Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL2A1P02458 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
COL2A1P02458 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC31.01■■■□□ 2.55
COL2A1P02458 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC31■■■□□ 2.55
COL2A1P02458 HSD17B1P1-201ENST00000590052 955 ntBASIC30.99■■■□□ 2.55
COL2A1P02458 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC30.99■■■□□ 2.55
COL2A1P02458 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
COL2A1P02458 METRNL-202ENST00000570778 967 ntTSL 5 BASIC30.98■■■□□ 2.55
COL2A1P02458 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC30.97■■■□□ 2.55
COL2A1P02458 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
COL2A1P02458 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
COL2A1P02458 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
COL2A1P02458 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC30.94■■■□□ 2.54
COL2A1P02458 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC30.93■■■□□ 2.54
COL2A1P02458 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
COL2A1P02458 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
COL2A1P02458 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
COL2A1P02458 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC30.91■■■□□ 2.54
COL2A1P02458 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC30.91■■■□□ 2.54
COL2A1P02458 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
COL2A1P02458 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
COL2A1P02458 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC30.9■■■□□ 2.54
COL2A1P02458 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
COL2A1P02458 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC30.88■■■□□ 2.53
COL2A1P02458 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC30.88■■■□□ 2.53
COL2A1P02458 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC30.88■■■□□ 2.53
COL2A1P02458 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC30.88■■■□□ 2.53
COL2A1P02458 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC30.87■■■□□ 2.53
COL2A1P02458 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC30.87■■■□□ 2.53
COL2A1P02458 AC127502.1-201ENST00000399971 1502 ntBASIC30.85■■■□□ 2.53
COL2A1P02458 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC30.85■■■□□ 2.53
COL2A1P02458 AL135925.1-201ENST00000605920 1701 ntBASIC30.85■■■□□ 2.53
COL2A1P02458 SRP68-213ENST00000629930 165 ntTSL 5 BASIC30.84■■■□□ 2.53
COL2A1P02458 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC30.83■■■□□ 2.53
COL2A1P02458 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
COL2A1P02458 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
COL2A1P02458 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
COL2A1P02458 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
COL2A1P02458 ABHD17AP3-201ENST00000503096 1137 ntBASIC30.82■■■□□ 2.52
COL2A1P02458 CHST11-202ENST00000546689 756 ntTSL 2 BASIC30.82■■■□□ 2.52
COL2A1P02458 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC30.81■■■□□ 2.52
COL2A1P02458 AC135983.2-203ENST00000454486 1613 ntBASIC30.81■■■□□ 2.52
COL2A1P02458 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC30.81■■■□□ 2.52
COL2A1P02458 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
COL2A1P02458 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC30.8■■■□□ 2.52
COL2A1P02458 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC30.8■■■□□ 2.52
COL2A1P02458 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC30.79■■■□□ 2.52
COL2A1P02458 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC30.79■■■□□ 2.52
COL2A1P02458 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
COL2A1P02458 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
COL2A1P02458 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
COL2A1P02458 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
COL2A1P02458 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
COL2A1P02458 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC30.79■■■□□ 2.52
COL2A1P02458 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC30.79■■■□□ 2.52
COL2A1P02458 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC30.79■■■□□ 2.52
COL2A1P02458 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
COL2A1P02458 BRD4-212ENST00000630599 726 ntTSL 2 BASIC30.78■■■□□ 2.52
COL2A1P02458 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL2A1P02458 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
COL2A1P02458 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC30.77■■■□□ 2.52
COL2A1P02458 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
COL2A1P02458 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
COL2A1P02458 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC30.76■■■□□ 2.51
COL2A1P02458 WHAMMP2-203ENST00000563942 1603 ntBASIC30.75■■■□□ 2.51
COL2A1P02458 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
COL2A1P02458 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
COL2A1P02458 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC30.75■■■□□ 2.51
COL2A1P02458 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC30.74■■■□□ 2.51
COL2A1P02458 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC30.74■■■□□ 2.51
COL2A1P02458 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC30.74■■■□□ 2.51
COL2A1P02458 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC30.73■■■□□ 2.51
COL2A1P02458 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC30.73■■■□□ 2.51
COL2A1P02458 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC30.72■■■□□ 2.51
COL2A1P02458 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
COL2A1P02458 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
COL2A1P02458 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC30.7■■■□□ 2.51
COL2A1P02458 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC30.69■■■□□ 2.5
COL2A1P02458 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
COL2A1P02458 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
COL2A1P02458 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
COL2A1P02458 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC30.68■■■□□ 2.5
COL2A1P02458 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC30.68■■■□□ 2.5
COL2A1P02458 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC30.68■■■□□ 2.5
COL2A1P02458 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC30.66■■■□□ 2.5
COL2A1P02458 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC30.64■■■□□ 2.5
COL2A1P02458 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
COL2A1P02458 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
COL2A1P02458 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC30.64■■■□□ 2.49
COL2A1P02458 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
COL2A1P02458 AC008813.1-201ENST00000536597 885 ntBASIC30.63■■■□□ 2.49
COL2A1P02458 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
COL2A1P02458 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC30.63■■■□□ 2.49
COL2A1P02458 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC30.62■■■□□ 2.49
COL2A1P02458 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC30.62■■■□□ 2.49
COL2A1P02458 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
COL2A1P02458 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
COL2A1P02458 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
COL2A1P02458 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC30.59■■■□□ 2.49
COL2A1P02458 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms