Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PDLIM4P50479 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC21.76■■□□□ 1.07
PDLIM4P50479 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC21.76■■□□□ 1.07
PDLIM4P50479 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
PDLIM4P50479 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC21.76■■□□□ 1.07
PDLIM4P50479 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC21.75■■□□□ 1.07
PDLIM4P50479 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC21.75■■□□□ 1.07
PDLIM4P50479 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
PDLIM4P50479 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
PDLIM4P50479 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
PDLIM4P50479 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.74■■□□□ 1.07
PDLIM4P50479 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC21.74■■□□□ 1.07
PDLIM4P50479 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC21.74■■□□□ 1.07
PDLIM4P50479 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
PDLIM4P50479 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PDLIM4P50479 AC127502.1-201ENST00000399971 1502 ntBASIC21.74■■□□□ 1.07
PDLIM4P50479 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
PDLIM4P50479 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
PDLIM4P50479 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PDLIM4P50479 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
PDLIM4P50479 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PDLIM4P50479 SRP68-213ENST00000629930 165 ntTSL 5 BASIC21.73■■□□□ 1.07
PDLIM4P50479 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
PDLIM4P50479 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
PDLIM4P50479 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PDLIM4P50479 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
PDLIM4P50479 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
PDLIM4P50479 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
PDLIM4P50479 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
PDLIM4P50479 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
PDLIM4P50479 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
PDLIM4P50479 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC21.71■■□□□ 1.07
PDLIM4P50479 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC21.71■■□□□ 1.07
PDLIM4P50479 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
PDLIM4P50479 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC21.7■■□□□ 1.06
PDLIM4P50479 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
PDLIM4P50479 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC21.7■■□□□ 1.06
PDLIM4P50479 AC008813.1-201ENST00000536597 885 ntBASIC21.68■■□□□ 1.06
PDLIM4P50479 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PDLIM4P50479 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PDLIM4P50479 AL135925.1-201ENST00000605920 1701 ntBASIC21.67■■□□□ 1.06
PDLIM4P50479 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
PDLIM4P50479 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC21.66■■□□□ 1.06
PDLIM4P50479 AC135983.2-203ENST00000454486 1613 ntBASIC21.66■■□□□ 1.06
PDLIM4P50479 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
PDLIM4P50479 GPX1-201ENST00000419349 1106 ntBASIC21.65■■□□□ 1.06
PDLIM4P50479 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC21.65■■□□□ 1.06
PDLIM4P50479 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
PDLIM4P50479 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
PDLIM4P50479 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
PDLIM4P50479 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
PDLIM4P50479 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PDLIM4P50479 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
PDLIM4P50479 WHAMMP2-203ENST00000563942 1603 ntBASIC21.63■■□□□ 1.05
PDLIM4P50479 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PDLIM4P50479 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PDLIM4P50479 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.63■■□□□ 1.05
PDLIM4P50479 CEP120-209ENST00000515110 606 ntTSL 3 BASIC21.63■■□□□ 1.05
PDLIM4P50479 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC21.63■■□□□ 1.05
PDLIM4P50479 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PDLIM4P50479 RARRES2P2-201ENST00000394842 485 ntBASIC21.62■■□□□ 1.05
PDLIM4P50479 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PDLIM4P50479 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC21.62■■□□□ 1.05
PDLIM4P50479 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PDLIM4P50479 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PDLIM4P50479 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
PDLIM4P50479 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PDLIM4P50479 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PDLIM4P50479 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
PDLIM4P50479 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PDLIM4P50479 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC21.6■■□□□ 1.05
PDLIM4P50479 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
PDLIM4P50479 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
PDLIM4P50479 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC21.6■■□□□ 1.05
PDLIM4P50479 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
PDLIM4P50479 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
PDLIM4P50479 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
PDLIM4P50479 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
PDLIM4P50479 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC21.59■■□□□ 1.05
PDLIM4P50479 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
PDLIM4P50479 RNF126P1-201ENST00000567452 1320 ntBASIC21.57■■□□□ 1.04
PDLIM4P50479 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PDLIM4P50479 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC21.57■■□□□ 1.04
PDLIM4P50479 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.57■■□□□ 1.04
PDLIM4P50479 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PDLIM4P50479 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PDLIM4P50479 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PDLIM4P50479 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
PDLIM4P50479 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PDLIM4P50479 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PDLIM4P50479 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PDLIM4P50479 AC110285.7-201ENST00000624417 1536 ntBASIC21.55■■□□□ 1.04
PDLIM4P50479 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PDLIM4P50479 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC21.55■■□□□ 1.04
PDLIM4P50479 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PDLIM4P50479 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC21.55■■□□□ 1.04
PDLIM4P50479 ABHD17AP5-201ENST00000580133 923 ntBASIC21.55■■□□□ 1.04
PDLIM4P50479 AC022413.1-201ENST00000624602 984 ntBASIC21.55■■□□□ 1.04
PDLIM4P50479 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PDLIM4P50479 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms