Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
PCDHGA1Q9Y5H4 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
PCDHGA1Q9Y5H4 HES6-205ENST00000409356 528 ntTSL 2 BASIC25.65■■□□□ 1.7
PCDHGA1Q9Y5H4 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC25.65■■□□□ 1.7
PCDHGA1Q9Y5H4 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC25.65■■□□□ 1.7
PCDHGA1Q9Y5H4 EI24-212ENST00000615917 1407 ntTSL 2 BASIC25.64■■□□□ 1.7
PCDHGA1Q9Y5H4 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC25.64■■□□□ 1.7
PCDHGA1Q9Y5H4 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC25.64■■□□□ 1.7
PCDHGA1Q9Y5H4 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC25.64■■□□□ 1.69
PCDHGA1Q9Y5H4 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
PCDHGA1Q9Y5H4 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC25.61■■□□□ 1.69
PCDHGA1Q9Y5H4 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
PCDHGA1Q9Y5H4 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
PCDHGA1Q9Y5H4 CHML-204ENST00000638121 920 ntTSL 2 BASIC25.59■■□□□ 1.69
PCDHGA1Q9Y5H4 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC25.59■■□□□ 1.69
PCDHGA1Q9Y5H4 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC25.58■■□□□ 1.69
PCDHGA1Q9Y5H4 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC25.57■■□□□ 1.68
PCDHGA1Q9Y5H4 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
PCDHGA1Q9Y5H4 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC25.56■■□□□ 1.68
PCDHGA1Q9Y5H4 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
PCDHGA1Q9Y5H4 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
PCDHGA1Q9Y5H4 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
PCDHGA1Q9Y5H4 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC25.54■■□□□ 1.68
PCDHGA1Q9Y5H4 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
PCDHGA1Q9Y5H4 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
PCDHGA1Q9Y5H4 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
PCDHGA1Q9Y5H4 SRP68-213ENST00000629930 165 ntTSL 5 BASIC25.54■■□□□ 1.68
PCDHGA1Q9Y5H4 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
PCDHGA1Q9Y5H4 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
PCDHGA1Q9Y5H4 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC25.53■■□□□ 1.68
PCDHGA1Q9Y5H4 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
PCDHGA1Q9Y5H4 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC25.52■■□□□ 1.68
PCDHGA1Q9Y5H4 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
PCDHGA1Q9Y5H4 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
PCDHGA1Q9Y5H4 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC25.51■■□□□ 1.67
PCDHGA1Q9Y5H4 RARRES2P2-201ENST00000394842 485 ntBASIC25.5■■□□□ 1.67
PCDHGA1Q9Y5H4 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
PCDHGA1Q9Y5H4 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
PCDHGA1Q9Y5H4 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC25.49■■□□□ 1.67
PCDHGA1Q9Y5H4 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
PCDHGA1Q9Y5H4 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
PCDHGA1Q9Y5H4 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC25.47■■□□□ 1.67
PCDHGA1Q9Y5H4 ABHD17AP5-201ENST00000580133 923 ntBASIC25.46■■□□□ 1.67
PCDHGA1Q9Y5H4 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
PCDHGA1Q9Y5H4 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
PCDHGA1Q9Y5H4 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
PCDHGA1Q9Y5H4 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC25.45■■□□□ 1.66
PCDHGA1Q9Y5H4 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC25.44■■□□□ 1.66
PCDHGA1Q9Y5H4 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
PCDHGA1Q9Y5H4 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
PCDHGA1Q9Y5H4 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
PCDHGA1Q9Y5H4 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
PCDHGA1Q9Y5H4 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.41■■□□□ 1.66
PCDHGA1Q9Y5H4 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
PCDHGA1Q9Y5H4 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC25.41■■□□□ 1.66
PCDHGA1Q9Y5H4 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
PCDHGA1Q9Y5H4 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
PCDHGA1Q9Y5H4 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
PCDHGA1Q9Y5H4 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC25.4■■□□□ 1.66
PCDHGA1Q9Y5H4 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC25.4■■□□□ 1.66
PCDHGA1Q9Y5H4 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
PCDHGA1Q9Y5H4 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC25.4■■□□□ 1.66
PCDHGA1Q9Y5H4 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC25.4■■□□□ 1.66
PCDHGA1Q9Y5H4 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC25.4■■□□□ 1.66
PCDHGA1Q9Y5H4 GPX1-201ENST00000419349 1106 ntBASIC25.39■■□□□ 1.66
PCDHGA1Q9Y5H4 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PCDHGA1Q9Y5H4 RNF126P1-201ENST00000567452 1320 ntBASIC25.38■■□□□ 1.65
PCDHGA1Q9Y5H4 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
PCDHGA1Q9Y5H4 CHST11-202ENST00000546689 756 ntTSL 2 BASIC25.38■■□□□ 1.65
PCDHGA1Q9Y5H4 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
PCDHGA1Q9Y5H4 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC25.37■■□□□ 1.65
PCDHGA1Q9Y5H4 TPT1-202ENST00000379055 948 ntTSL 2 BASIC25.37■■□□□ 1.65
PCDHGA1Q9Y5H4 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHGA1Q9Y5H4 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
PCDHGA1Q9Y5H4 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC25.36■■□□□ 1.65
PCDHGA1Q9Y5H4 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
PCDHGA1Q9Y5H4 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
PCDHGA1Q9Y5H4 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
PCDHGA1Q9Y5H4 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
PCDHGA1Q9Y5H4 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC25.35■■□□□ 1.65
PCDHGA1Q9Y5H4 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
PCDHGA1Q9Y5H4 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
PCDHGA1Q9Y5H4 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
PCDHGA1Q9Y5H4 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC25.34■■□□□ 1.65
PCDHGA1Q9Y5H4 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC25.33■■□□□ 1.65
PCDHGA1Q9Y5H4 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHGA1Q9Y5H4 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
PCDHGA1Q9Y5H4 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC25.32■■□□□ 1.64
PCDHGA1Q9Y5H4 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHGA1Q9Y5H4 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC25.32■■□□□ 1.64
PCDHGA1Q9Y5H4 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC25.32■■□□□ 1.64
PCDHGA1Q9Y5H4 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
PCDHGA1Q9Y5H4 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC25.31■■□□□ 1.64
PCDHGA1Q9Y5H4 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHGA1Q9Y5H4 AC120057.4-201ENST00000624722 1615 ntBASIC25.31■■□□□ 1.64
PCDHGA1Q9Y5H4 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC25.31■■□□□ 1.64
PCDHGA1Q9Y5H4 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
PCDHGA1Q9Y5H4 LINC00273-201ENST00000539813 1452 ntBASIC25.31■■□□□ 1.64
PCDHGA1Q9Y5H4 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
PCDHGA1Q9Y5H4 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms