RNA–Protein interactions for RNA: ENST00000297689.3

NFIL3-201, Transcript of nuclear factor, interleukin 3 regulated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NFIL3, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFIL3-201ENST00000297689 NISCHQ9Y2I1 1504 aa42.39■■■■■ 4.38
NFIL3-201ENST00000297689 CCDC180Q9P1Z9 1646 aa36.6■■■■□ 3.45
NFIL3-201ENST00000297689 ZCCHC6Q5VYS8 1495 aaKnown RBP35.73■■■■□ 3.31
NFIL3-201ENST00000297689 SHROOM4Q9ULL8 1493 aa35.18■■■■□ 3.22
NFIL3-201ENST00000297689 DCAF1Q9Y4B6 1507 aa34.95■■■■□ 3.19
NFIL3-201ENST00000297689 DCAF8L2P0C7V8 631 aa34.92■■■■□ 3.18
NFIL3-201ENST00000297689 ABCC9O60706 1549 aa34.68■■■■□ 3.14
NFIL3-201ENST00000297689 SUPT5HO00267 1087 aaKnown RBP34.4■■■■□ 3.1
NFIL3-201ENST00000297689 MYO15BQ96JP2 1530 aa34.27■■■■□ 3.08
NFIL3-201ENST00000297689 NACADO15069 1562 aa34.04■■■■□ 3.04
NFIL3-201ENST00000297689 SCRIBQ14160 1630 aa33.9■■■■□ 3.02
NFIL3-201ENST00000297689 RB1CC1Q8TDY2 1594 aa33.76■■■■□ 3
NFIL3-201ENST00000297689 CHIC1Q5VXU3 224 aa33.6■■■□□ 2.97
NFIL3-201ENST00000297689 RSF1Q96T23 1441 aaPredicted RBP33.16■■■□□ 2.9
NFIL3-201ENST00000297689 UNC13AQ9UPW8 1703 aa33.14■■■□□ 2.9
NFIL3-201ENST00000297689 CECR2Q9BXF3 1484 aa33.02■■■□□ 2.88
NFIL3-201ENST00000297689 MROH2BQ7Z745 1585 aa32.86■■■□□ 2.85
NFIL3-201ENST00000297689 BICRAQ9NZM4 1560 aa32.84■■■□□ 2.85
NFIL3-201ENST00000297689 PABPN1Q86U42 306 aaKnown RBP eCLIP32.7■■■□□ 2.83
NFIL3-201ENST00000297689 WIZO95785 1651 aa32.64■■■□□ 2.82
NFIL3-201ENST00000297689 BAZ1AQ9NRL2 1556 aaPredicted RBP32.63■■■□□ 2.81
NFIL3-201ENST00000297689 SMARCA4P51532 1647 aa32.48■■■□□ 2.79
NFIL3-201ENST00000297689 LOC105371045A0A1W2PR82 267 aa32.42■■■□□ 2.78
NFIL3-201ENST00000297689 TOP2AP11388 1531 aaKnown RBP32.2■■■□□ 2.75
NFIL3-201ENST00000297689 TRIM41Q8WV44 630 aa32.19■■■□□ 2.74
NFIL3-201ENST00000297689 HRCP23327 699 aa32.14■■■□□ 2.74
NFIL3-201ENST00000297689 PCGF6Q9BYE7 350 aa32.11■■■□□ 2.73
NFIL3-201ENST00000297689 EIF4G1Q04637 1599 aaKnown RBP31.99■■■□□ 2.71
NFIL3-201ENST00000297689 PEG3Q9GZU2 1588 aa31.99■■■□□ 2.71
NFIL3-201ENST00000297689 SMARCA2P51531 1590 aa31.98■■■□□ 2.71
NFIL3-201ENST00000297689 CCDC88BA6NC98 1476 aa31.96■■■□□ 2.71
NFIL3-201ENST00000297689 ATAD2BQ9ULI0 1458 aa31.8■■■□□ 2.68
NFIL3-201ENST00000297689 TRIM26Q12899 539 aaPredicted RBP31.74■■■□□ 2.67
NFIL3-201ENST00000297689 FAM9AQ8IZU1 332 aaPredicted RBP31.71■■■□□ 2.67
NFIL3-201ENST00000297689 BAZ1BQ9UIG0 1483 aaKnown RBP31.62■■■□□ 2.65
NFIL3-201ENST00000297689 ABCC8Q09428 1581 aa31.54■■■□□ 2.64
NFIL3-201ENST00000297689 NCAPD3P42695 1498 aa31.46■■■□□ 2.63
NFIL3-201ENST00000297689 CC2D2AQ9P2K1 1620 aa31.39■■■□□ 2.61
NFIL3-201ENST00000297689 HMGXB3Q12766 1538 aa31.36■■■□□ 2.61
NFIL3-201ENST00000297689 PPARGC1BQ86YN6 1023 aaKnown RBP31.29■■■□□ 2.6
NFIL3-201ENST00000297689 EHMT2Q96KQ7 1210 aa31.26■■■□□ 2.59
NFIL3-201ENST00000297689 SOGA1O94964 1423 aa31.14■■■□□ 2.58
NFIL3-201ENST00000297689 WRNQ14191 1432 aaPredicted RBP eCLIP31.14■■■□□ 2.58
NFIL3-201ENST00000297689 EEA1Q15075 1411 aa31.13■■■□□ 2.57
NFIL3-201ENST00000297689 SYNJ1O43426 1573 aa31.08■■■□□ 2.57
NFIL3-201ENST00000297689 RUSC2Q8N2Y8 1516 aa30.99■■■□□ 2.55
NFIL3-201ENST00000297689 TNIKQ9UKE5 1360 aa30.98■■■□□ 2.55
NFIL3-201ENST00000297689 ZEB1P37275 1124 aaPredicted RBP30.98■■■□□ 2.55
NFIL3-201ENST00000297689 CSRNP3Q8WYN3 585 aa30.96■■■□□ 2.55
NFIL3-201ENST00000297689 CEP162Q5TB80 1403 aa30.91■■■□□ 2.54
NFIL3-201ENST00000297689 CFTRP13569 1480 aa30.86■■■□□ 2.53
NFIL3-201ENST00000297689 DNAJC5BQ9UF47 199 aa30.84■■■□□ 2.53
NFIL3-201ENST00000297689 TOP2BQ02880 1626 aa30.83■■■□□ 2.53
NFIL3-201ENST00000297689 GOLGA3Q08378 1498 aa30.79■■■□□ 2.52
NFIL3-201ENST00000297689 BIVM-ERCC5R4GMW8 1640 aa30.79■■■□□ 2.52
NFIL3-201ENST00000297689 PRDM2Q13029 1718 aa30.72■■■□□ 2.51
NFIL3-201ENST00000297689 KIF21BO75037 1637 aa30.71■■■□□ 2.51
NFIL3-201ENST00000297689 CUX1P39880 1505 aa30.67■■■□□ 2.5
NFIL3-201ENST00000297689 CEP164Q9UPV0 1460 aa30.67■■■□□ 2.5
NFIL3-201ENST00000297689 CADPSQ9ULU8 1353 aa30.63■■■□□ 2.49
NFIL3-201ENST00000297689 UBTFP17480 764 aaKnown RBP30.62■■■□□ 2.49
NFIL3-201ENST00000297689 NESP48681 1621 aa30.43■■■□□ 2.46
NFIL3-201ENST00000297689 RAPGEF2Q9Y4G8 1499 aa30.41■■■□□ 2.46
NFIL3-201ENST00000297689 CLIP1P30622 1438 aa30.38■■■□□ 2.45
NFIL3-201ENST00000297689 LAMC3Q9Y6N6 1575 aa30.37■■■□□ 2.45
NFIL3-201ENST00000297689 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.35■■■□□ 2.45
NFIL3-201ENST00000297689 FANCD2Q9BXW9 1451 aa30.32■■■□□ 2.44
NFIL3-201ENST00000297689 PRXQ9BXM0 1461 aa30.29■■■□□ 2.44
NFIL3-201ENST00000297689 VPS8Q8N3P4 1428 aa30.29■■■□□ 2.44
NFIL3-201ENST00000297689 ERICH3Q5RHP9 1530 aa30.27■■■□□ 2.44
NFIL3-201ENST00000297689 KIF27Q86VH2 1401 aa30.26■■■□□ 2.43
NFIL3-201ENST00000297689 CCER1Q8TC90 406 aaPredicted RBP30.25■■■□□ 2.43
NFIL3-201ENST00000297689 TTBK1Q5TCY1 1321 aaPredicted RBP30.23■■■□□ 2.43
NFIL3-201ENST00000297689 FGD5Q6ZNL6 1462 aa30.21■■■□□ 2.43
NFIL3-201ENST00000297689 PDS5BQ9NTI5 1447 aa30.13■■■□□ 2.41
NFIL3-201ENST00000297689 DNMBPQ6XZF7 1577 aa30.12■■■□□ 2.41
NFIL3-201ENST00000297689 CUX2O14529 1486 aa30.12■■■□□ 2.41
NFIL3-201ENST00000297689 TOPBP1Q92547 1522 aa30.07■■■□□ 2.4
NFIL3-201ENST00000297689 KIF21AQ7Z4S6 1674 aa30.03■■■□□ 2.4
NFIL3-201ENST00000297689 IGF1RP08069 1367 aa30.02■■■□□ 2.4
NFIL3-201ENST00000297689 ARAP1Q96P48 1450 aa29.99■■■□□ 2.39
NFIL3-201ENST00000297689 POLA1P09884 1462 aaPredicted RBP29.97■■■□□ 2.39
NFIL3-201ENST00000297689 URB2Q14146 1524 aaKnown RBP29.97■■■□□ 2.39
NFIL3-201ENST00000297689 RAD54L2Q9Y4B4 1467 aa29.96■■■□□ 2.39
NFIL3-201ENST00000297689 RANGAP1P46060 587 aaPredicted RBP29.92■■■□□ 2.38
NFIL3-201ENST00000297689 ABCA10Q8WWZ4 1543 aa29.91■■■□□ 2.38
NFIL3-201ENST00000297689 APLP2Q06481 763 aa29.89■■■□□ 2.38
NFIL3-201ENST00000297689 CARMIL1Q5VZK9 1371 aa29.84■■■□□ 2.37
NFIL3-201ENST00000297689 WDR97A6NE52 1622 aa29.8■■■□□ 2.36
NFIL3-201ENST00000297689 ARHGAP35Q9NRY4 1499 aa29.77■■■□□ 2.36
NFIL3-201ENST00000297689 HNRNPUL2Q1KMD3 747 aaKnown RBP29.76■■■□□ 2.36
NFIL3-201ENST00000297689 MRC2Q9UBG0 1479 aa29.76■■■□□ 2.35
NFIL3-201ENST00000297689 ERCC6Q03468 1493 aa29.7■■■□□ 2.34
NFIL3-201ENST00000297689 KANK4Q5T7N3 995 aaPredicted RBP29.67■■■□□ 2.34
NFIL3-201ENST00000297689 ABCA5Q8WWZ7 1642 aa29.65■■■□□ 2.34
NFIL3-201ENST00000297689 CUL7Q14999 1698 aa29.64■■■□□ 2.34
NFIL3-201ENST00000297689 WDR62O43379 1518 aa29.63■■■□□ 2.33
NFIL3-201ENST00000297689 RRBP1Q9P2E9 1410 aaKnown RBP29.61■■■□□ 2.33
NFIL3-201ENST00000297689 TARBP1Q13395 1621 aaKnown RBP29.59■■■□□ 2.33
NFIL3-201ENST00000297689 DIEXFQ68CQ4 756 aaKnown RBP29.59■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms