Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CSPG4Q6UVK1 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CSPG4Q6UVK1 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CSPG4Q6UVK1 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
CSPG4Q6UVK1 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.44■■□□□ 1.02
CSPG4Q6UVK1 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
CSPG4Q6UVK1 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CSPG4Q6UVK1 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
CSPG4Q6UVK1 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.43■■□□□ 1.02
CSPG4Q6UVK1 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CSPG4Q6UVK1 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CSPG4Q6UVK1 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CSPG4Q6UVK1 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CSPG4Q6UVK1 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.41■■□□□ 1.02
CSPG4Q6UVK1 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
CSPG4Q6UVK1 AC060814.1-201ENST00000554326 538 ntBASIC21.41■■□□□ 1.02
CSPG4Q6UVK1 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.41■■□□□ 1.02
CSPG4Q6UVK1 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CSPG4Q6UVK1 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CSPG4Q6UVK1 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CSPG4Q6UVK1 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CSPG4Q6UVK1 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.4■■□□□ 1.02
CSPG4Q6UVK1 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CSPG4Q6UVK1 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CSPG4Q6UVK1 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.4■■□□□ 1.02
CSPG4Q6UVK1 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CSPG4Q6UVK1 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CSPG4Q6UVK1 ATP5G2P3-201ENST00000429083 425 ntBASIC21.39■■□□□ 1.02
CSPG4Q6UVK1 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
CSPG4Q6UVK1 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC21.39■■□□□ 1.01
CSPG4Q6UVK1 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CSPG4Q6UVK1 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CSPG4Q6UVK1 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CSPG4Q6UVK1 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC21.38■■□□□ 1.01
CSPG4Q6UVK1 AC004987.1-201ENST00000428627 508 ntBASIC21.38■■□□□ 1.01
CSPG4Q6UVK1 AL035685.1-201ENST00000636663 812 ntBASIC21.38■■□□□ 1.01
CSPG4Q6UVK1 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.38■■□□□ 1.01
CSPG4Q6UVK1 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CSPG4Q6UVK1 AC148477.6-201ENST00000623746 465 ntBASIC21.37■■□□□ 1.01
CSPG4Q6UVK1 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CSPG4Q6UVK1 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
CSPG4Q6UVK1 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CSPG4Q6UVK1 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CSPG4Q6UVK1 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
CSPG4Q6UVK1 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC21.35■■□□□ 1.01
CSPG4Q6UVK1 U85056.1-201ENST00000616429 682 ntBASIC21.35■■□□□ 1.01
CSPG4Q6UVK1 AL161658.1-201ENST00000623641 1967 ntBASIC21.34■■□□□ 1.01
CSPG4Q6UVK1 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CSPG4Q6UVK1 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CSPG4Q6UVK1 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.33■■□□□ 1
CSPG4Q6UVK1 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CSPG4Q6UVK1 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.33■■□□□ 1
CSPG4Q6UVK1 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
CSPG4Q6UVK1 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CSPG4Q6UVK1 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CSPG4Q6UVK1 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
CSPG4Q6UVK1 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.32■■□□□ 1
CSPG4Q6UVK1 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC21.32■■□□□ 1
CSPG4Q6UVK1 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC21.31■■□□□ 1
CSPG4Q6UVK1 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.31■■□□□ 1
CSPG4Q6UVK1 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC21.3■■□□□ 1
CSPG4Q6UVK1 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC21.3■■□□□ 1
CSPG4Q6UVK1 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC21.29■■□□□ 1
CSPG4Q6UVK1 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC21.29■■□□□ 1
CSPG4Q6UVK1 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
CSPG4Q6UVK1 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
CSPG4Q6UVK1 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
CSPG4Q6UVK1 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CSPG4Q6UVK1 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CSPG4Q6UVK1 AC092296.2-201ENST00000589470 999 ntBASIC21.29■■□□□ 1
CSPG4Q6UVK1 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CSPG4Q6UVK1 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC21.27■■□□□ 1
CSPG4Q6UVK1 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
CSPG4Q6UVK1 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CSPG4Q6UVK1 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
CSPG4Q6UVK1 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CSPG4Q6UVK1 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CSPG4Q6UVK1 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CSPG4Q6UVK1 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC21.26■□□□□ 0.99
CSPG4Q6UVK1 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CSPG4Q6UVK1 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
CSPG4Q6UVK1 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CSPG4Q6UVK1 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CSPG4Q6UVK1 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CSPG4Q6UVK1 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CSPG4Q6UVK1 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC21.23■□□□□ 0.99
CSPG4Q6UVK1 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CSPG4Q6UVK1 MIR935-201ENST00000401179 91 ntBASIC21.23■□□□□ 0.99
CSPG4Q6UVK1 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC21.23■□□□□ 0.99
CSPG4Q6UVK1 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.23■□□□□ 0.99
CSPG4Q6UVK1 AL451085.2-201ENST00000605085 799 ntBASIC21.23■□□□□ 0.99
CSPG4Q6UVK1 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC21.23■□□□□ 0.99
CSPG4Q6UVK1 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CSPG4Q6UVK1 WHAMMP2-203ENST00000563942 1603 ntBASIC21.23■□□□□ 0.99
CSPG4Q6UVK1 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CSPG4Q6UVK1 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CSPG4Q6UVK1 AC135983.2-203ENST00000454486 1613 ntBASIC21.22■□□□□ 0.99
CSPG4Q6UVK1 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC21.22■□□□□ 0.99
CSPG4Q6UVK1 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.21■□□□□ 0.99
CSPG4Q6UVK1 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms