Protein–RNA interactions for Protein: A2RU48

SMCO3, Single-pass membrane and coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO3A2RU48 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO3A2RU48 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO3A2RU48 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SMCO3A2RU48 AL162377.1-201ENST00000618844 1793 ntBASIC16.3■□□□□ 0.2
SMCO3A2RU48 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC16.3■□□□□ 0.2
SMCO3A2RU48 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
SMCO3A2RU48 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO3A2RU48 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO3A2RU48 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC16.3■□□□□ 0.2
SMCO3A2RU48 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO3A2RU48 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO3A2RU48 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMCO3A2RU48 BX005040.4-201ENST00000637145 1518 ntBASIC16.29■□□□□ 0.2
SMCO3A2RU48 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO3A2RU48 AC011484.1-201ENST00000377652 1995 ntBASIC16.29■□□□□ 0.2
SMCO3A2RU48 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO3A2RU48 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO3A2RU48 AC055733.4-201ENST00000638462 1354 ntBASIC16.29■□□□□ 0.2
SMCO3A2RU48 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.29■□□□□ 0.2
SMCO3A2RU48 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC16.29■□□□□ 0.2
SMCO3A2RU48 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO3A2RU48 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SMCO3A2RU48 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC16.29■□□□□ 0.2
SMCO3A2RU48 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO3A2RU48 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO3A2RU48 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO3A2RU48 BX842568.3-201ENST00000418104 571 ntBASIC16.29■□□□□ 0.2
SMCO3A2RU48 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.29■□□□□ 0.2
SMCO3A2RU48 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SMCO3A2RU48 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO3A2RU48 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC16.29■□□□□ 0.2
SMCO3A2RU48 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SMCO3A2RU48 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SMCO3A2RU48 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC16.29■□□□□ 0.2
SMCO3A2RU48 AC092720.2-201ENST00000602388 1665 ntBASIC16.29■□□□□ 0.2
SMCO3A2RU48 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO3A2RU48 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SMCO3A2RU48 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO3A2RU48 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC16.29■□□□□ 0.2
SMCO3A2RU48 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO3A2RU48 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO3A2RU48 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO3A2RU48 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO3A2RU48 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
SMCO3A2RU48 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
SMCO3A2RU48 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMCO3A2RU48 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMCO3A2RU48 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMCO3A2RU48 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMCO3A2RU48 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SMCO3A2RU48 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
SMCO3A2RU48 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC16.28■□□□□ 0.2
SMCO3A2RU48 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMCO3A2RU48 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMCO3A2RU48 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC16.28■□□□□ 0.2
SMCO3A2RU48 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC16.28■□□□□ 0.2
SMCO3A2RU48 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SMCO3A2RU48 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
SMCO3A2RU48 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC16.28■□□□□ 0.2
SMCO3A2RU48 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SMCO3A2RU48 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
SMCO3A2RU48 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC16.28■□□□□ 0.2
SMCO3A2RU48 AL158211.5-201ENST00000623583 2518 ntBASIC16.28■□□□□ 0.2
SMCO3A2RU48 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMCO3A2RU48 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC16.28■□□□□ 0.2
SMCO3A2RU48 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMCO3A2RU48 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC16.28■□□□□ 0.2
SMCO3A2RU48 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC16.28■□□□□ 0.2
SMCO3A2RU48 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SMCO3A2RU48 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC16.27■□□□□ 0.2
SMCO3A2RU48 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SMCO3A2RU48 STAC-204ENST00000457375 1366 ntTSL 2 BASIC16.27■□□□□ 0.2
SMCO3A2RU48 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SMCO3A2RU48 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SMCO3A2RU48 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
SMCO3A2RU48 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SMCO3A2RU48 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.27■□□□□ 0.2
SMCO3A2RU48 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
SMCO3A2RU48 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.27■□□□□ 0.2
SMCO3A2RU48 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SMCO3A2RU48 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SMCO3A2RU48 AL356441.2-201ENST00000443009 864 ntBASIC16.27■□□□□ 0.2
SMCO3A2RU48 RNF146-206ENST00000480444 843 ntTSL 2 BASIC16.27■□□□□ 0.2
SMCO3A2RU48 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC16.27■□□□□ 0.2
SMCO3A2RU48 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC16.27■□□□□ 0.2
SMCO3A2RU48 MIR4767-201ENST00000582827 78 ntBASIC16.27■□□□□ 0.2
SMCO3A2RU48 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SMCO3A2RU48 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC16.27■□□□□ 0.2
SMCO3A2RU48 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SMCO3A2RU48 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
SMCO3A2RU48 AC005224.4-201ENST00000583262 1652 ntBASIC16.27■□□□□ 0.19
SMCO3A2RU48 EXOC3-AS1-202ENST00000623673 1663 ntBASIC16.27■□□□□ 0.19
SMCO3A2RU48 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC16.27■□□□□ 0.19
SMCO3A2RU48 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SMCO3A2RU48 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SMCO3A2RU48 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
SMCO3A2RU48 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
SMCO3A2RU48 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SMCO3A2RU48 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SMCO3A2RU48 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms