RNA–Protein interactions for RNA: ENST00000309602.4

LRFN4-201, Transcript of leucine rich repeat and fibronectin type III domain containing 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRFN4, Length 2,431 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN4-201ENST00000309602 NISCHQ9Y2I1 1504 aa42.05■■■■■ 4.32
LRFN4-201ENST00000309602 CCDC180Q9P1Z9 1646 aa35.97■■■■□ 3.35
LRFN4-201ENST00000309602 ZCCHC6Q5VYS8 1495 aaKnown RBP35.54■■■■□ 3.28
LRFN4-201ENST00000309602 SHROOM4Q9ULL8 1493 aa35.45■■■■□ 3.27
LRFN4-201ENST00000309602 DCAF8L2P0C7V8 631 aa34.73■■■■□ 3.15
LRFN4-201ENST00000309602 SUPT5HO00267 1087 aaKnown RBP34.61■■■■□ 3.13
LRFN4-201ENST00000309602 DCAF1Q9Y4B6 1507 aa34.59■■■■□ 3.13
LRFN4-201ENST00000309602 ABCC9O60706 1549 aa33.73■■■□□ 2.99
LRFN4-201ENST00000309602 MYO15BQ96JP2 1530 aa33.72■■■□□ 2.99
LRFN4-201ENST00000309602 CHIC1Q5VXU3 224 aa33.59■■■□□ 2.97
LRFN4-201ENST00000309602 SCRIBQ14160 1630 aa33.55■■■□□ 2.96
LRFN4-201ENST00000309602 NACADO15069 1562 aa33.3■■■□□ 2.92
LRFN4-201ENST00000309602 RSF1Q96T23 1441 aaPredicted RBP33.13■■■□□ 2.89
LRFN4-201ENST00000309602 RB1CC1Q8TDY2 1594 aa32.79■■■□□ 2.84
LRFN4-201ENST00000309602 CECR2Q9BXF3 1484 aa32.77■■■□□ 2.84
LRFN4-201ENST00000309602 MROH2BQ7Z745 1585 aa32.65■■■□□ 2.82
LRFN4-201ENST00000309602 LOC105371045A0A1W2PR82 267 aa32.51■■■□□ 2.79
LRFN4-201ENST00000309602 WIZO95785 1651 aa32.45■■■□□ 2.79
LRFN4-201ENST00000309602 BAZ1AQ9NRL2 1556 aaPredicted RBP32.33■■■□□ 2.77
LRFN4-201ENST00000309602 TRIM41Q8WV44 630 aa32.31■■■□□ 2.76
LRFN4-201ENST00000309602 UNC13AQ9UPW8 1703 aa32.3■■■□□ 2.76
LRFN4-201ENST00000309602 PCGF6Q9BYE7 350 aa32.14■■■□□ 2.74
LRFN4-201ENST00000309602 SMARCA4P51532 1647 aa32.1■■■□□ 2.73
LRFN4-201ENST00000309602 HRCP23327 699 aa32■■■□□ 2.71
LRFN4-201ENST00000309602 TOP2AP11388 1531 aaKnown RBP31.99■■■□□ 2.71
LRFN4-201ENST00000309602 FAM9AQ8IZU1 332 aaPredicted RBP31.97■■■□□ 2.71
LRFN4-201ENST00000309602 EIF4G1Q04637 1599 aaKnown RBP31.96■■■□□ 2.71
LRFN4-201ENST00000309602 BICRAQ9NZM4 1560 aa31.93■■■□□ 2.7
LRFN4-201ENST00000309602 PABPN1Q86U42 306 aaKnown RBP eCLIP31.89■■■□□ 2.7
LRFN4-201ENST00000309602 CCDC88BA6NC98 1476 aa31.8■■■□□ 2.68
LRFN4-201ENST00000309602 SMARCA2P51531 1590 aa31.79■■■□□ 2.68
LRFN4-201ENST00000309602 TRIM26Q12899 539 aaPredicted RBP31.68■■■□□ 2.66
LRFN4-201ENST00000309602 EHMT2Q96KQ7 1210 aa31.63■■■□□ 2.65
LRFN4-201ENST00000309602 ABCC8Q09428 1581 aa31.59■■■□□ 2.65
LRFN4-201ENST00000309602 PEG3Q9GZU2 1588 aa31.55■■■□□ 2.64
LRFN4-201ENST00000309602 ATAD2BQ9ULI0 1458 aa31.34■■■□□ 2.61
LRFN4-201ENST00000309602 PPARGC1BQ86YN6 1023 aaKnown RBP31.32■■■□□ 2.6
LRFN4-201ENST00000309602 SOGA1O94964 1423 aa31.23■■■□□ 2.59
LRFN4-201ENST00000309602 BAZ1BQ9UIG0 1483 aaKnown RBP31.22■■■□□ 2.59
LRFN4-201ENST00000309602 WRNQ14191 1432 aaPredicted RBP eCLIP31.12■■■□□ 2.57
LRFN4-201ENST00000309602 EEA1Q15075 1411 aa31.1■■■□□ 2.57
LRFN4-201ENST00000309602 RUSC2Q8N2Y8 1516 aa31.09■■■□□ 2.57
LRFN4-201ENST00000309602 CSRNP3Q8WYN3 585 aa31.02■■■□□ 2.56
LRFN4-201ENST00000309602 SYNJ1O43426 1573 aa31■■■□□ 2.55
LRFN4-201ENST00000309602 TNIKQ9UKE5 1360 aa30.96■■■□□ 2.55
LRFN4-201ENST00000309602 CEP162Q5TB80 1403 aa30.95■■■□□ 2.55
LRFN4-201ENST00000309602 ZEB1P37275 1124 aaPredicted RBP30.86■■■□□ 2.53
LRFN4-201ENST00000309602 GOLGA3Q08378 1498 aa30.84■■■□□ 2.53
LRFN4-201ENST00000309602 UBTFP17480 764 aaKnown RBP30.81■■■□□ 2.52
LRFN4-201ENST00000309602 NCAPD3P42695 1498 aa30.8■■■□□ 2.52
LRFN4-201ENST00000309602 HMGXB3Q12766 1538 aa30.8■■■□□ 2.52
LRFN4-201ENST00000309602 CEP164Q9UPV0 1460 aa30.7■■■□□ 2.51
LRFN4-201ENST00000309602 KIF21BO75037 1637 aa30.69■■■□□ 2.5
LRFN4-201ENST00000309602 TOP2BQ02880 1626 aa30.68■■■□□ 2.5
LRFN4-201ENST00000309602 BIVM-ERCC5R4GMW8 1640 aa30.59■■■□□ 2.49
LRFN4-201ENST00000309602 TTBK1Q5TCY1 1321 aaPredicted RBP30.55■■■□□ 2.48
LRFN4-201ENST00000309602 RAPGEF2Q9Y4G8 1499 aa30.5■■■□□ 2.47
LRFN4-201ENST00000309602 CFTRP13569 1480 aa30.46■■■□□ 2.47
LRFN4-201ENST00000309602 CLIP1P30622 1438 aa30.45■■■□□ 2.46
LRFN4-201ENST00000309602 CUX1P39880 1505 aa30.43■■■□□ 2.46
LRFN4-201ENST00000309602 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.43■■■□□ 2.46
LRFN4-201ENST00000309602 CC2D2AQ9P2K1 1620 aa30.42■■■□□ 2.46
LRFN4-201ENST00000309602 CCER1Q8TC90 406 aaPredicted RBP30.33■■■□□ 2.45
LRFN4-201ENST00000309602 VPS8Q8N3P4 1428 aa30.3■■■□□ 2.44
LRFN4-201ENST00000309602 PRXQ9BXM0 1461 aa30.28■■■□□ 2.44
LRFN4-201ENST00000309602 ERICH3Q5RHP9 1530 aa30.26■■■□□ 2.43
LRFN4-201ENST00000309602 PRDM2Q13029 1718 aa30.24■■■□□ 2.43
LRFN4-201ENST00000309602 KIF27Q86VH2 1401 aa30.2■■■□□ 2.42
LRFN4-201ENST00000309602 RANGAP1P46060 587 aaPredicted RBP30.2■■■□□ 2.42
LRFN4-201ENST00000309602 CADPSQ9ULU8 1353 aa30.16■■■□□ 2.42
LRFN4-201ENST00000309602 APLP2Q06481 763 aa30.05■■■□□ 2.4
LRFN4-201ENST00000309602 ARAP1Q96P48 1450 aa30.03■■■□□ 2.4
LRFN4-201ENST00000309602 DNAJC5BQ9UF47 199 aa29.98■■■□□ 2.39
LRFN4-201ENST00000309602 CUX2O14529 1486 aa29.96■■■□□ 2.39
LRFN4-201ENST00000309602 FGD5Q6ZNL6 1462 aa29.92■■■□□ 2.38
LRFN4-201ENST00000309602 HNRNPUL2Q1KMD3 747 aaKnown RBP29.92■■■□□ 2.38
LRFN4-201ENST00000309602 IGF1RP08069 1367 aa29.89■■■□□ 2.38
LRFN4-201ENST00000309602 FANCD2Q9BXW9 1451 aa29.86■■■□□ 2.37
LRFN4-201ENST00000309602 ARHGAP35Q9NRY4 1499 aa29.81■■■□□ 2.36
LRFN4-201ENST00000309602 KANK4Q5T7N3 995 aaPredicted RBP29.75■■■□□ 2.35
LRFN4-201ENST00000309602 CARMIL1Q5VZK9 1371 aa29.75■■■□□ 2.35
LRFN4-201ENST00000309602 NESP48681 1621 aa29.72■■■□□ 2.35
LRFN4-201ENST00000309602 DNMBPQ6XZF7 1577 aa29.71■■■□□ 2.35
LRFN4-201ENST00000309602 TOPBP1Q92547 1522 aa29.65■■■□□ 2.34
LRFN4-201ENST00000309602 RAD54L2Q9Y4B4 1467 aa29.63■■■□□ 2.33
LRFN4-201ENST00000309602 POLA1P09884 1462 aaPredicted RBP29.61■■■□□ 2.33
LRFN4-201ENST00000309602 ABCA10Q8WWZ4 1543 aa29.6■■■□□ 2.33
LRFN4-201ENST00000309602 DIEXFQ68CQ4 756 aaKnown RBP29.56■■■□□ 2.32
LRFN4-201ENST00000309602 RRBP1Q9P2E9 1410 aaKnown RBP29.56■■■□□ 2.32
LRFN4-201ENST00000309602 LAMC3Q9Y6N6 1575 aa29.53■■■□□ 2.32
LRFN4-201ENST00000309602 ZNF316A6NFI3 1004 aaPredicted RBP29.46■■■□□ 2.31
LRFN4-201ENST00000309602 URB2Q14146 1524 aaKnown RBP29.46■■■□□ 2.31
LRFN4-201ENST00000309602 TIAM1Q13009 1591 aa29.44■■■□□ 2.3
LRFN4-201ENST00000309602 MAP3K1Q13233 1512 aa29.43■■■□□ 2.3
LRFN4-201ENST00000309602 CCNB3Q8WWL7 1395 aa29.42■■■□□ 2.3
LRFN4-201ENST00000309602 CUL7Q14999 1698 aa29.4■■■□□ 2.3
LRFN4-201ENST00000309602 DHX57Q6P158 1386 aaKnown RBP29.38■■■□□ 2.29
LRFN4-201ENST00000309602 WDR97A6NE52 1622 aa29.38■■■□□ 2.29
LRFN4-201ENST00000309602 FHAD1B1AJZ9 1412 aa29.36■■■□□ 2.29
LRFN4-201ENST00000309602 P3H3Q8IVL6 736 aa29.34■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms