Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
UBQLN3Q9H347 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
UBQLN3Q9H347 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
UBQLN3Q9H347 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
UBQLN3Q9H347 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
UBQLN3Q9H347 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.72■■□□□ 1.39
UBQLN3Q9H347 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
UBQLN3Q9H347 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
UBQLN3Q9H347 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC23.71■■□□□ 1.39
UBQLN3Q9H347 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
UBQLN3Q9H347 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
UBQLN3Q9H347 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
UBQLN3Q9H347 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC23.7■■□□□ 1.38
UBQLN3Q9H347 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC23.69■■□□□ 1.38
UBQLN3Q9H347 PVT1-219ENST00000523427 938 ntTSL 3 BASIC23.69■■□□□ 1.38
UBQLN3Q9H347 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
UBQLN3Q9H347 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
UBQLN3Q9H347 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
UBQLN3Q9H347 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
UBQLN3Q9H347 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
UBQLN3Q9H347 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
UBQLN3Q9H347 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC23.66■■□□□ 1.38
UBQLN3Q9H347 LINC01971-201ENST00000617888 1048 ntBASIC23.66■■□□□ 1.38
UBQLN3Q9H347 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
UBQLN3Q9H347 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
UBQLN3Q9H347 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
UBQLN3Q9H347 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
UBQLN3Q9H347 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
UBQLN3Q9H347 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC23.64■■□□□ 1.38
UBQLN3Q9H347 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC23.64■■□□□ 1.38
UBQLN3Q9H347 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
UBQLN3Q9H347 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.38
UBQLN3Q9H347 CALM3-209ENST00000597743 577 ntTSL 4 BASIC23.64■■□□□ 1.37
UBQLN3Q9H347 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
UBQLN3Q9H347 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
UBQLN3Q9H347 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
UBQLN3Q9H347 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC23.63■■□□□ 1.37
UBQLN3Q9H347 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
UBQLN3Q9H347 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
UBQLN3Q9H347 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
UBQLN3Q9H347 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC23.62■■□□□ 1.37
UBQLN3Q9H347 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
UBQLN3Q9H347 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
UBQLN3Q9H347 AC127502.1-201ENST00000399971 1502 ntBASIC23.61■■□□□ 1.37
UBQLN3Q9H347 LINC00273-201ENST00000539813 1452 ntBASIC23.61■■□□□ 1.37
UBQLN3Q9H347 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
UBQLN3Q9H347 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
UBQLN3Q9H347 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
UBQLN3Q9H347 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
UBQLN3Q9H347 DRD5P2-201ENST00000421395 2012 ntBASIC23.6■■□□□ 1.37
UBQLN3Q9H347 MACF1-219ENST00000484793 834 ntTSL 2 BASIC23.59■■□□□ 1.37
UBQLN3Q9H347 DUX4L11-201ENST00000611504 1267 ntBASIC23.59■■□□□ 1.37
UBQLN3Q9H347 DUX4L12-201ENST00000614593 1267 ntBASIC23.59■■□□□ 1.37
UBQLN3Q9H347 DUX4L14-201ENST00000621227 1267 ntBASIC23.59■■□□□ 1.37
UBQLN3Q9H347 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
UBQLN3Q9H347 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
UBQLN3Q9H347 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
UBQLN3Q9H347 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC23.58■■□□□ 1.37
UBQLN3Q9H347 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC23.57■■□□□ 1.36
UBQLN3Q9H347 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
UBQLN3Q9H347 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
UBQLN3Q9H347 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC23.56■■□□□ 1.36
UBQLN3Q9H347 RNF166-209ENST00000567844 633 ntTSL 5 BASIC23.56■■□□□ 1.36
UBQLN3Q9H347 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.56■■□□□ 1.36
UBQLN3Q9H347 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC23.56■■□□□ 1.36
UBQLN3Q9H347 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC23.55■■□□□ 1.36
UBQLN3Q9H347 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC23.55■■□□□ 1.36
UBQLN3Q9H347 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC23.55■■□□□ 1.36
UBQLN3Q9H347 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC23.55■■□□□ 1.36
UBQLN3Q9H347 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC23.55■■□□□ 1.36
UBQLN3Q9H347 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
UBQLN3Q9H347 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC23.54■■□□□ 1.36
UBQLN3Q9H347 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
UBQLN3Q9H347 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC23.53■■□□□ 1.36
UBQLN3Q9H347 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC23.53■■□□□ 1.36
UBQLN3Q9H347 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
UBQLN3Q9H347 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC23.52■■□□□ 1.36
UBQLN3Q9H347 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC23.52■■□□□ 1.36
UBQLN3Q9H347 AGPS-202ENST00000409888 815 ntTSL 4 BASIC23.52■■□□□ 1.36
UBQLN3Q9H347 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
UBQLN3Q9H347 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
UBQLN3Q9H347 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
UBQLN3Q9H347 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
UBQLN3Q9H347 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC23.52■■□□□ 1.36
UBQLN3Q9H347 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.35
UBQLN3Q9H347 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
UBQLN3Q9H347 MIR3648-2-201ENST00000581792 180 ntBASIC23.51■■□□□ 1.35
UBQLN3Q9H347 MIR3648-1-201ENST00000615959 180 ntBASIC23.51■■□□□ 1.35
UBQLN3Q9H347 HLA-V-202ENST00000446817 847 ntBASIC23.5■■□□□ 1.35
UBQLN3Q9H347 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.5■■□□□ 1.35
UBQLN3Q9H347 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC23.5■■□□□ 1.35
UBQLN3Q9H347 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC23.5■■□□□ 1.35
UBQLN3Q9H347 MBP-237ENST00000579129 1052 ntTSL 5 BASIC23.5■■□□□ 1.35
UBQLN3Q9H347 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
UBQLN3Q9H347 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC23.49■■□□□ 1.35
UBQLN3Q9H347 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC23.49■■□□□ 1.35
UBQLN3Q9H347 CR559946.2-201ENST00000623684 991 ntBASIC23.49■■□□□ 1.35
UBQLN3Q9H347 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
UBQLN3Q9H347 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
UBQLN3Q9H347 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms