Protein–RNA interactions for Protein: Q9Y6V7

DDX49, Probable ATP-dependent RNA helicase DDX49, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX49Q9Y6V7 MIR3665-201ENST00000578708 105 ntBASIC31.19■■■□□ 2.58
DDX49Q9Y6V7 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC31.19■■■□□ 2.58
DDX49Q9Y6V7 CHML-205ENST00000638160 705 ntTSL 3 BASIC31.19■■■□□ 2.58
DDX49Q9Y6V7 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC31.19■■■□□ 2.58
DDX49Q9Y6V7 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC31.19■■■□□ 2.58
DDX49Q9Y6V7 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
DDX49Q9Y6V7 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
DDX49Q9Y6V7 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
DDX49Q9Y6V7 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
DDX49Q9Y6V7 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
DDX49Q9Y6V7 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC31.16■■■□□ 2.58
DDX49Q9Y6V7 WASH5P-204ENST00000632292 975 ntBASIC31.16■■■□□ 2.58
DDX49Q9Y6V7 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC31.15■■■□□ 2.58
DDX49Q9Y6V7 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
DDX49Q9Y6V7 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC31.14■■■□□ 2.58
DDX49Q9Y6V7 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
DDX49Q9Y6V7 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
DDX49Q9Y6V7 AC005559.1-201ENST00000589661 871 ntBASIC31.12■■■□□ 2.57
DDX49Q9Y6V7 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
DDX49Q9Y6V7 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
DDX49Q9Y6V7 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC31.11■■■□□ 2.57
DDX49Q9Y6V7 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC31.1■■■□□ 2.57
DDX49Q9Y6V7 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC31.09■■■□□ 2.57
DDX49Q9Y6V7 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC31.08■■■□□ 2.57
DDX49Q9Y6V7 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC31.08■■■□□ 2.57
DDX49Q9Y6V7 DENR-202ENST00000455982 1052 ntTSL 5 BASIC31.08■■■□□ 2.57
DDX49Q9Y6V7 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC31.08■■■□□ 2.57
DDX49Q9Y6V7 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
DDX49Q9Y6V7 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC31.07■■■□□ 2.56
DDX49Q9Y6V7 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
DDX49Q9Y6V7 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
DDX49Q9Y6V7 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC31.06■■■□□ 2.56
DDX49Q9Y6V7 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC31.06■■■□□ 2.56
DDX49Q9Y6V7 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC31.06■■■□□ 2.56
DDX49Q9Y6V7 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
DDX49Q9Y6V7 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
DDX49Q9Y6V7 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC31.04■■■□□ 2.56
DDX49Q9Y6V7 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC31.04■■■□□ 2.56
DDX49Q9Y6V7 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
DDX49Q9Y6V7 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC31.02■■■□□ 2.56
DDX49Q9Y6V7 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC31.02■■■□□ 2.56
DDX49Q9Y6V7 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC31.02■■■□□ 2.56
DDX49Q9Y6V7 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC31.01■■■□□ 2.55
DDX49Q9Y6V7 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
DDX49Q9Y6V7 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
DDX49Q9Y6V7 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
DDX49Q9Y6V7 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
DDX49Q9Y6V7 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
DDX49Q9Y6V7 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC30.99■■■□□ 2.55
DDX49Q9Y6V7 ABHD17AP4-201ENST00000411545 909 ntBASIC30.99■■■□□ 2.55
DDX49Q9Y6V7 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
DDX49Q9Y6V7 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
DDX49Q9Y6V7 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
DDX49Q9Y6V7 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
DDX49Q9Y6V7 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
DDX49Q9Y6V7 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC30.96■■■□□ 2.55
DDX49Q9Y6V7 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC30.95■■■□□ 2.55
DDX49Q9Y6V7 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.55
DDX49Q9Y6V7 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC30.94■■■□□ 2.54
DDX49Q9Y6V7 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
DDX49Q9Y6V7 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC30.94■■■□□ 2.54
DDX49Q9Y6V7 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
DDX49Q9Y6V7 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
DDX49Q9Y6V7 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
DDX49Q9Y6V7 AC044849.2-201ENST00000606596 710 ntBASIC30.92■■■□□ 2.54
DDX49Q9Y6V7 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
DDX49Q9Y6V7 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
DDX49Q9Y6V7 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC30.91■■■□□ 2.54
DDX49Q9Y6V7 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
DDX49Q9Y6V7 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC30.91■■■□□ 2.54
DDX49Q9Y6V7 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
DDX49Q9Y6V7 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
DDX49Q9Y6V7 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
DDX49Q9Y6V7 MIR7108-201ENST00000614319 87 ntBASIC30.9■■■□□ 2.54
DDX49Q9Y6V7 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
DDX49Q9Y6V7 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
DDX49Q9Y6V7 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
DDX49Q9Y6V7 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
DDX49Q9Y6V7 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
DDX49Q9Y6V7 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC30.88■■■□□ 2.53
DDX49Q9Y6V7 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
DDX49Q9Y6V7 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC30.87■■■□□ 2.53
DDX49Q9Y6V7 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
DDX49Q9Y6V7 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
DDX49Q9Y6V7 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
DDX49Q9Y6V7 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC30.86■■■□□ 2.53
DDX49Q9Y6V7 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC30.86■■■□□ 2.53
DDX49Q9Y6V7 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC30.86■■■□□ 2.53
DDX49Q9Y6V7 PVT1-219ENST00000523427 938 ntTSL 3 BASIC30.86■■■□□ 2.53
DDX49Q9Y6V7 AC142086.6-201ENST00000621154 1765 ntBASIC30.86■■■□□ 2.53
DDX49Q9Y6V7 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
DDX49Q9Y6V7 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
DDX49Q9Y6V7 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC30.85■■■□□ 2.53
DDX49Q9Y6V7 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
DDX49Q9Y6V7 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
DDX49Q9Y6V7 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
DDX49Q9Y6V7 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC30.83■■■□□ 2.53
DDX49Q9Y6V7 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
DDX49Q9Y6V7 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
DDX49Q9Y6V7 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC30.81■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms