Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
LSM1O15116 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
LSM1O15116 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LSM1O15116 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
LSM1O15116 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.97■□□□□ 0.63
LSM1O15116 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LSM1O15116 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.97■□□□□ 0.63
LSM1O15116 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.96■□□□□ 0.63
LSM1O15116 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LSM1O15116 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.96■□□□□ 0.63
LSM1O15116 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LSM1O15116 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LSM1O15116 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.96■□□□□ 0.63
LSM1O15116 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LSM1O15116 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.96■□□□□ 0.63
LSM1O15116 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LSM1O15116 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.96■□□□□ 0.63
LSM1O15116 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.96■□□□□ 0.63
LSM1O15116 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LSM1O15116 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LSM1O15116 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.96■□□□□ 0.63
LSM1O15116 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LSM1O15116 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
LSM1O15116 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LSM1O15116 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LSM1O15116 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
LSM1O15116 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
LSM1O15116 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.96■□□□□ 0.63
LSM1O15116 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LSM1O15116 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
LSM1O15116 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.96■□□□□ 0.63
LSM1O15116 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LSM1O15116 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
LSM1O15116 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
LSM1O15116 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.95■□□□□ 0.62
LSM1O15116 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM1O15116 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
LSM1O15116 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.95■□□□□ 0.62
LSM1O15116 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.95■□□□□ 0.62
LSM1O15116 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM1O15116 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM1O15116 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM1O15116 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM1O15116 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM1O15116 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM1O15116 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM1O15116 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LSM1O15116 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM1O15116 AC005181.1-201ENST00000604782 1256 ntBASIC18.95■□□□□ 0.62
LSM1O15116 MIR5787-201ENST00000611784 55 ntBASIC18.95■□□□□ 0.62
LSM1O15116 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
LSM1O15116 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM1O15116 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
LSM1O15116 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
LSM1O15116 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.95■□□□□ 0.62
LSM1O15116 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
LSM1O15116 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
LSM1O15116 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.94■□□□□ 0.62
LSM1O15116 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
LSM1O15116 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LSM1O15116 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LSM1O15116 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
LSM1O15116 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
LSM1O15116 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LSM1O15116 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.94■□□□□ 0.62
LSM1O15116 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
LSM1O15116 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LSM1O15116 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LSM1O15116 AL032819.2-201ENST00000624543 2162 ntBASIC18.94■□□□□ 0.62
LSM1O15116 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.94■□□□□ 0.62
LSM1O15116 AC004911.1-201ENST00000416316 871 ntBASIC18.94■□□□□ 0.62
LSM1O15116 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LSM1O15116 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.94■□□□□ 0.62
LSM1O15116 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
LSM1O15116 AC022517.1-201ENST00000592429 346 ntBASIC18.94■□□□□ 0.62
LSM1O15116 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.94■□□□□ 0.62
LSM1O15116 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
LSM1O15116 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LSM1O15116 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
LSM1O15116 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LSM1O15116 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
LSM1O15116 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
LSM1O15116 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
LSM1O15116 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
LSM1O15116 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
LSM1O15116 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.93■□□□□ 0.62
LSM1O15116 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.93■□□□□ 0.62
LSM1O15116 TNXA-203ENST00000507684 2038 ntBASIC18.93■□□□□ 0.62
LSM1O15116 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.93■□□□□ 0.62
LSM1O15116 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
LSM1O15116 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms