RNA–Protein interactions for RNA: ENST00000578061.5

LIMD2-202, Transcript of LIM domain containing 2, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LIMD2, Length 756 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2-202ENST00000578061 NISCHQ9Y2I1 1504 aa50.72■■■■■ 5.71
LIMD2-202ENST00000578061 CCDC180Q9P1Z9 1646 aa45.15■■■■■ 4.82
LIMD2-202ENST00000578061 ABCC9O60706 1549 aa44.7■■■■■ 4.75
LIMD2-202ENST00000578061 DCAF8L2P0C7V8 631 aa42.72■■■■■ 4.43
LIMD2-202ENST00000578061 RB1CC1Q8TDY2 1594 aa42.72■■■■■ 4.43
LIMD2-202ENST00000578061 NACADO15069 1562 aa42.56■■■■■ 4.4
LIMD2-202ENST00000578061 ZCCHC6Q5VYS8 1495 aaKnown RBP42.17■■■■■ 4.34
LIMD2-202ENST00000578061 MYO15BQ96JP2 1530 aa42.13■■■■■ 4.33
LIMD2-202ENST00000578061 DCAF1Q9Y4B6 1507 aa41.85■■■■■ 4.29
LIMD2-202ENST00000578061 PABPN1Q86U42 306 aaKnown RBP eCLIP41.78■■■■■ 4.28
LIMD2-202ENST00000578061 UNC13AQ9UPW8 1703 aa41.75■■■■■ 4.27
LIMD2-202ENST00000578061 BICRAQ9NZM4 1560 aa41.47■■■■■ 4.23
LIMD2-202ENST00000578061 DNAJC5BQ9UF47 199 aa41.37■■■■■ 4.21
LIMD2-202ENST00000578061 SCRIBQ14160 1630 aa41.33■■■■■ 4.21
LIMD2-202ENST00000578061 SHROOM4Q9ULL8 1493 aa40.87■■■■■ 4.13
LIMD2-202ENST00000578061 EIF4G1Q04637 1599 aaKnown RBP40.41■■■■■ 4.06
LIMD2-202ENST00000578061 CC2D2AQ9P2K1 1620 aa40.34■■■■■ 4.05
LIMD2-202ENST00000578061 CECR2Q9BXF3 1484 aa40.15■■■■■ 4.02
LIMD2-202ENST00000578061 SMARCA4P51532 1647 aa39.43■■■■□ 3.9
LIMD2-202ENST00000578061 ATAD2BQ9ULI0 1458 aa39.32■■■■□ 3.89
LIMD2-202ENST00000578061 NCAPD3P42695 1498 aa39.31■■■■□ 3.88
LIMD2-202ENST00000578061 BAZ1AQ9NRL2 1556 aaPredicted RBP39.31■■■■□ 3.88
LIMD2-202ENST00000578061 SMARCA2P51531 1590 aa39.2■■■■□ 3.87
LIMD2-202ENST00000578061 MROH2BQ7Z745 1585 aa39.14■■■■□ 3.86
LIMD2-202ENST00000578061 HMGXB3Q12766 1538 aa39.05■■■■□ 3.84
LIMD2-202ENST00000578061 BAZ1BQ9UIG0 1483 aaKnown RBP38.98■■■■□ 3.83
LIMD2-202ENST00000578061 PEG3Q9GZU2 1588 aa38.98■■■■□ 3.83
LIMD2-202ENST00000578061 WIZO95785 1651 aa38.7■■■■□ 3.79
LIMD2-202ENST00000578061 NESP48681 1621 aa38.58■■■■□ 3.77
LIMD2-202ENST00000578061 RSF1Q96T23 1441 aaPredicted RBP38.56■■■■□ 3.76
LIMD2-202ENST00000578061 ERCC6Q03468 1493 aa38.52■■■■□ 3.76
LIMD2-202ENST00000578061 LAMC3Q9Y6N6 1575 aa38.3■■■■□ 3.72
LIMD2-202ENST00000578061 TOP2AP11388 1531 aaKnown RBP38.22■■■■□ 3.71
LIMD2-202ENST00000578061 CADPSQ9ULU8 1353 aa38.19■■■■□ 3.7
LIMD2-202ENST00000578061 CUX2O14529 1486 aa38.14■■■■□ 3.7
LIMD2-202ENST00000578061 PDS5BQ9NTI5 1447 aa38.1■■■■□ 3.69
LIMD2-202ENST00000578061 KIF21AQ7Z4S6 1674 aa38.04■■■■□ 3.68
LIMD2-202ENST00000578061 THOC2Q8NI27 1593 aaKnown RBP37.97■■■■□ 3.67
LIMD2-202ENST00000578061 CFTRP13569 1480 aa37.86■■■■□ 3.65
LIMD2-202ENST00000578061 CCDC88BA6NC98 1476 aa37.83■■■■□ 3.65
LIMD2-202ENST00000578061 FANCD2Q9BXW9 1451 aa37.77■■■■□ 3.64
LIMD2-202ENST00000578061 MRC2Q9UBG0 1479 aa37.74■■■■□ 3.63
LIMD2-202ENST00000578061 CEP164Q9UPV0 1460 aa37.73■■■■□ 3.63
LIMD2-202ENST00000578061 WDR62O43379 1518 aa37.6■■■■□ 3.61
LIMD2-202ENST00000578061 SUPT5HO00267 1087 aaKnown RBP37.47■■■■□ 3.59
LIMD2-202ENST00000578061 PRDM2Q13029 1718 aa37.46■■■■□ 3.59
LIMD2-202ENST00000578061 DNAJC5Q9H3Z4 198 aa37.44■■■■□ 3.58
LIMD2-202ENST00000578061 URB2Q14146 1524 aaKnown RBP37.42■■■■□ 3.58
LIMD2-202ENST00000578061 TOPBP1Q92547 1522 aa37.11■■■■□ 3.53
LIMD2-202ENST00000578061 DNMBPQ6XZF7 1577 aa37.01■■■■□ 3.52
LIMD2-202ENST00000578061 ABCC8Q09428 1581 aa37■■■■□ 3.51
LIMD2-202ENST00000578061 IFT140Q96RY7 1462 aa36.94■■■■□ 3.5
LIMD2-202ENST00000578061 ZNF608Q9ULD9 1512 aaPredicted RBP36.88■■■■□ 3.49
LIMD2-202ENST00000578061 POLA1P09884 1462 aaPredicted RBP36.78■■■■□ 3.48
LIMD2-202ENST00000578061 CUX1P39880 1505 aa36.73■■■■□ 3.47
LIMD2-202ENST00000578061 TARBP1Q13395 1621 aaKnown RBP36.7■■■■□ 3.47
LIMD2-202ENST00000578061 RAD54L2Q9Y4B4 1467 aa36.69■■■■□ 3.46
LIMD2-202ENST00000578061 FGD5Q6ZNL6 1462 aa36.66■■■■□ 3.46
LIMD2-202ENST00000578061 EIF4G3O43432 1585 aaKnown RBP36.66■■■■□ 3.46
LIMD2-202ENST00000578061 AQRO60306 1485 aaKnown RBP eCLIP36.64■■■■□ 3.46
LIMD2-202ENST00000578061 SOGA1O94964 1423 aa36.64■■■■□ 3.46
LIMD2-202ENST00000578061 OSCARQ8IYS5 282 aa36.58■■■■□ 3.45
LIMD2-202ENST00000578061 TDRD9Q8NDG6 1382 aaKnown RBP36.53■■■■□ 3.44
LIMD2-202ENST00000578061 WRNQ14191 1432 aaPredicted RBP eCLIP36.36■■■■□ 3.41
LIMD2-202ENST00000578061 FBLN2P98095 1184 aa36.32■■■■□ 3.4
LIMD2-202ENST00000578061 SYNJ1O43426 1573 aa36.31■■■■□ 3.4
LIMD2-202ENST00000578061 WDR97A6NE52 1622 aa36.29■■■■□ 3.4
LIMD2-202ENST00000578061 TOP2BQ02880 1626 aa36.27■■■■□ 3.4
LIMD2-202ENST00000578061 SNAPC4Q5SXM2 1469 aa36.26■■■■□ 3.4
LIMD2-202ENST00000578061 CHD1O14646 1710 aa36.25■■■■□ 3.39
LIMD2-202ENST00000578061 BIVM-ERCC5R4GMW8 1640 aa36.25■■■■□ 3.39
LIMD2-202ENST00000578061 ABCA10Q8WWZ4 1543 aa36.24■■■■□ 3.39
LIMD2-202ENST00000578061 GRIN2BQ13224 1484 aa36.22■■■■□ 3.39
LIMD2-202ENST00000578061 GAPVD1Q14C86 1478 aa36.19■■■■□ 3.38
LIMD2-202ENST00000578061 TRIM41Q8WV44 630 aa36.19■■■■□ 3.38
LIMD2-202ENST00000578061 MAGI1Q96QZ7 1491 aaPredicted RBP36.12■■■■□ 3.37
LIMD2-202ENST00000578061 ABCA5Q8WWZ7 1642 aa36.12■■■■□ 3.37
LIMD2-202ENST00000578061 CHMP7Q8WUX9 453 aaPredicted RBP36.11■■■■□ 3.37
LIMD2-202ENST00000578061 PBRM1Q86U86 1689 aa36.1■■■■□ 3.37
LIMD2-202ENST00000578061 SYNJ2O15056 1496 aa36.02■■■■□ 3.36
LIMD2-202ENST00000578061 RIMBP3CA6NJZ7 1639 aa36.01■■■■□ 3.36
LIMD2-202ENST00000578061 RIMBP3BA6NNM3 1639 aa36.01■■■■□ 3.36
LIMD2-202ENST00000578061 RIMBP3Q9UFD9 1639 aa36.01■■■■□ 3.36
LIMD2-202ENST00000578061 ARHGEF11O15085 1522 aa35.97■■■■□ 3.35
LIMD2-202ENST00000578061 CLASP1Q7Z460 1538 aa35.84■■■■□ 3.33
LIMD2-202ENST00000578061 ADAMTS12P58397 1594 aa35.81■■■■□ 3.32
LIMD2-202ENST00000578061 ERICH3Q5RHP9 1530 aa35.78■■■■□ 3.32
LIMD2-202ENST00000578061 GRIN2AQ12879 1464 aa35.76■■■■□ 3.32
LIMD2-202ENST00000578061 FHAD1B1AJZ9 1412 aa35.75■■■■□ 3.31
LIMD2-202ENST00000578061 CYB5RLQ6IPT4 315 aa35.74■■■■□ 3.31
LIMD2-202ENST00000578061 ARAP1Q96P48 1450 aa35.67■■■■□ 3.3
LIMD2-202ENST00000578061 CEP170Q5SW79 1584 aa35.61■■■■□ 3.29
LIMD2-202ENST00000578061 KIF27Q86VH2 1401 aa35.61■■■■□ 3.29
LIMD2-202ENST00000578061 NUP160Q12769 1436 aa35.6■■■■□ 3.29
LIMD2-202ENST00000578061 IGF1RP08069 1367 aa35.54■■■■□ 3.28
LIMD2-202ENST00000578061 ERCC6L2Q5T890 1561 aa35.41■■■■□ 3.26
LIMD2-202ENST00000578061 CUL7Q14999 1698 aa35.37■■■■□ 3.25
LIMD2-202ENST00000578061 SHROOM2Q13796 1616 aa35.33■■■■□ 3.25
LIMD2-202ENST00000578061 CARMIL1Q5VZK9 1371 aa35.32■■■■□ 3.24
LIMD2-202ENST00000578061 RUSC2Q8N2Y8 1516 aa35.29■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms