Protein–RNA interactions for Protein: Q9Y5G4

PCDHGA9, Protocadherin gamma-A9, humanhuman

Known RBP Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA9Q9Y5G4 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHGA9Q9Y5G4 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
PCDHGA9Q9Y5G4 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
PCDHGA9Q9Y5G4 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
PCDHGA9Q9Y5G4 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
PCDHGA9Q9Y5G4 CHML-204ENST00000638121 920 ntTSL 2 BASIC24.31■■□□□ 1.48
PCDHGA9Q9Y5G4 AC120057.4-201ENST00000624722 1615 ntBASIC24.31■■□□□ 1.48
PCDHGA9Q9Y5G4 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC24.31■■□□□ 1.48
PCDHGA9Q9Y5G4 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHGA9Q9Y5G4 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
PCDHGA9Q9Y5G4 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC24.29■■□□□ 1.48
PCDHGA9Q9Y5G4 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PCDHGA9Q9Y5G4 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC24.29■■□□□ 1.48
PCDHGA9Q9Y5G4 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
PCDHGA9Q9Y5G4 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PCDHGA9Q9Y5G4 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
PCDHGA9Q9Y5G4 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
PCDHGA9Q9Y5G4 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC24.28■■□□□ 1.48
PCDHGA9Q9Y5G4 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
PCDHGA9Q9Y5G4 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
PCDHGA9Q9Y5G4 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC24.25■■□□□ 1.47
PCDHGA9Q9Y5G4 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHGA9Q9Y5G4 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC24.24■■□□□ 1.47
PCDHGA9Q9Y5G4 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC24.23■■□□□ 1.47
PCDHGA9Q9Y5G4 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
PCDHGA9Q9Y5G4 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHGA9Q9Y5G4 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
PCDHGA9Q9Y5G4 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHGA9Q9Y5G4 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC24.21■■□□□ 1.47
PCDHGA9Q9Y5G4 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.47
PCDHGA9Q9Y5G4 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHGA9Q9Y5G4 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHGA9Q9Y5G4 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC24.2■■□□□ 1.46
PCDHGA9Q9Y5G4 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHGA9Q9Y5G4 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC24.2■■□□□ 1.46
PCDHGA9Q9Y5G4 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHGA9Q9Y5G4 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHGA9Q9Y5G4 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHGA9Q9Y5G4 SRP68-213ENST00000629930 165 ntTSL 5 BASIC24.2■■□□□ 1.46
PCDHGA9Q9Y5G4 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHGA9Q9Y5G4 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHGA9Q9Y5G4 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHGA9Q9Y5G4 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHGA9Q9Y5G4 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
PCDHGA9Q9Y5G4 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC24.18■■□□□ 1.46
PCDHGA9Q9Y5G4 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHGA9Q9Y5G4 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHGA9Q9Y5G4 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC24.18■■□□□ 1.46
PCDHGA9Q9Y5G4 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC24.18■■□□□ 1.46
PCDHGA9Q9Y5G4 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHGA9Q9Y5G4 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC24.18■■□□□ 1.46
PCDHGA9Q9Y5G4 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC24.18■■□□□ 1.46
PCDHGA9Q9Y5G4 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC24.18■■□□□ 1.46
PCDHGA9Q9Y5G4 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHGA9Q9Y5G4 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC24.17■■□□□ 1.46
PCDHGA9Q9Y5G4 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHGA9Q9Y5G4 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHGA9Q9Y5G4 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHGA9Q9Y5G4 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC24.16■■□□□ 1.46
PCDHGA9Q9Y5G4 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHGA9Q9Y5G4 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHGA9Q9Y5G4 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
PCDHGA9Q9Y5G4 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHGA9Q9Y5G4 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHGA9Q9Y5G4 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
PCDHGA9Q9Y5G4 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC24.15■■□□□ 1.46
PCDHGA9Q9Y5G4 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
PCDHGA9Q9Y5G4 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC24.14■■□□□ 1.45
PCDHGA9Q9Y5G4 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC24.14■■□□□ 1.45
PCDHGA9Q9Y5G4 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
PCDHGA9Q9Y5G4 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
PCDHGA9Q9Y5G4 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
PCDHGA9Q9Y5G4 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC24.13■■□□□ 1.45
PCDHGA9Q9Y5G4 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
PCDHGA9Q9Y5G4 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHGA9Q9Y5G4 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
PCDHGA9Q9Y5G4 LINC00273-201ENST00000539813 1452 ntBASIC24.12■■□□□ 1.45
PCDHGA9Q9Y5G4 RARRES2P2-201ENST00000394842 485 ntBASIC24.11■■□□□ 1.45
PCDHGA9Q9Y5G4 CHST11-202ENST00000546689 756 ntTSL 2 BASIC24.11■■□□□ 1.45
PCDHGA9Q9Y5G4 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
PCDHGA9Q9Y5G4 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC24.1■■□□□ 1.45
PCDHGA9Q9Y5G4 ABCB10P1-201ENST00000614297 2181 ntBASIC24.1■■□□□ 1.45
PCDHGA9Q9Y5G4 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHGA9Q9Y5G4 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC24.1■■□□□ 1.45
PCDHGA9Q9Y5G4 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
PCDHGA9Q9Y5G4 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHGA9Q9Y5G4 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC24.09■■□□□ 1.45
PCDHGA9Q9Y5G4 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHGA9Q9Y5G4 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
PCDHGA9Q9Y5G4 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC24.08■■□□□ 1.45
PCDHGA9Q9Y5G4 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC24.08■■□□□ 1.45
PCDHGA9Q9Y5G4 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC24.07■■□□□ 1.44
PCDHGA9Q9Y5G4 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHGA9Q9Y5G4 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC24.06■■□□□ 1.44
PCDHGA9Q9Y5G4 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC24.06■■□□□ 1.44
PCDHGA9Q9Y5G4 ABHD17AP5-201ENST00000580133 923 ntBASIC24.06■■□□□ 1.44
PCDHGA9Q9Y5G4 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC24.06■■□□□ 1.44
PCDHGA9Q9Y5G4 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
PCDHGA9Q9Y5G4 TPT1-202ENST00000379055 948 ntTSL 2 BASIC24.05■■□□□ 1.44
PCDHGA9Q9Y5G4 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC24.05■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms