q9Y2L9 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
LRCH1Q9Y2L9 AC145676.1-201ENST00000514988 2004 ntBASIC24.12■■□□□ 1.45
LRCH1Q9Y2L9 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC24.12■■□□□ 1.45
LRCH1Q9Y2L9 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
LRCH1Q9Y2L9 LINC01003-201ENST00000564834 1764 ntBASIC24.11■■□□□ 1.45
LRCH1Q9Y2L9 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
LRCH1Q9Y2L9 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC24.11■■□□□ 1.45
LRCH1Q9Y2L9 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
LRCH1Q9Y2L9 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC24.11■■□□□ 1.45
LRCH1Q9Y2L9 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
LRCH1Q9Y2L9 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
LRCH1Q9Y2L9 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC24.1■■□□□ 1.45
LRCH1Q9Y2L9 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
LRCH1Q9Y2L9 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
LRCH1Q9Y2L9 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
LRCH1Q9Y2L9 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
LRCH1Q9Y2L9 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms