Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC29.87■■■□□ 2.37
CDKL5O76039 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
CDKL5O76039 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
CDKL5O76039 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC29.87■■■□□ 2.37
CDKL5O76039 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC29.87■■■□□ 2.37
CDKL5O76039 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
CDKL5O76039 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
CDKL5O76039 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
CDKL5O76039 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC29.86■■■□□ 2.37
CDKL5O76039 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
CDKL5O76039 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC29.85■■■□□ 2.37
CDKL5O76039 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC29.85■■■□□ 2.37
CDKL5O76039 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC29.85■■■□□ 2.37
CDKL5O76039 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
CDKL5O76039 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
CDKL5O76039 RPS2P35-201ENST00000443417 897 ntBASIC29.84■■■□□ 2.37
CDKL5O76039 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
CDKL5O76039 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
CDKL5O76039 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
CDKL5O76039 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC29.83■■■□□ 2.37
CDKL5O76039 MEST-211ENST00000437945 1455 ntTSL 5 BASIC29.83■■■□□ 2.37
CDKL5O76039 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC29.83■■■□□ 2.37
CDKL5O76039 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC29.83■■■□□ 2.37
CDKL5O76039 AC100797.4-201ENST00000631653 1827 ntBASIC29.82■■■□□ 2.36
CDKL5O76039 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC29.82■■■□□ 2.36
CDKL5O76039 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC29.82■■■□□ 2.36
CDKL5O76039 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC29.82■■■□□ 2.36
CDKL5O76039 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
CDKL5O76039 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC29.82■■■□□ 2.36
CDKL5O76039 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC29.81■■■□□ 2.36
CDKL5O76039 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC29.8■■■□□ 2.36
CDKL5O76039 CALM3-209ENST00000597743 577 ntTSL 4 BASIC29.8■■■□□ 2.36
CDKL5O76039 WHAMMP2-203ENST00000563942 1603 ntBASIC29.8■■■□□ 2.36
CDKL5O76039 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
CDKL5O76039 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC29.8■■■□□ 2.36
CDKL5O76039 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC29.8■■■□□ 2.36
CDKL5O76039 PROC-203ENST00000409048 1586 ntTSL 5 BASIC29.79■■■□□ 2.36
CDKL5O76039 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
CDKL5O76039 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC29.78■■■□□ 2.36
CDKL5O76039 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
CDKL5O76039 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
CDKL5O76039 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC29.77■■■□□ 2.36
CDKL5O76039 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
CDKL5O76039 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
CDKL5O76039 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
CDKL5O76039 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC29.76■■■□□ 2.35
CDKL5O76039 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC29.76■■■□□ 2.35
CDKL5O76039 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC29.76■■■□□ 2.35
CDKL5O76039 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC29.75■■■□□ 2.35
CDKL5O76039 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC29.75■■■□□ 2.35
CDKL5O76039 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC29.75■■■□□ 2.35
CDKL5O76039 DUX4L29-201ENST00000425409 679 ntBASIC29.75■■■□□ 2.35
CDKL5O76039 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC29.75■■■□□ 2.35
CDKL5O76039 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC29.74■■■□□ 2.35
CDKL5O76039 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC29.74■■■□□ 2.35
CDKL5O76039 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC29.74■■■□□ 2.35
CDKL5O76039 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
CDKL5O76039 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC29.73■■■□□ 2.35
CDKL5O76039 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
CDKL5O76039 AC021231.2-201ENST00000594613 730 ntBASIC29.73■■■□□ 2.35
CDKL5O76039 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC29.73■■■□□ 2.35
CDKL5O76039 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC29.72■■■□□ 2.35
CDKL5O76039 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC29.72■■■□□ 2.35
CDKL5O76039 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC29.72■■■□□ 2.35
CDKL5O76039 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
CDKL5O76039 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CDKL5O76039 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CDKL5O76039 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC29.71■■■□□ 2.35
CDKL5O76039 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC29.71■■■□□ 2.35
CDKL5O76039 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC29.71■■■□□ 2.35
CDKL5O76039 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
CDKL5O76039 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC29.7■■■□□ 2.35
CDKL5O76039 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
CDKL5O76039 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC29.68■■■□□ 2.34
CDKL5O76039 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
CDKL5O76039 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
CDKL5O76039 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC29.68■■■□□ 2.34
CDKL5O76039 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
CDKL5O76039 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC29.67■■■□□ 2.34
CDKL5O76039 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
CDKL5O76039 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
CDKL5O76039 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC29.67■■■□□ 2.34
CDKL5O76039 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC29.66■■■□□ 2.34
CDKL5O76039 AP002414.2-202ENST00000590929 1450 ntBASIC29.66■■■□□ 2.34
CDKL5O76039 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC29.65■■■□□ 2.34
CDKL5O76039 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.65■■■□□ 2.34
CDKL5O76039 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC29.65■■■□□ 2.34
CDKL5O76039 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
CDKL5O76039 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC29.62■■■□□ 2.33
CDKL5O76039 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC29.62■■■□□ 2.33
CDKL5O76039 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
CDKL5O76039 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
CDKL5O76039 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
CDKL5O76039 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC29.61■■■□□ 2.33
CDKL5O76039 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC29.61■■■□□ 2.33
CDKL5O76039 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC29.61■■■□□ 2.33
CDKL5O76039 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC29.61■■■□□ 2.33
CDKL5O76039 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
CDKL5O76039 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC29.6■■■□□ 2.33
CDKL5O76039 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC29.6■■■□□ 2.33
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms