RNA–Protein interactions for RNA: ENST00000559494.1

TSPAN3-207, Transcript of tetraspanin 3, humanhuman

TSL 5 BASIC

Gene TSPAN3, Length 1,326 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-207ENST00000559494 NISCHQ9Y2I1 1504 aa48.83■■■■■ 5.41
TSPAN3-207ENST00000559494 CCDC180Q9P1Z9 1646 aa43.21■■■■■ 4.51
TSPAN3-207ENST00000559494 ABCC9O60706 1549 aa42.18■■■■■ 4.34
TSPAN3-207ENST00000559494 DCAF8L2P0C7V8 631 aa40.82■■■■■ 4.13
TSPAN3-207ENST00000559494 ZCCHC6Q5VYS8 1495 aaKnown RBP40.7■■■■■ 4.11
TSPAN3-207ENST00000559494 NACADO15069 1562 aa40.62■■■■■ 4.09
TSPAN3-207ENST00000559494 RB1CC1Q8TDY2 1594 aa40.6■■■■■ 4.09
TSPAN3-207ENST00000559494 MYO15BQ96JP2 1530 aa40.45■■■■■ 4.07
TSPAN3-207ENST00000559494 DCAF1Q9Y4B6 1507 aa40.38■■■■■ 4.05
TSPAN3-207ENST00000559494 UNC13AQ9UPW8 1703 aa39.71■■■■□ 3.95
TSPAN3-207ENST00000559494 PABPN1Q86U42 306 aaKnown RBP eCLIP39.54■■■■□ 3.92
TSPAN3-207ENST00000559494 SCRIBQ14160 1630 aa39.51■■■■□ 3.92
TSPAN3-207ENST00000559494 BICRAQ9NZM4 1560 aa39.42■■■■□ 3.9
TSPAN3-207ENST00000559494 SHROOM4Q9ULL8 1493 aa38.92■■■■□ 3.82
TSPAN3-207ENST00000559494 DNAJC5BQ9UF47 199 aa38.64■■■■□ 3.78
TSPAN3-207ENST00000559494 EIF4G1Q04637 1599 aaKnown RBP38.33■■■■□ 3.73
TSPAN3-207ENST00000559494 CC2D2AQ9P2K1 1620 aa38.14■■■■□ 3.7
TSPAN3-207ENST00000559494 CECR2Q9BXF3 1484 aa38.08■■■■□ 3.69
TSPAN3-207ENST00000559494 SMARCA4P51532 1647 aa37.81■■■■□ 3.64
TSPAN3-207ENST00000559494 BAZ1AQ9NRL2 1556 aaPredicted RBP37.79■■■■□ 3.64
TSPAN3-207ENST00000559494 MROH2BQ7Z745 1585 aa37.66■■■■□ 3.62
TSPAN3-207ENST00000559494 ATAD2BQ9ULI0 1458 aa37.6■■■■□ 3.61
TSPAN3-207ENST00000559494 NCAPD3P42695 1498 aa37.54■■■■□ 3.6
TSPAN3-207ENST00000559494 SMARCA2P51531 1590 aa37.5■■■■□ 3.59
TSPAN3-207ENST00000559494 PEG3Q9GZU2 1588 aa37.43■■■■□ 3.58
TSPAN3-207ENST00000559494 RSF1Q96T23 1441 aaPredicted RBP37.34■■■■□ 3.57
TSPAN3-207ENST00000559494 HMGXB3Q12766 1538 aa37.3■■■■□ 3.56
TSPAN3-207ENST00000559494 BAZ1BQ9UIG0 1483 aaKnown RBP37.26■■■■□ 3.55
TSPAN3-207ENST00000559494 WIZO95785 1651 aa37.25■■■■□ 3.55
TSPAN3-207ENST00000559494 TOP2AP11388 1531 aaKnown RBP36.82■■■■□ 3.49
TSPAN3-207ENST00000559494 SUPT5HO00267 1087 aaKnown RBP36.63■■■■□ 3.45
TSPAN3-207ENST00000559494 NESP48681 1621 aa36.59■■■■□ 3.45
TSPAN3-207ENST00000559494 CADPSQ9ULU8 1353 aa36.48■■■■□ 3.43
TSPAN3-207ENST00000559494 CCDC88BA6NC98 1476 aa36.47■■■■□ 3.43
TSPAN3-207ENST00000559494 LAMC3Q9Y6N6 1575 aa36.45■■■■□ 3.43
TSPAN3-207ENST00000559494 CFTRP13569 1480 aa36.28■■■■□ 3.4
TSPAN3-207ENST00000559494 ERCC6Q03468 1493 aa36.28■■■■□ 3.4
TSPAN3-207ENST00000559494 PDS5BQ9NTI5 1447 aa36.24■■■■□ 3.39
TSPAN3-207ENST00000559494 KIF21AQ7Z4S6 1674 aa36.08■■■■□ 3.37
TSPAN3-207ENST00000559494 FANCD2Q9BXW9 1451 aa36.02■■■■□ 3.36
TSPAN3-207ENST00000559494 CEP164Q9UPV0 1460 aa35.92■■■■□ 3.34
TSPAN3-207ENST00000559494 PRDM2Q13029 1718 aa35.92■■■■□ 3.34
TSPAN3-207ENST00000559494 THOC2Q8NI27 1593 aaKnown RBP35.9■■■■□ 3.34
TSPAN3-207ENST00000559494 MRC2Q9UBG0 1479 aa35.83■■■■□ 3.33
TSPAN3-207ENST00000559494 CUX2O14529 1486 aa35.81■■■■□ 3.32
TSPAN3-207ENST00000559494 WDR62O43379 1518 aa35.69■■■■□ 3.3
TSPAN3-207ENST00000559494 URB2Q14146 1524 aaKnown RBP35.66■■■■□ 3.3
TSPAN3-207ENST00000559494 TOPBP1Q92547 1522 aa35.48■■■■□ 3.27
TSPAN3-207ENST00000559494 ABCC8Q09428 1581 aa35.46■■■■□ 3.27
TSPAN3-207ENST00000559494 DNMBPQ6XZF7 1577 aa35.41■■■■□ 3.26
TSPAN3-207ENST00000559494 CUX1P39880 1505 aa35.31■■■■□ 3.24
TSPAN3-207ENST00000559494 POLA1P09884 1462 aaPredicted RBP35.18■■■■□ 3.22
TSPAN3-207ENST00000559494 IFT140Q96RY7 1462 aa35.18■■■■□ 3.22
TSPAN3-207ENST00000559494 WRNQ14191 1432 aaPredicted RBP eCLIP35.16■■■■□ 3.22
TSPAN3-207ENST00000559494 FGD5Q6ZNL6 1462 aa35.13■■■■□ 3.22
TSPAN3-207ENST00000559494 SOGA1O94964 1423 aa35.09■■■■□ 3.21
TSPAN3-207ENST00000559494 RAD54L2Q9Y4B4 1467 aa35.08■■■■□ 3.21
TSPAN3-207ENST00000559494 TARBP1Q13395 1621 aaKnown RBP35.06■■■■□ 3.2
TSPAN3-207ENST00000559494 SYNJ1O43426 1573 aa35.05■■■■□ 3.2
TSPAN3-207ENST00000559494 ZNF608Q9ULD9 1512 aaPredicted RBP35.04■■■■□ 3.2
TSPAN3-207ENST00000559494 TOP2BQ02880 1626 aa35.02■■■■□ 3.2
TSPAN3-207ENST00000559494 BIVM-ERCC5R4GMW8 1640 aa35■■■■□ 3.19
TSPAN3-207ENST00000559494 AQRO60306 1485 aaKnown RBP eCLIP34.9■■■■□ 3.18
TSPAN3-207ENST00000559494 TDRD9Q8NDG6 1382 aaKnown RBP34.89■■■■□ 3.18
TSPAN3-207ENST00000559494 EIF4G3O43432 1585 aaKnown RBP34.83■■■■□ 3.17
TSPAN3-207ENST00000559494 ABCA10Q8WWZ4 1543 aa34.8■■■■□ 3.16
TSPAN3-207ENST00000559494 WDR97A6NE52 1622 aa34.77■■■■□ 3.16
TSPAN3-207ENST00000559494 DNAJC5Q9H3Z4 198 aa34.67■■■■□ 3.14
TSPAN3-207ENST00000559494 GAPVD1Q14C86 1478 aa34.66■■■■□ 3.14
TSPAN3-207ENST00000559494 GRIN2BQ13224 1484 aa34.6■■■■□ 3.13
TSPAN3-207ENST00000559494 ABCA5Q8WWZ7 1642 aa34.6■■■■□ 3.13
TSPAN3-207ENST00000559494 TRIM41Q8WV44 630 aa34.55■■■■□ 3.12
TSPAN3-207ENST00000559494 SNAPC4Q5SXM2 1469 aa34.53■■■■□ 3.12
TSPAN3-207ENST00000559494 PBRM1Q86U86 1689 aa34.49■■■■□ 3.11
TSPAN3-207ENST00000559494 OSCARQ8IYS5 282 aa34.47■■■■□ 3.11
TSPAN3-207ENST00000559494 MAGI1Q96QZ7 1491 aaPredicted RBP34.46■■■■□ 3.11
TSPAN3-207ENST00000559494 FBLN2P98095 1184 aa34.45■■■■□ 3.11
TSPAN3-207ENST00000559494 KIF27Q86VH2 1401 aa34.4■■■■□ 3.1
TSPAN3-207ENST00000559494 CHMP7Q8WUX9 453 aaPredicted RBP34.38■■■■□ 3.09
TSPAN3-207ENST00000559494 ERICH3Q5RHP9 1530 aa34.37■■■■□ 3.09
TSPAN3-207ENST00000559494 CHD1O14646 1710 aa34.36■■■■□ 3.09
TSPAN3-207ENST00000559494 SYNJ2O15056 1496 aa34.34■■■■□ 3.09
TSPAN3-207ENST00000559494 CHIC1Q5VXU3 224 aa34.34■■■■□ 3.09
TSPAN3-207ENST00000559494 IGF1RP08069 1367 aa34.32■■■■□ 3.08
TSPAN3-207ENST00000559494 FHAD1B1AJZ9 1412 aa34.26■■■■□ 3.07
TSPAN3-207ENST00000559494 ADAMTS12P58397 1594 aa34.25■■■■□ 3.07
TSPAN3-207ENST00000559494 RUSC2Q8N2Y8 1516 aa34.25■■■■□ 3.07
TSPAN3-207ENST00000559494 GRIN2AQ12879 1464 aa34.15■■■■□ 3.06
TSPAN3-207ENST00000559494 CARMIL1Q5VZK9 1371 aa34.09■■■■□ 3.05
TSPAN3-207ENST00000559494 CUL7Q14999 1698 aa34.06■■■■□ 3.04
TSPAN3-207ENST00000559494 CLASP1Q7Z460 1538 aa34.01■■■■□ 3.04
TSPAN3-207ENST00000559494 NUP160Q12769 1436 aa34.01■■■■□ 3.03
TSPAN3-207ENST00000559494 CEP170Q5SW79 1584 aa33.98■■■■□ 3.03
TSPAN3-207ENST00000559494 CSRNP3Q8WYN3 585 aa33.91■■■■□ 3.02
TSPAN3-207ENST00000559494 FAM9AQ8IZU1 332 aaPredicted RBP33.87■■■■□ 3.01
TSPAN3-207ENST00000559494 EEA1Q15075 1411 aa33.87■■■■□ 3.01
TSPAN3-207ENST00000559494 RAPGEF2Q9Y4G8 1499 aa33.87■■■■□ 3.01
TSPAN3-207ENST00000559494 ARHGEF11O15085 1522 aa33.84■■■■□ 3.01
TSPAN3-207ENST00000559494 PRXQ9BXM0 1461 aa33.82■■■■□ 3
TSPAN3-207ENST00000559494 RIMBP3CA6NJZ7 1639 aa33.81■■■■□ 3
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms