Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
HMGB1P09429 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
HMGB1P09429 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC30.37■■■□□ 2.45
HMGB1P09429 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
HMGB1P09429 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
HMGB1P09429 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
HMGB1P09429 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC30.37■■■□□ 2.45
HMGB1P09429 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC30.36■■■□□ 2.45
HMGB1P09429 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC30.36■■■□□ 2.45
HMGB1P09429 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC30.36■■■□□ 2.45
HMGB1P09429 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
HMGB1P09429 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC30.36■■■□□ 2.45
HMGB1P09429 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
HMGB1P09429 MEST-211ENST00000437945 1455 ntTSL 5 BASIC30.35■■■□□ 2.45
HMGB1P09429 AC100797.4-201ENST00000631653 1827 ntBASIC30.34■■■□□ 2.45
HMGB1P09429 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
HMGB1P09429 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
HMGB1P09429 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC30.34■■■□□ 2.45
HMGB1P09429 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
HMGB1P09429 PROC-203ENST00000409048 1586 ntTSL 5 BASIC30.33■■■□□ 2.45
HMGB1P09429 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC30.33■■■□□ 2.45
HMGB1P09429 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
HMGB1P09429 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC30.33■■■□□ 2.45
HMGB1P09429 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC30.33■■■□□ 2.45
HMGB1P09429 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
HMGB1P09429 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC30.32■■■□□ 2.44
HMGB1P09429 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC30.32■■■□□ 2.44
HMGB1P09429 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
HMGB1P09429 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30.31■■■□□ 2.44
HMGB1P09429 WHAMMP2-203ENST00000563942 1603 ntBASIC30.3■■■□□ 2.44
HMGB1P09429 RPS2P35-201ENST00000443417 897 ntBASIC30.3■■■□□ 2.44
HMGB1P09429 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC30.3■■■□□ 2.44
HMGB1P09429 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
HMGB1P09429 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
HMGB1P09429 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC30.29■■■□□ 2.44
HMGB1P09429 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
HMGB1P09429 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC30.27■■■□□ 2.44
HMGB1P09429 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC30.27■■■□□ 2.44
HMGB1P09429 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC30.27■■■□□ 2.44
HMGB1P09429 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC30.26■■■□□ 2.44
HMGB1P09429 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC30.26■■■□□ 2.44
HMGB1P09429 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC30.26■■■□□ 2.44
HMGB1P09429 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC30.26■■■□□ 2.43
HMGB1P09429 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC30.26■■■□□ 2.43
HMGB1P09429 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
HMGB1P09429 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
HMGB1P09429 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
HMGB1P09429 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
HMGB1P09429 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
HMGB1P09429 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
HMGB1P09429 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC30.24■■■□□ 2.43
HMGB1P09429 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC30.23■■■□□ 2.43
HMGB1P09429 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
HMGB1P09429 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC30.23■■■□□ 2.43
HMGB1P09429 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
HMGB1P09429 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
HMGB1P09429 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC30.23■■■□□ 2.43
HMGB1P09429 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC30.22■■■□□ 2.43
HMGB1P09429 DUX4L29-201ENST00000425409 679 ntBASIC30.22■■■□□ 2.43
HMGB1P09429 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC30.22■■■□□ 2.43
HMGB1P09429 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC30.22■■■□□ 2.43
HMGB1P09429 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
HMGB1P09429 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
HMGB1P09429 AC021231.2-201ENST00000594613 730 ntBASIC30.21■■■□□ 2.43
HMGB1P09429 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.43
HMGB1P09429 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC30.2■■■□□ 2.43
HMGB1P09429 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
HMGB1P09429 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC30.19■■■□□ 2.42
HMGB1P09429 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
HMGB1P09429 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
HMGB1P09429 AP002414.2-202ENST00000590929 1450 ntBASIC30.19■■■□□ 2.42
HMGB1P09429 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
HMGB1P09429 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC30.18■■■□□ 2.42
HMGB1P09429 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
HMGB1P09429 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC30.15■■■□□ 2.42
HMGB1P09429 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
HMGB1P09429 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC30.15■■■□□ 2.42
HMGB1P09429 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.42
HMGB1P09429 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
HMGB1P09429 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
HMGB1P09429 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
HMGB1P09429 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
HMGB1P09429 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
HMGB1P09429 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC30.12■■■□□ 2.41
HMGB1P09429 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
HMGB1P09429 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC30.11■■■□□ 2.41
HMGB1P09429 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC30.11■■■□□ 2.41
HMGB1P09429 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
HMGB1P09429 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC30.1■■■□□ 2.41
HMGB1P09429 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC30.1■■■□□ 2.41
HMGB1P09429 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
HMGB1P09429 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC30.09■■■□□ 2.41
HMGB1P09429 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
HMGB1P09429 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC30.08■■■□□ 2.41
HMGB1P09429 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC30.08■■■□□ 2.41
HMGB1P09429 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
HMGB1P09429 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
HMGB1P09429 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC30.07■■■□□ 2.4
HMGB1P09429 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC30.07■■■□□ 2.4
HMGB1P09429 HGH1-207ENST00000628266 258 ntTSL 5 BASIC30.07■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms