Protein–RNA interactions for Protein: Q96HC4

PDLIM5, PDZ and LIM domain protein 5, humanhuman

Known RBP Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5Q96HC4 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PDLIM5Q96HC4 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
PDLIM5Q96HC4 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC25.19■■□□□ 1.62
PDLIM5Q96HC4 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
PDLIM5Q96HC4 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
PDLIM5Q96HC4 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC25.19■■□□□ 1.62
PDLIM5Q96HC4 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC25.18■■□□□ 1.62
PDLIM5Q96HC4 AC100797.4-201ENST00000631653 1827 ntBASIC25.18■■□□□ 1.62
PDLIM5Q96HC4 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
PDLIM5Q96HC4 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC25.17■■□□□ 1.62
PDLIM5Q96HC4 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
PDLIM5Q96HC4 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PDLIM5Q96HC4 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
PDLIM5Q96HC4 LINC00273-201ENST00000539813 1452 ntBASIC25.16■■□□□ 1.62
PDLIM5Q96HC4 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC25.16■■□□□ 1.62
PDLIM5Q96HC4 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PDLIM5Q96HC4 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PDLIM5Q96HC4 MEST-211ENST00000437945 1455 ntTSL 5 BASIC25.15■■□□□ 1.62
PDLIM5Q96HC4 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
PDLIM5Q96HC4 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC25.15■■□□□ 1.62
PDLIM5Q96HC4 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC25.15■■□□□ 1.62
PDLIM5Q96HC4 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC25.14■■□□□ 1.62
PDLIM5Q96HC4 AC044849.2-201ENST00000606596 710 ntBASIC25.14■■□□□ 1.62
PDLIM5Q96HC4 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
PDLIM5Q96HC4 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC25.14■■□□□ 1.61
PDLIM5Q96HC4 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
PDLIM5Q96HC4 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
PDLIM5Q96HC4 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC25.13■■□□□ 1.61
PDLIM5Q96HC4 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
PDLIM5Q96HC4 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
PDLIM5Q96HC4 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
PDLIM5Q96HC4 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC25.12■■□□□ 1.61
PDLIM5Q96HC4 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC25.11■■□□□ 1.61
PDLIM5Q96HC4 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PDLIM5Q96HC4 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC25.11■■□□□ 1.61
PDLIM5Q96HC4 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC25.11■■□□□ 1.61
PDLIM5Q96HC4 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
PDLIM5Q96HC4 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
PDLIM5Q96HC4 CIB2-204ENST00000557846 934 ntTSL 3 BASIC25.1■■□□□ 1.61
PDLIM5Q96HC4 WHAMMP2-203ENST00000563942 1603 ntBASIC25.1■■□□□ 1.61
PDLIM5Q96HC4 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
PDLIM5Q96HC4 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC25.09■■□□□ 1.61
PDLIM5Q96HC4 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
PDLIM5Q96HC4 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
PDLIM5Q96HC4 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PDLIM5Q96HC4 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PDLIM5Q96HC4 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
PDLIM5Q96HC4 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
PDLIM5Q96HC4 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PDLIM5Q96HC4 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
PDLIM5Q96HC4 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC25.07■■□□□ 1.6
PDLIM5Q96HC4 AP002414.2-202ENST00000590929 1450 ntBASIC25.07■■□□□ 1.6
PDLIM5Q96HC4 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
PDLIM5Q96HC4 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
PDLIM5Q96HC4 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
PDLIM5Q96HC4 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC25.06■■□□□ 1.6
PDLIM5Q96HC4 CALM3-209ENST00000597743 577 ntTSL 4 BASIC25.06■■□□□ 1.6
PDLIM5Q96HC4 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
PDLIM5Q96HC4 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC25.05■■□□□ 1.6
PDLIM5Q96HC4 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC25.05■■□□□ 1.6
PDLIM5Q96HC4 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
PDLIM5Q96HC4 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PDLIM5Q96HC4 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
PDLIM5Q96HC4 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
PDLIM5Q96HC4 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
PDLIM5Q96HC4 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
PDLIM5Q96HC4 BX255925.1-201ENST00000566954 1854 ntBASIC25.03■■□□□ 1.6
PDLIM5Q96HC4 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
PDLIM5Q96HC4 BOD1-206ENST00000480951 814 ntTSL 2 BASIC25.03■■□□□ 1.6
PDLIM5Q96HC4 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC25.03■■□□□ 1.6
PDLIM5Q96HC4 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC25.03■■□□□ 1.6
PDLIM5Q96HC4 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
PDLIM5Q96HC4 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC25.02■■□□□ 1.6
PDLIM5Q96HC4 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC25.02■■□□□ 1.6
PDLIM5Q96HC4 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC25.02■■□□□ 1.6
PDLIM5Q96HC4 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC25.01■■□□□ 1.59
PDLIM5Q96HC4 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC25.01■■□□□ 1.59
PDLIM5Q96HC4 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC24.99■■□□□ 1.59
PDLIM5Q96HC4 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC24.98■■□□□ 1.59
PDLIM5Q96HC4 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PDLIM5Q96HC4 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC24.98■■□□□ 1.59
PDLIM5Q96HC4 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
PDLIM5Q96HC4 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PDLIM5Q96HC4 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
PDLIM5Q96HC4 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
PDLIM5Q96HC4 LINC01003-201ENST00000564834 1764 ntBASIC24.97■■□□□ 1.59
PDLIM5Q96HC4 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC24.97■■□□□ 1.59
PDLIM5Q96HC4 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
PDLIM5Q96HC4 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PDLIM5Q96HC4 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
PDLIM5Q96HC4 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC24.96■■□□□ 1.59
PDLIM5Q96HC4 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC24.96■■□□□ 1.59
PDLIM5Q96HC4 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
PDLIM5Q96HC4 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
PDLIM5Q96HC4 SHF-208ENST00000560734 1731 ntTSL 3 BASIC24.95■■□□□ 1.58
PDLIM5Q96HC4 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PDLIM5Q96HC4 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PDLIM5Q96HC4 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
PDLIM5Q96HC4 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC24.93■■□□□ 1.58
PDLIM5Q96HC4 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms