Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC49.5■■■■■ 5.51
SHROOM4Q9ULL8 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC49.49■■■■■ 5.51
SHROOM4Q9ULL8 AC008813.1-201ENST00000536597 885 ntBASIC49.48■■■■■ 5.51
SHROOM4Q9ULL8 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC49.47■■■■■ 5.51
SHROOM4Q9ULL8 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC49.47■■■■■ 5.51
SHROOM4Q9ULL8 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC49.47■■■■■ 5.51
SHROOM4Q9ULL8 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC49.47■■■■■ 5.51
SHROOM4Q9ULL8 LINC00273-201ENST00000539813 1452 ntBASIC49.46■■■■■ 5.51
SHROOM4Q9ULL8 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC49.44■■■■■ 5.51
SHROOM4Q9ULL8 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC49.43■■■■■ 5.5
SHROOM4Q9ULL8 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC49.42■■■■■ 5.5
SHROOM4Q9ULL8 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC49.42■■■■■ 5.5
SHROOM4Q9ULL8 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC49.42■■■■■ 5.5
SHROOM4Q9ULL8 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC49.42■■■■■ 5.5
SHROOM4Q9ULL8 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC49.42■■■■■ 5.5
SHROOM4Q9ULL8 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC49.41■■■■■ 5.5
SHROOM4Q9ULL8 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC49.4■■■■■ 5.5
SHROOM4Q9ULL8 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC49.4■■■■■ 5.5
SHROOM4Q9ULL8 AL033527.3-201ENST00000566366 1196 ntBASIC49.4■■■■■ 5.5
SHROOM4Q9ULL8 GFER-205ENST00000569451 517 ntTSL 5 BASIC49.4■■■■■ 5.5
SHROOM4Q9ULL8 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC49.4■■■■■ 5.5
SHROOM4Q9ULL8 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC49.39■■■■■ 5.5
SHROOM4Q9ULL8 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC49.39■■■■■ 5.5
SHROOM4Q9ULL8 AC022413.1-201ENST00000624602 984 ntBASIC49.38■■■■■ 5.5
SHROOM4Q9ULL8 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC49.38■■■■■ 5.5
SHROOM4Q9ULL8 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC49.37■■■■■ 5.49
SHROOM4Q9ULL8 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC49.37■■■■■ 5.49
SHROOM4Q9ULL8 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC49.37■■■■■ 5.49
SHROOM4Q9ULL8 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC49.37■■■■■ 5.49
SHROOM4Q9ULL8 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC49.37■■■■■ 5.49
SHROOM4Q9ULL8 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC49.36■■■■■ 5.49
SHROOM4Q9ULL8 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC49.36■■■■■ 5.49
SHROOM4Q9ULL8 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC49.35■■■■■ 5.49
SHROOM4Q9ULL8 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC49.35■■■■■ 5.49
SHROOM4Q9ULL8 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC49.35■■■■■ 5.49
SHROOM4Q9ULL8 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC49.35■■■■■ 5.49
SHROOM4Q9ULL8 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC49.34■■■■■ 5.49
SHROOM4Q9ULL8 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC49.34■■■■■ 5.49
SHROOM4Q9ULL8 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC49.33■■■■■ 5.49
SHROOM4Q9ULL8 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC49.32■■■■■ 5.49
SHROOM4Q9ULL8 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC49.32■■■■■ 5.49
SHROOM4Q9ULL8 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC49.31■■■■■ 5.48
SHROOM4Q9ULL8 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC49.31■■■■■ 5.48
SHROOM4Q9ULL8 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC49.29■■■■■ 5.48
SHROOM4Q9ULL8 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC49.29■■■■■ 5.48
SHROOM4Q9ULL8 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC49.29■■■■■ 5.48
SHROOM4Q9ULL8 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC49.28■■■■■ 5.48
SHROOM4Q9ULL8 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC49.27■■■■■ 5.48
SHROOM4Q9ULL8 U85056.1-201ENST00000616429 682 ntBASIC49.27■■■■■ 5.48
SHROOM4Q9ULL8 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC49.26■■■■■ 5.48
SHROOM4Q9ULL8 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC49.26■■■■■ 5.48
SHROOM4Q9ULL8 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC49.25■■■■■ 5.48
SHROOM4Q9ULL8 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC49.25■■■■■ 5.47
SHROOM4Q9ULL8 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC49.25■■■■■ 5.47
SHROOM4Q9ULL8 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC49.25■■■■■ 5.47
SHROOM4Q9ULL8 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC49.24■■■■■ 5.47
SHROOM4Q9ULL8 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC49.22■■■■■ 5.47
SHROOM4Q9ULL8 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC49.2■■■■■ 5.47
SHROOM4Q9ULL8 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC49.2■■■■■ 5.47
SHROOM4Q9ULL8 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC49.19■■■■■ 5.47
SHROOM4Q9ULL8 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC49.19■■■■■ 5.47
SHROOM4Q9ULL8 HYI-213ENST00000583037 1322 ntTSL 5 BASIC49.18■■■■■ 5.46
SHROOM4Q9ULL8 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC49.16■■■■■ 5.46
SHROOM4Q9ULL8 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC49.16■■■■■ 5.46
SHROOM4Q9ULL8 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC49.15■■■■■ 5.46
SHROOM4Q9ULL8 AC127502.1-201ENST00000399971 1502 ntBASIC49.15■■■■■ 5.46
SHROOM4Q9ULL8 TSPY13P-201ENST00000338964 914 ntBASIC49.15■■■■■ 5.46
SHROOM4Q9ULL8 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC49.14■■■■■ 5.46
SHROOM4Q9ULL8 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC49.13■■■■■ 5.46
SHROOM4Q9ULL8 AL135925.1-201ENST00000605920 1701 ntBASIC49.13■■■■■ 5.45
SHROOM4Q9ULL8 RARRES2P1-201ENST00000474487 481 ntBASIC49.12■■■■■ 5.45
SHROOM4Q9ULL8 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC49.12■■■■■ 5.45
SHROOM4Q9ULL8 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC49.1■■■■■ 5.45
SHROOM4Q9ULL8 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC49.1■■■■■ 5.45
SHROOM4Q9ULL8 AC060814.1-201ENST00000554326 538 ntBASIC49.1■■■■■ 5.45
SHROOM4Q9ULL8 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC49.1■■■■■ 5.45
SHROOM4Q9ULL8 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC49.09■■■■■ 5.45
SHROOM4Q9ULL8 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC49.09■■■■■ 5.45
SHROOM4Q9ULL8 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC49.09■■■■■ 5.45
SHROOM4Q9ULL8 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC49.08■■■■■ 5.45
SHROOM4Q9ULL8 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC49.08■■■■■ 5.45
SHROOM4Q9ULL8 KRT18P60-201ENST00000312876 1297 ntBASIC49.07■■■■■ 5.45
SHROOM4Q9ULL8 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC49.07■■■■■ 5.45
SHROOM4Q9ULL8 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC49.05■■■■■ 5.44
SHROOM4Q9ULL8 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC49.05■■■■■ 5.44
SHROOM4Q9ULL8 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC49.03■■■■■ 5.44
SHROOM4Q9ULL8 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC49.03■■■■■ 5.44
SHROOM4Q9ULL8 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC49.01■■■■■ 5.44
SHROOM4Q9ULL8 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC49.01■■■■■ 5.44
SHROOM4Q9ULL8 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC49■■■■■ 5.44
SHROOM4Q9ULL8 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC48.99■■■■■ 5.43
SHROOM4Q9ULL8 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC48.99■■■■■ 5.43
SHROOM4Q9ULL8 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC48.98■■■■■ 5.43
SHROOM4Q9ULL8 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC48.97■■■■■ 5.43
SHROOM4Q9ULL8 AC004987.1-201ENST00000428627 508 ntBASIC48.97■■■■■ 5.43
SHROOM4Q9ULL8 ATP5G2P3-201ENST00000429083 425 ntBASIC48.97■■■■■ 5.43
SHROOM4Q9ULL8 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC48.97■■■■■ 5.43
SHROOM4Q9ULL8 WHAMMP2-203ENST00000563942 1603 ntBASIC48.97■■■■■ 5.43
SHROOM4Q9ULL8 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC48.96■■■■■ 5.43
SHROOM4Q9ULL8 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC48.96■■■■■ 5.43
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms